Wall clock time and date at job start Tue Mar 31 2020 22:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36928 * 120.00094 * 2 1 4 4 H 1.08002 * 119.99730 * 202.93956 * 3 2 1 5 5 C 1.38809 * 120.00264 * 22.92986 * 3 2 1 6 6 N 1.31616 * 120.00121 * 13.11310 * 5 3 2 7 7 Si 1.86806 * 120.00021 * 193.11592 * 5 3 2 8 8 H 1.48498 * 109.47258 * 60.00193 * 7 5 3 9 9 H 1.48499 * 109.46911 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46945 * 299.99724 * 7 5 3 11 11 C 1.46506 * 119.99622 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47168 * 89.99771 * 11 2 1 13 13 H 1.09003 * 109.47161 * 304.99597 * 12 11 2 14 14 O 1.42895 * 109.47470 * 64.99691 * 12 11 2 15 15 C 1.53004 * 109.46795 * 184.99851 * 12 11 2 16 16 N 1.46501 * 109.46862 * 179.97438 * 15 12 11 17 17 C 1.46501 * 120.00424 * 270.00062 * 16 15 12 18 18 C 1.34781 * 119.99693 * 89.99643 * 16 15 12 19 19 O 1.21279 * 120.00025 * 0.02562 * 18 16 15 20 20 C 1.50700 * 119.99647 * 179.97438 * 18 16 15 21 21 O 1.42907 * 109.46774 * 180.02562 * 20 18 16 22 22 C 1.35961 * 116.99794 * 180.02562 * 21 20 18 23 23 C 1.38664 * 120.06038 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.96207 * 180.02562 * 23 22 21 25 25 C 1.38253 * 120.10111 * 0.02562 * 24 23 22 26 26 C 1.38257 * 120.12633 * 359.97438 * 25 24 23 27 27 C 1.38339 * 120.02686 * 0.02562 * 26 25 24 28 28 F 1.35106 * 120.04659 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.46875 * 275.12651 * 1 2 3 30 30 H 1.08994 * 109.47483 * 35.12167 * 1 2 3 31 31 H 1.08997 * 109.47803 * 155.13072 * 1 2 3 32 32 H 0.96993 * 120.00267 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47076 * 329.99333 * 11 2 1 34 34 H 1.09000 * 109.46651 * 209.99975 * 11 2 1 35 35 H 0.96700 * 113.99634 * 59.99496 * 14 12 11 36 36 H 1.09000 * 109.46938 * 60.00351 * 15 12 11 37 37 H 1.08997 * 109.46744 * 299.99550 * 15 12 11 38 38 H 1.08997 * 109.46817 * 270.00476 * 17 16 15 39 39 H 1.09004 * 109.46889 * 29.99865 * 17 16 15 40 40 H 1.08990 * 109.47255 * 149.99752 * 17 16 15 41 41 H 1.08997 * 109.47216 * 60.01008 * 20 18 16 42 42 H 1.09002 * 109.47486 * 300.00579 * 20 18 16 43 43 H 1.07991 * 120.01863 * 0.04871 * 23 22 21 44 44 H 1.08004 * 119.94460 * 180.27512 * 24 23 22 45 45 H 1.08001 * 119.94086 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99049 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1656 1.2227 -0.3646 5 6 1.5380 2.3405 0.4683 6 7 0.4118 2.2606 1.1448 7 14 2.3131 4.0078 0.1384 8 1 2.4151 4.2250 -1.3270 9 1 1.4703 5.0729 0.7387 10 1 3.6697 4.0509 0.7409 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5060 -1.7542 -1.9823 14 8 3.3208 -0.7718 -2.0818 15 6 3.1059 -3.0934 -1.4456 16 7 3.3494 -3.5160 -2.8270 17 6 2.3245 -4.2689 -3.5543 18 6 4.5165 -3.2120 -3.4289 19 8 5.3651 -2.5891 -2.8267 20 6 4.7672 -3.6473 -4.8497 21 8 6.0644 -3.2098 -5.2599 22 6 6.4495 -3.5226 -6.5258 23 6 5.5970 -4.2358 -7.3549 24 6 5.9907 -4.5531 -8.6409 25 6 7.2336 -4.1610 -9.1022 26 6 8.0867 -3.4497 -8.2789 27 6 7.6979 -3.1293 -6.9905 28 9 8.5310 -2.4338 -6.1857 29 1 -0.3633 0.0918 1.0236 30 1 -0.3634 0.8405 -0.5912 31 1 -0.3634 -0.9323 -0.4322 32 1 -0.0155 3.0674 1.4724 33 1 1.6084 -2.0286 0.5130 34 1 3.1499 -1.1387 0.5133 35 1 4.1835 -0.6806 -1.6546 36 1 2.4434 -3.8089 -0.9586 37 1 4.0522 -3.0490 -0.9066 38 1 2.4755 -5.3364 -3.3937 39 1 1.3374 -3.9829 -3.1911 40 1 2.3981 -4.0476 -4.6189 41 1 4.0124 -3.2090 -5.5025 42 1 4.7142 -4.7342 -4.9115 43 1 4.6259 -4.5428 -6.9960 44 1 5.3248 -5.1048 -9.2880 45 1 7.5389 -4.4107 -10.1077 46 1 9.0570 -3.1441 -8.6416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332678900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:38 Heat of formation + Delta-G solvation = -125.817547 kcal Electronic energy + Delta-G solvation = -29610.622510 eV Core-core repulsion = 25222.910994 eV Total energy + Delta-G solvation = -4387.711516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.84964 -41.52132 -40.54491 -38.85775 -38.20751 -36.78290 -36.09076 -33.33839 -31.91297 -31.64040 -30.94783 -29.28949 -28.07623 -27.83725 -26.48503 -24.15259 -23.55145 -23.22576 -22.13391 -20.45530 -19.70415 -18.81495 -18.21029 -18.07577 -17.76686 -17.54654 -17.34603 -16.84375 -16.77230 -16.44416 -16.11732 -15.93577 -15.71242 -15.39035 -15.30020 -14.94654 -14.81066 -14.58928 -14.03026 -13.95115 -13.75033 -13.68281 -13.33482 -13.24591 -13.04219 -12.79591 -12.67206 -12.64467 -12.53352 -12.25722 -12.18641 -12.14774 -12.07415 -11.90744 -11.82646 -11.20279 -10.88387 -10.58993 -9.94850 -9.62656 -9.26266 -8.67521 -7.80861 -5.27372 0.12576 0.25151 1.40172 1.42768 1.45048 1.51855 1.55723 2.41945 2.51587 2.60798 3.24562 3.30832 3.36304 3.57496 3.76544 3.79345 3.83361 3.99253 4.01008 4.07482 4.23901 4.27857 4.29013 4.34033 4.46723 4.51808 4.57479 4.67600 4.80128 4.82152 4.93700 4.94790 4.97679 5.09271 5.24870 5.26211 5.34734 5.42522 5.45801 5.66644 5.67763 5.72441 6.17562 6.35237 6.35518 6.89503 7.12396 7.18598 7.90046 8.30999 9.21474 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.002392 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.820987 B =11701.911099 C =12819.964647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.613 5.613 3 C -0.240 4.240 4 H 0.062 0.938 5 C -0.059 4.059 6 N -0.941 5.941 7 Si 0.962 3.038 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.121 3.879 12 C 0.081 3.919 13 H 0.085 0.915 14 O -0.565 6.565 15 C 0.093 3.907 16 N -0.602 5.602 17 C 0.063 3.937 18 C 0.508 3.492 19 O -0.568 6.568 20 C 0.046 3.954 21 O -0.323 6.323 22 C 0.072 3.928 23 C -0.183 4.183 24 C -0.081 4.081 25 C -0.125 4.125 26 C -0.119 4.119 27 C 0.024 3.976 28 F -0.158 7.158 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.037 0.963 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.367 0.633 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.131 0.869 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.168 0.832 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 -24.065 -22.189 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.335 5.335 3 C -0.371 4.371 4 H 0.080 0.920 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.791 3.209 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.006 4.006 12 C 0.018 3.982 13 H 0.102 0.898 14 O -0.370 6.370 15 C -0.031 4.031 16 N -0.336 5.336 17 C -0.078 4.078 18 C 0.295 3.705 19 O -0.446 6.446 20 C -0.031 4.031 21 O -0.237 6.237 22 C 0.026 3.974 23 C -0.201 4.201 24 C -0.098 4.098 25 C -0.143 4.143 26 C -0.137 4.137 27 C 0.005 3.995 28 F -0.137 7.137 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.214 0.786 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.183 0.817 44 H 0.189 0.811 45 H 0.186 0.814 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.336 -23.433 -22.001 32.761 hybrid contribution 0.782 1.607 0.958 2.028 sum 7.118 -21.827 -21.042 31.142 Atomic orbital electron populations 1.20551 0.82675 0.95954 0.97688 1.43989 1.02057 1.01550 1.85926 1.19361 0.98041 0.86866 1.32817 0.92011 1.25682 0.98935 1.01481 0.99244 1.70195 1.20871 1.27327 1.40467 0.85417 0.77726 0.80334 0.77423 1.21379 1.21697 1.20410 1.21552 0.96346 0.87928 0.94758 1.23026 0.92776 0.87274 0.95127 0.89753 1.86511 1.29130 1.64399 1.56970 1.22198 1.01988 0.96435 0.82469 1.47697 1.15980 1.55536 1.14360 1.22243 0.91191 0.96786 0.97597 1.20528 0.82085 0.79326 0.88533 1.90707 1.46284 1.40892 1.66734 1.22752 0.84312 1.02792 0.93250 1.86185 1.34834 1.75119 1.27521 1.19440 0.94026 0.98781 0.85149 1.21565 1.00952 1.01985 0.95589 1.21540 0.96576 0.97310 0.94409 1.21418 0.93734 0.97959 1.01150 1.21356 1.02572 0.99567 0.90244 1.17693 0.88259 1.02196 0.91374 1.91455 1.70978 1.77578 1.73648 0.97465 0.97276 0.94494 0.94450 0.91038 0.93981 0.78600 0.86066 0.91172 0.89366 0.89777 0.89291 0.86489 0.85192 0.81650 0.81147 0.81446 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.98 127.77 1.15 9.91 16 2 N -0.61 -31.29 2.90 -726.94 -2.11 -33.40 16 3 C -0.24 -13.87 9.21 84.03 0.77 -13.10 16 4 H 0.06 3.59 7.58 -2.91 -0.02 3.57 16 5 C -0.06 -3.51 5.10 84.86 0.43 -3.07 16 6 N -0.94 -57.70 10.71 21.65 0.23 -57.46 16 7 Si 0.96 48.48 29.57 68.60 2.03 50.50 16 8 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 9 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 C 0.12 4.74 5.32 86.38 0.46 5.20 16 12 C 0.08 2.71 3.48 30.59 0.11 2.81 16 13 H 0.08 2.86 8.14 -2.39 -0.02 2.85 16 14 O -0.57 -23.68 11.38 -140.65 -1.60 -25.28 16 15 C 0.09 2.28 5.15 86.38 0.44 2.73 16 16 N -0.60 -12.93 2.83 -846.76 -2.39 -15.32 16 17 C 0.06 0.65 10.24 127.77 1.31 1.96 16 18 C 0.51 13.97 7.26 87.66 0.64 14.61 16 19 O -0.57 -22.06 14.87 21.61 0.32 -21.74 16 20 C 0.05 0.88 3.77 71.24 0.27 1.15 16 21 O -0.32 -9.14 9.54 -74.08 -0.71 -9.85 16 22 C 0.07 1.62 6.69 22.53 0.15 1.77 16 23 C -0.18 -2.31 9.04 22.36 0.20 -2.11 16 24 C -0.08 -0.66 10.04 22.26 0.22 -0.44 16 25 C -0.12 -1.17 10.04 22.28 0.22 -0.94 16 26 C -0.12 -1.86 10.02 22.30 0.22 -1.63 16 27 C 0.02 0.59 7.31 22.45 0.16 0.76 16 28 F -0.16 -4.92 17.11 44.97 0.77 -4.15 16 29 H 0.01 0.39 7.34 -2.39 -0.02 0.37 16 30 H 0.01 0.47 7.34 -2.39 -0.02 0.45 16 31 H 0.04 1.48 8.03 -2.39 -0.02 1.46 16 32 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 34 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 35 H 0.37 15.47 8.45 -74.06 -0.63 14.84 16 36 H 0.12 2.09 8.07 -2.39 -0.02 2.07 16 37 H 0.07 2.00 7.42 -2.39 -0.02 1.98 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.83 8.07 -2.38 -0.02 0.81 16 40 H 0.09 0.56 6.44 -2.39 -0.02 0.54 16 41 H 0.12 1.61 6.92 -2.39 -0.02 1.59 16 42 H 0.13 1.34 7.63 -2.39 -0.02 1.32 16 43 H 0.17 0.99 6.30 -2.92 -0.02 0.97 16 44 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 46 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -87.59 386.37 3.68 -83.91 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.38 Total: 13.18 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.77 Total: 19.60 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -4.27 Total: -106.19 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -1.99 Total: -56.86 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.77 Total: -4.15 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.50 kcal Total: -87.59 3.68 -83.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332678900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.906 kcal (2) G-P(sol) polarization free energy of solvation -87.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds