Wall clock time and date at job start Tue Mar 31 2020 22:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 116.99988 * 2 1 4 4 C 1.38658 * 120.06141 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96748 * 179.70180 * 4 3 2 6 6 C 1.38259 * 120.09252 * 0.54916 * 5 4 3 7 7 C 1.50705 * 119.93581 * 179.72595 * 6 5 4 8 8 C 1.50702 * 109.47082 * 269.72450 * 7 6 5 9 9 O 1.21283 * 119.99575 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00335 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99594 * 0.02562 * 10 8 7 12 12 C 1.46501 * 120.00308 * 180.02562 * 10 8 7 13 13 C 1.52995 * 109.46937 * 269.99876 * 12 10 8 14 14 H 1.08998 * 109.47344 * 305.00072 * 13 12 10 15 15 O 1.42909 * 109.47082 * 64.99870 * 13 12 10 16 16 C 1.53001 * 109.47095 * 184.99556 * 13 12 10 17 17 N 1.46499 * 109.47042 * 179.97438 * 16 13 12 18 18 C 1.36942 * 119.99863 * 180.02562 * 17 16 13 19 19 H 1.07998 * 119.99646 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99800 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00118 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47210 * 119.99522 * 22 20 18 25 25 H 1.48497 * 109.47276 * 239.99769 * 22 20 18 26 26 C 1.38255 * 120.12684 * 359.44934 * 6 5 4 27 27 C 1.38329 * 120.03153 * 0.27368 * 26 6 5 28 28 F 1.35099 * 120.04964 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47179 * 59.99794 * 1 2 3 30 30 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47077 * 299.99739 * 1 2 3 32 32 H 1.08002 * 120.01666 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.95626 * 180.29466 * 5 4 3 34 34 H 1.09000 * 109.47071 * 149.72425 * 7 6 5 35 35 H 1.08996 * 109.47036 * 29.72276 * 7 6 5 36 36 H 1.09001 * 109.47060 * 90.00388 * 11 10 8 37 37 H 1.09004 * 109.47073 * 209.99877 * 11 10 8 38 38 H 1.09000 * 109.47212 * 329.99960 * 11 10 8 39 39 H 1.09000 * 109.46877 * 29.99967 * 12 10 8 40 40 H 1.09000 * 109.47251 * 150.00072 * 12 10 8 41 41 H 0.96701 * 113.99408 * 59.99630 * 15 13 12 42 42 H 1.08998 * 109.47446 * 300.00454 * 16 13 12 43 43 H 1.08999 * 109.46643 * 60.00807 * 16 13 12 44 44 H 0.97000 * 120.00597 * 0.02562 * 17 16 13 45 45 H 0.97000 * 119.99619 * 180.02562 * 21 20 18 46 46 H 1.08008 * 119.98270 * 180.25132 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0068 6 6 3.3023 3.6777 0.0010 7 6 3.9850 5.0212 0.0016 8 6 4.2125 5.4697 -1.4191 9 8 3.8550 4.7676 -2.3412 10 7 4.8122 6.6513 -1.6649 11 6 5.2435 7.4996 -0.5510 12 6 5.0329 7.0875 -3.0460 13 6 6.3959 6.5864 -3.5274 14 1 7.1705 6.9205 -2.8371 15 8 6.3874 5.1583 -3.5787 16 6 6.6809 7.1452 -4.9229 17 7 7.9863 6.6658 -5.3837 18 6 8.4573 7.0388 -6.6143 19 1 7.8662 7.6860 -7.2452 20 6 9.6940 6.5842 -7.0510 21 7 10.4141 5.7950 -6.2822 22 14 10.3362 7.0923 -8.7300 23 1 9.3436 7.9759 -9.3929 24 1 11.6194 7.8220 -8.5690 25 1 10.5557 5.8827 -9.5629 26 6 4.0579 2.5199 0.0005 27 6 3.4333 1.2856 0.0000 28 9 4.1713 0.1540 -0.0010 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2137 2.3200 0.0005 33 1 1.3342 4.5115 0.0120 34 1 4.9430 4.9418 0.5154 35 1 3.3562 5.7480 0.5157 36 1 6.2669 7.2448 -0.2753 37 1 5.1984 8.5461 -0.8526 38 1 4.5863 7.3390 0.3036 39 1 4.2495 6.6803 -3.6851 40 1 5.0094 8.1763 -3.0913 41 1 5.7211 4.7902 -4.1751 42 1 5.9064 6.8111 -5.6133 43 1 6.6875 8.2344 -4.8837 44 1 8.5171 6.0843 -4.8171 45 1 11.2785 5.4777 -6.5874 46 1 5.1364 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332536118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:01 Heat of formation + Delta-G solvation = -150.884035 kcal Electronic energy + Delta-G solvation = -29281.137653 eV Core-core repulsion = 24892.339172 eV Total energy + Delta-G solvation = -4388.798481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.86498 -41.34060 -40.69148 -38.96000 -38.26206 -36.31662 -35.82698 -33.37741 -33.11541 -31.74091 -30.97955 -29.14110 -27.94279 -27.64167 -26.35632 -24.50061 -23.81203 -22.84900 -22.42758 -20.20845 -19.29559 -19.24253 -18.17997 -18.02326 -17.85248 -17.65225 -17.15515 -16.80430 -16.50586 -16.41059 -16.13386 -16.06793 -15.81697 -15.44303 -15.19350 -15.00287 -14.88287 -14.43146 -14.23139 -14.00341 -13.78036 -13.67536 -13.24990 -13.19935 -13.09349 -12.94454 -12.83176 -12.73279 -12.61716 -12.38166 -12.14160 -12.08320 -12.01010 -11.97912 -11.81901 -11.13020 -10.99694 -10.71297 -9.93829 -9.48018 -9.14501 -9.02608 -7.96074 -5.26149 0.12406 0.17769 1.45146 1.47334 1.57215 1.75684 2.08075 2.19956 2.53754 2.59325 3.20578 3.35490 3.49962 3.59790 3.71282 3.78990 3.86359 4.01891 4.12044 4.20841 4.25004 4.35450 4.37354 4.37825 4.45743 4.48793 4.51508 4.57999 4.66248 4.71137 4.75255 4.82367 4.89524 4.91392 5.03730 5.06708 5.13789 5.26347 5.45399 5.45597 5.57721 5.64796 6.24777 6.28148 6.50110 6.80761 7.30944 7.32433 8.07902 8.30315 9.27654 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.002203 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.401918 B =12705.344262 C =13746.913656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.082 3.918 4 C -0.177 4.177 5 C -0.070 4.070 6 C -0.079 4.079 7 C -0.089 4.089 8 C 0.510 3.490 9 O -0.571 6.571 10 N -0.612 5.612 11 C 0.066 3.934 12 C 0.097 3.903 13 C 0.095 3.905 14 H 0.088 0.912 15 O -0.566 6.566 16 C 0.123 3.877 17 N -0.742 5.742 18 C -0.246 4.246 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.291 1.291 25 H -0.295 1.295 26 C -0.111 4.111 27 C 0.032 3.968 28 F -0.152 7.152 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.374 0.626 42 H 0.021 0.979 43 H 0.041 0.959 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.899 0.529 21.699 33.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.036 3.964 4 C -0.195 4.195 5 C -0.088 4.088 6 C -0.080 4.080 7 C -0.128 4.128 8 C 0.299 3.701 9 O -0.450 6.450 10 N -0.344 5.344 11 C -0.075 4.075 12 C -0.027 4.027 13 C 0.034 3.966 14 H 0.106 0.894 15 O -0.372 6.372 16 C -0.005 4.005 17 N -0.385 5.385 18 C -0.378 4.378 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.218 1.218 25 H -0.223 1.223 26 C -0.130 4.130 27 C 0.012 3.988 28 F -0.131 7.131 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.180 0.820 34 H 0.137 0.863 35 H 0.163 0.837 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.222 0.778 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.539 0.118 21.502 32.627 hybrid contribution 0.780 -0.618 -1.426 1.739 sum -23.760 -0.500 20.076 31.110 Atomic orbital electron populations 1.23439 0.75611 1.05871 1.02824 1.86103 1.24260 1.26141 1.88786 1.19200 0.90509 0.86701 1.00013 1.21425 1.01569 0.90530 1.06000 1.21236 0.93428 0.98426 0.95726 1.19282 0.93913 0.93574 1.01250 1.20728 1.04275 0.94506 0.93304 1.21055 0.76641 0.80321 0.92086 1.90692 1.52319 1.54139 1.47842 1.47832 1.59217 1.20189 1.07159 1.22166 1.00926 0.95409 0.89020 1.22023 0.95796 1.01386 0.83505 1.22448 0.97801 0.80960 0.95355 0.89379 1.86521 1.61676 1.20234 1.68755 1.21461 0.87360 0.97432 0.94230 1.42485 1.18517 1.59066 1.18384 1.19721 1.00352 1.23384 0.94331 0.90338 1.25676 0.98088 1.00925 1.02591 1.69868 1.13552 1.39860 1.38897 0.85005 0.77988 0.77137 0.79199 1.18692 1.21782 1.22265 1.21002 1.01217 0.90224 1.00546 1.17337 0.86985 0.82898 1.11564 1.91436 1.77010 1.49980 1.94712 0.91454 0.86426 0.90554 0.81459 0.82007 0.86300 0.83692 0.92703 0.89235 0.87745 0.90615 0.86748 0.77825 0.96131 0.94079 0.79468 0.94055 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.55 10.36 -93.07 -0.96 -8.51 16 3 C 0.08 1.90 6.69 22.53 0.15 2.05 16 4 C -0.18 -2.89 9.04 22.36 0.20 -2.69 16 5 C -0.07 -1.08 9.69 22.26 0.22 -0.87 16 6 C -0.08 -1.50 4.37 -19.85 -0.09 -1.59 16 7 C -0.09 -1.23 4.38 29.10 0.13 -1.10 16 8 C 0.51 11.52 7.29 87.66 0.64 12.16 16 9 O -0.57 -18.29 14.59 4.34 0.06 -18.23 16 10 N -0.61 -11.89 2.86 -846.74 -2.42 -14.30 16 11 C 0.07 0.69 10.29 127.77 1.31 2.00 16 12 C 0.10 2.28 5.16 86.38 0.45 2.72 16 13 C 0.09 3.12 3.30 30.59 0.10 3.22 16 14 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 15 O -0.57 -22.33 11.95 -141.61 -1.69 -24.02 16 16 C 0.12 4.87 5.92 86.38 0.51 5.38 16 17 N -0.74 -39.49 5.49 -343.45 -1.89 -41.37 16 18 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 21 N -0.97 -62.26 13.06 21.65 0.28 -61.98 16 22 Si 0.98 47.42 29.55 68.60 2.03 49.44 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 C -0.11 -2.69 9.67 22.30 0.22 -2.48 16 27 C 0.03 0.87 7.31 22.45 0.16 1.04 16 28 F -0.15 -4.81 17.11 44.97 0.77 -4.04 16 29 H 0.07 0.59 7.66 -2.39 -0.02 0.58 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.51 7.66 -2.39 -0.02 0.49 16 32 H 0.17 1.56 6.30 -2.91 -0.02 1.55 16 33 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.12 1.34 8.05 -2.39 -0.02 1.32 16 35 H 0.15 0.76 7.34 -2.39 -0.02 0.74 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.67 7.89 -2.38 -0.02 0.65 16 38 H 0.10 0.39 6.44 -2.39 -0.02 0.37 16 39 H 0.08 1.98 7.42 -2.39 -0.02 1.96 16 40 H 0.11 1.99 7.89 -2.39 -0.02 1.97 16 41 H 0.37 14.32 8.75 -74.06 -0.65 13.67 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.37 21.88 7.54 -92.71 -0.70 21.18 16 45 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -85.06 390.64 2.27 -82.78 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.33 Total: 36.80 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.42 Total: 3.42 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.02 Total: -117.65 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -2.59 Total: -50.76 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.77 Total: -4.04 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -85.06 2.27 -82.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332536118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.100 kcal (2) G-P(sol) polarization free energy of solvation -85.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds