Wall clock time and date at job start Tue Mar 31 2020 22:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36928 * 120.00094 * 2 1 4 4 H 1.08002 * 119.99730 * 202.93956 * 3 2 1 5 5 C 1.38809 * 120.00264 * 22.92986 * 3 2 1 6 6 N 1.31616 * 120.00121 * 13.11310 * 5 3 2 7 7 Si 1.86806 * 120.00021 * 193.11592 * 5 3 2 8 8 H 1.48498 * 109.47258 * 60.00193 * 7 5 3 9 9 H 1.48499 * 109.46911 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46945 * 299.99724 * 7 5 3 11 11 C 1.46506 * 119.99622 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47168 * 89.99771 * 11 2 1 13 13 H 1.09003 * 109.47161 * 304.99597 * 12 11 2 14 14 O 1.42895 * 109.47470 * 64.99691 * 12 11 2 15 15 C 1.53004 * 109.46795 * 184.99851 * 12 11 2 16 16 N 1.46501 * 109.46862 * 179.97438 * 15 12 11 17 17 C 1.46501 * 120.00424 * 270.00062 * 16 15 12 18 18 C 1.34781 * 119.99693 * 89.99643 * 16 15 12 19 19 O 1.21279 * 120.00025 * 0.02562 * 18 16 15 20 20 C 1.50700 * 119.99647 * 179.97438 * 18 16 15 21 21 O 1.42907 * 109.46774 * 180.02562 * 20 18 16 22 22 C 1.35961 * 116.99794 * 180.02562 * 21 20 18 23 23 C 1.38664 * 120.06038 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.96207 * 180.02562 * 23 22 21 25 25 C 1.38253 * 120.10111 * 0.02562 * 24 23 22 26 26 C 1.38257 * 120.12633 * 359.97438 * 25 24 23 27 27 C 1.38339 * 120.02686 * 0.02562 * 26 25 24 28 28 F 1.35106 * 120.04659 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.46875 * 275.12651 * 1 2 3 30 30 H 1.08994 * 109.47483 * 35.12167 * 1 2 3 31 31 H 1.08997 * 109.47803 * 155.13072 * 1 2 3 32 32 H 0.96993 * 120.00267 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47076 * 329.99333 * 11 2 1 34 34 H 1.09000 * 109.46651 * 209.99975 * 11 2 1 35 35 H 0.96700 * 113.99634 * 59.99496 * 14 12 11 36 36 H 1.09000 * 109.46938 * 60.00351 * 15 12 11 37 37 H 1.08997 * 109.46744 * 299.99550 * 15 12 11 38 38 H 1.08997 * 109.46817 * 270.00476 * 17 16 15 39 39 H 1.09004 * 109.46889 * 29.99865 * 17 16 15 40 40 H 1.08990 * 109.47255 * 149.99752 * 17 16 15 41 41 H 1.08997 * 109.47216 * 60.01008 * 20 18 16 42 42 H 1.09002 * 109.47486 * 300.00579 * 20 18 16 43 43 H 1.07991 * 120.01863 * 0.04871 * 23 22 21 44 44 H 1.08004 * 119.94460 * 180.27512 * 24 23 22 45 45 H 1.08001 * 119.94086 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99049 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1656 1.2227 -0.3646 5 6 1.5380 2.3405 0.4683 6 7 0.4118 2.2606 1.1448 7 14 2.3131 4.0078 0.1384 8 1 2.4151 4.2250 -1.3270 9 1 1.4703 5.0729 0.7387 10 1 3.6697 4.0509 0.7409 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5060 -1.7542 -1.9823 14 8 3.3208 -0.7718 -2.0818 15 6 3.1059 -3.0934 -1.4456 16 7 3.3494 -3.5160 -2.8270 17 6 2.3245 -4.2689 -3.5543 18 6 4.5165 -3.2120 -3.4289 19 8 5.3651 -2.5891 -2.8267 20 6 4.7672 -3.6473 -4.8497 21 8 6.0644 -3.2098 -5.2599 22 6 6.4495 -3.5226 -6.5258 23 6 5.5970 -4.2358 -7.3549 24 6 5.9907 -4.5531 -8.6409 25 6 7.2336 -4.1610 -9.1022 26 6 8.0867 -3.4497 -8.2789 27 6 7.6979 -3.1293 -6.9905 28 9 8.5310 -2.4338 -6.1857 29 1 -0.3633 0.0918 1.0236 30 1 -0.3634 0.8405 -0.5912 31 1 -0.3634 -0.9323 -0.4322 32 1 -0.0155 3.0674 1.4724 33 1 1.6084 -2.0286 0.5130 34 1 3.1499 -1.1387 0.5133 35 1 4.1835 -0.6806 -1.6546 36 1 2.4434 -3.8089 -0.9586 37 1 4.0522 -3.0490 -0.9066 38 1 2.4755 -5.3364 -3.3937 39 1 1.3374 -3.9829 -3.1911 40 1 2.3981 -4.0476 -4.6189 41 1 4.0124 -3.2090 -5.5025 42 1 4.7142 -4.7342 -4.9115 43 1 4.6259 -4.5428 -6.9960 44 1 5.3248 -5.1048 -9.2880 45 1 7.5389 -4.4107 -10.1077 46 1 9.0570 -3.1441 -8.6416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332678900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:39 Heat of formation + Delta-G solvation = -99.920095 kcal Electronic energy + Delta-G solvation = -29609.499512 eV Core-core repulsion = 25222.910994 eV Total energy + Delta-G solvation = -4386.588519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.95453 -40.67633 -39.64916 -37.79849 -37.03737 -35.41661 -34.49239 -31.42522 -31.11438 -30.83939 -29.86570 -28.27237 -27.10117 -25.87667 -25.14768 -23.24059 -22.81642 -21.92476 -20.43148 -19.49013 -18.95977 -17.43915 -17.28138 -16.90497 -16.84015 -16.51260 -16.17142 -15.86240 -15.39960 -15.23931 -14.93177 -14.78855 -14.65336 -14.43504 -13.98232 -13.54395 -13.31749 -13.21484 -13.18202 -13.00167 -12.79933 -12.62343 -12.52453 -12.08401 -11.86897 -11.62978 -11.53407 -11.49456 -11.01423 -10.76796 -10.61610 -10.55250 -10.34379 -9.95276 -9.86576 -9.78625 -9.58763 -9.35495 -8.64192 -8.56880 -8.35229 -6.62484 -5.62318 -3.07443 0.72237 0.86171 2.22979 2.53268 3.17894 3.22054 3.48428 3.52082 3.56363 3.90325 4.14288 4.36087 4.44968 4.54038 4.59166 4.65739 4.79342 4.82594 4.86974 4.99837 5.05173 5.10052 5.24646 5.38133 5.46329 5.53821 5.54775 5.63899 5.69861 5.76575 5.88894 5.95944 5.96794 6.06851 6.21454 6.41979 6.50969 6.71337 6.80855 6.88585 7.23588 7.40229 7.75549 7.94652 8.09917 8.42881 8.52203 9.33439 9.95619 10.43704 11.43028 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.002392 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.820987 B =11701.911099 C =12819.964647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.238 4.238 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.914 5.914 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.125 3.875 12 C 0.071 3.929 13 H 0.085 0.915 14 O -0.542 6.542 15 C 0.083 3.917 16 N -0.606 5.606 17 C 0.074 3.926 18 C 0.521 3.479 19 O -0.507 6.507 20 C 0.043 3.957 21 O -0.280 6.280 22 C 0.100 3.900 23 C -0.186 4.186 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.116 4.116 27 C 0.073 3.927 28 F -0.128 7.128 29 H 0.031 0.969 30 H 0.040 0.960 31 H -0.006 1.006 32 H 0.251 0.749 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.369 0.631 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -21.019 -19.364 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.368 4.368 4 H 0.087 0.913 5 C -0.201 4.201 6 N -0.560 5.560 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.218 1.218 10 H -0.210 1.210 11 C -0.004 4.004 12 C 0.007 3.993 13 H 0.103 0.897 14 O -0.346 6.346 15 C -0.040 4.040 16 N -0.341 5.341 17 C -0.069 4.069 18 C 0.306 3.694 19 O -0.380 6.380 20 C -0.035 4.035 21 O -0.191 6.191 22 C 0.053 3.947 23 C -0.205 4.205 24 C -0.108 4.108 25 C -0.150 4.150 26 C -0.135 4.135 27 C 0.053 3.947 28 F -0.107 7.107 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.216 0.784 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.424 -20.318 -19.140 28.884 hybrid contribution 0.470 0.801 0.184 0.947 sum 7.894 -19.516 -18.956 28.329 Atomic orbital electron populations 1.20794 0.82755 0.95180 0.99421 1.43744 1.01623 1.00494 1.85649 1.19155 0.98202 0.85336 1.34078 0.91296 1.25000 0.98052 0.98505 0.98576 1.70054 1.19720 1.27085 1.39172 0.86321 0.78341 0.83841 0.77978 1.21143 1.21847 1.20999 1.21328 0.96946 0.89429 0.92712 1.23183 0.92893 0.85561 0.97653 0.89692 1.86548 1.28915 1.62930 1.56256 1.22458 1.02450 0.98145 0.80972 1.47597 1.15593 1.56099 1.14803 1.21857 0.92546 0.95702 0.96821 1.19720 0.82225 0.80241 0.87177 1.90738 1.44154 1.38047 1.65102 1.22602 0.84773 1.00513 0.95629 1.86255 1.33201 1.73848 1.25841 1.19118 0.93312 0.96997 0.85278 1.21192 1.00530 1.03296 0.95446 1.21020 0.96348 0.98590 0.94818 1.20943 0.94116 0.99725 1.00197 1.21068 1.01453 0.99648 0.91361 1.17041 0.87521 1.00139 0.90010 1.91548 1.70014 1.76530 1.72570 0.95029 0.94109 0.98759 0.93920 0.93955 0.93003 0.78364 0.89819 0.89570 0.92356 0.90264 0.91427 0.88792 0.89117 0.84476 0.84941 0.84795 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.98 59.85 0.54 4.60 16 2 N -0.59 -15.13 2.90 -181.12 -0.53 -15.65 16 3 C -0.24 -6.76 9.21 -15.06 -0.14 -6.90 16 4 H 0.07 1.95 7.58 -52.49 -0.40 1.55 16 5 C 0.00 -0.12 5.10 -17.43 -0.09 -0.21 16 6 N -0.91 -27.46 10.71 55.49 0.59 -26.86 16 7 Si 0.90 23.08 29.57 -169.99 -5.03 18.05 16 8 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 9 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 C 0.12 2.49 5.32 -4.04 -0.02 2.47 16 12 C 0.07 1.23 3.48 -26.73 -0.09 1.13 16 13 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 14 O -0.54 -11.16 11.38 -43.95 -0.50 -11.66 16 15 C 0.08 1.09 5.15 -4.04 -0.02 1.07 16 16 N -0.61 -7.18 2.83 -181.57 -0.51 -7.69 16 17 C 0.07 0.54 10.24 59.85 0.61 1.15 16 18 C 0.52 7.32 7.26 -10.98 -0.08 7.24 16 19 O -0.51 -9.41 14.87 -20.21 -0.30 -9.72 16 20 C 0.04 0.45 3.77 36.01 0.14 0.59 16 21 O -0.28 -3.87 9.54 -39.53 -0.38 -4.25 16 22 C 0.10 1.14 6.69 -39.18 -0.26 0.88 16 23 C -0.19 -1.46 9.04 -39.44 -0.36 -1.82 16 24 C -0.09 -0.56 10.04 -39.60 -0.40 -0.96 16 25 C -0.13 -0.84 10.04 -39.57 -0.40 -1.23 16 26 C -0.12 -0.96 10.02 -39.54 -0.40 -1.36 16 27 C 0.07 0.85 7.31 -39.30 -0.29 0.56 16 28 F -0.13 -1.81 17.11 2.25 0.04 -1.77 16 29 H 0.03 0.85 7.34 -51.93 -0.38 0.46 16 30 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 31 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 35 H 0.37 7.39 8.45 45.56 0.39 7.77 16 36 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.07 0.37 6.44 -51.93 -0.33 0.04 16 41 H 0.09 0.78 6.92 -51.93 -0.36 0.42 16 42 H 0.09 0.63 7.63 -51.93 -0.40 0.23 16 43 H 0.14 0.73 6.30 -52.49 -0.33 0.40 16 44 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 45 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -37.19 386.37 -7.96 -45.15 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.92 Total: 1.35 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.25 Total: 7.22 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.44 Total: -50.21 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.18 Total: -25.62 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.19 -7.96 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332678900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.767 kcal (2) G-P(sol) polarization free energy of solvation -37.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds