Wall clock time and date at job start Tue Mar 31 2020 22:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36944 * 119.99879 * 2 1 4 4 H 1.07999 * 119.99830 * 202.32537 * 3 2 1 5 5 C 1.38813 * 119.99537 * 22.33309 * 3 2 1 6 6 N 1.31617 * 120.00154 * 11.36399 * 5 3 2 7 7 Si 1.86800 * 119.99674 * 191.36305 * 5 3 2 8 8 H 1.48508 * 109.46995 * 60.00032 * 7 5 3 9 9 H 1.48498 * 109.47211 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47433 * 300.00252 * 7 5 3 11 11 C 1.46497 * 120.00252 * 179.97438 * 2 1 3 12 12 C 1.52990 * 109.47572 * 270.00034 * 11 2 1 13 13 H 1.09000 * 109.47276 * 60.00006 * 12 11 2 14 14 O 1.42902 * 109.47396 * 300.00113 * 12 11 2 15 15 C 1.53004 * 109.47650 * 180.02562 * 12 11 2 16 16 N 1.46496 * 109.47116 * 185.00489 * 15 12 11 17 17 C 1.46500 * 119.99652 * 269.99255 * 16 15 12 18 18 C 1.34770 * 120.00306 * 90.00190 * 16 15 12 19 19 O 1.21280 * 120.00249 * 359.97438 * 18 16 15 20 20 C 1.50710 * 120.00043 * 179.97438 * 18 16 15 21 21 O 1.42902 * 109.47057 * 179.97438 * 20 18 16 22 22 C 1.35955 * 116.99705 * 180.02562 * 21 20 18 23 23 C 1.38657 * 120.06292 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.96942 * 180.02562 * 23 22 21 25 25 C 1.38262 * 120.09551 * 359.97438 * 24 23 22 26 26 C 1.38258 * 120.12338 * 359.97438 * 25 24 23 27 27 C 1.38330 * 120.03244 * 0.02562 * 26 25 24 28 28 F 1.35095 * 120.04967 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47539 * 274.20748 * 1 2 3 30 30 H 1.09003 * 109.47619 * 34.21209 * 1 2 3 31 31 H 1.09005 * 109.47288 * 154.20836 * 1 2 3 32 32 H 0.97000 * 119.99330 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47265 * 149.99590 * 11 2 1 34 34 H 1.08998 * 109.46952 * 30.00583 * 11 2 1 35 35 H 0.96698 * 113.99709 * 299.99544 * 14 12 11 36 36 H 1.08991 * 109.46953 * 64.99806 * 15 12 11 37 37 H 1.09000 * 109.46449 * 304.99962 * 15 12 11 38 38 H 1.08993 * 109.47594 * 270.00308 * 17 16 15 39 39 H 1.09007 * 109.47213 * 30.00606 * 17 16 15 40 40 H 1.09003 * 109.46985 * 150.00466 * 17 16 15 41 41 H 1.09005 * 109.46702 * 59.99580 * 20 18 16 42 42 H 1.08997 * 109.46812 * 299.99957 * 20 18 16 43 43 H 1.08000 * 120.01762 * 0.03968 * 23 22 21 44 44 H 1.07998 * 119.95284 * 180.27118 * 24 23 22 45 45 H 1.08005 * 119.94100 * 179.97438 * 25 24 23 46 46 H 1.08008 * 119.98186 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1689 1.2210 -0.3553 5 6 1.5335 2.3430 0.4568 6 7 0.3839 2.2691 1.0934 7 14 2.3361 4.0049 0.1680 8 1 2.4909 4.2329 -1.2913 9 1 1.4838 5.0737 0.7479 10 1 3.6715 4.0292 0.8171 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4431 13 1 1.5001 -1.8399 1.9571 14 8 3.2248 -0.7136 2.1164 15 6 3.2182 -3.0345 1.4437 16 7 3.3580 -3.5170 2.8199 17 6 4.5223 -3.1259 3.6184 18 6 2.4157 -4.3209 3.3511 19 8 1.4517 -4.6444 2.6902 20 6 2.5599 -4.8177 4.7667 21 8 1.4431 -5.6458 5.0969 22 6 1.4181 -6.1784 6.3476 23 6 2.4470 -5.9100 7.2375 24 6 2.4200 -6.4528 8.5079 25 6 1.3680 -7.2629 8.8935 26 6 0.3395 -7.5322 8.0097 27 6 0.3613 -6.9915 6.7366 28 9 -0.6438 -7.2540 5.8728 29 1 -0.3634 0.0754 1.0249 30 1 -0.3634 0.8498 -0.5778 31 1 -0.3634 -0.9253 -0.4472 32 1 -0.0467 3.0777 1.4123 33 1 3.1499 -1.1386 -0.5134 34 1 1.6085 -2.0285 -0.5130 35 1 4.0872 -0.5453 1.7129 36 1 4.2063 -2.8831 1.0095 37 1 2.6711 -3.7704 0.8545 38 1 5.3217 -3.8528 3.4756 39 1 4.8659 -2.1411 3.3017 40 1 4.2455 -3.0926 4.6722 41 1 2.5958 -3.9677 5.4482 42 1 3.4801 -5.3950 4.8571 43 1 3.2691 -5.2769 6.9379 44 1 3.2193 -6.2401 9.2023 45 1 1.3496 -7.6862 9.8870 46 1 -0.4814 -8.1650 8.3134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332678918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:42 Heat of formation + Delta-G solvation = -98.369437 kcal Electronic energy + Delta-G solvation = -29587.785307 eV Core-core repulsion = 25201.264030 eV Total energy + Delta-G solvation = -4386.521277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.94421 -40.65870 -39.62115 -37.78756 -37.11531 -35.35893 -34.41890 -31.45412 -31.09371 -30.82545 -29.87431 -28.28410 -26.91020 -25.83330 -25.15621 -23.20723 -22.79801 -21.96689 -20.41374 -19.45365 -18.92579 -17.42234 -17.24176 -16.87344 -16.80044 -16.56667 -16.09630 -15.85508 -15.43691 -15.19442 -14.87239 -14.72367 -14.66463 -14.45083 -13.91833 -13.65792 -13.32539 -13.21940 -13.08854 -12.96763 -12.68318 -12.58771 -12.44981 -12.06440 -11.83410 -11.57077 -11.49567 -11.43554 -11.11250 -10.81023 -10.61850 -10.47060 -10.24019 -10.00286 -9.88756 -9.83990 -9.55940 -9.33359 -8.55263 -8.51875 -8.39083 -6.65170 -5.61764 -3.06468 0.74435 0.88183 2.25656 2.50829 3.20099 3.26416 3.42780 3.47608 3.48875 3.92440 4.17348 4.38269 4.48182 4.56278 4.57498 4.69279 4.82108 4.84727 4.96292 5.04061 5.10165 5.14508 5.33420 5.39575 5.56572 5.56787 5.62432 5.66237 5.78726 5.81212 5.95182 5.98221 6.01020 6.10153 6.23582 6.43865 6.56182 6.82400 6.87382 6.90853 7.26906 7.45524 7.80005 7.88232 8.08869 8.41113 8.50370 9.31855 9.94832 10.44161 11.44009 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.002227 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.807548 B =12570.414482 C =12686.181599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.591 5.591 3 C -0.242 4.242 4 H 0.065 0.935 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.285 1.285 11 C 0.124 3.876 12 C 0.071 3.929 13 H 0.090 0.910 14 O -0.535 6.535 15 C 0.083 3.917 16 N -0.601 5.601 17 C 0.076 3.924 18 C 0.513 3.487 19 O -0.513 6.513 20 C 0.043 3.957 21 O -0.281 6.281 22 C 0.100 3.900 23 C -0.185 4.185 24 C -0.089 4.089 25 C -0.131 4.131 26 C -0.117 4.117 27 C 0.073 3.927 28 F -0.128 7.128 29 H 0.028 0.972 30 H 0.046 0.954 31 H -0.004 1.004 32 H 0.251 0.749 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.357 0.643 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 -19.618 14.405 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.313 5.313 3 C -0.371 4.371 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.211 1.211 11 C -0.005 4.005 12 C 0.008 3.992 13 H 0.108 0.892 14 O -0.337 6.337 15 C -0.040 4.040 16 N -0.336 5.336 17 C -0.067 4.067 18 C 0.298 3.702 19 O -0.387 6.387 20 C -0.036 4.036 21 O -0.193 6.193 22 C 0.053 3.947 23 C -0.204 4.204 24 C -0.107 4.107 25 C -0.150 4.150 26 C -0.135 4.135 27 C 0.053 3.947 28 F -0.107 7.107 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.202 0.798 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.320 -19.642 14.273 25.666 hybrid contribution 0.976 1.056 -0.280 1.465 sum 9.296 -18.586 13.993 25.053 Atomic orbital electron populations 1.20812 0.82417 0.95546 0.99350 1.43863 1.01848 1.00342 1.85250 1.18999 0.97695 0.85105 1.35342 0.91748 1.25002 0.97767 0.98362 0.98474 1.70063 1.17869 1.26868 1.40438 0.86355 0.78453 0.84139 0.77597 1.21329 1.21810 1.21107 1.21452 0.96520 0.89508 0.93023 1.23219 0.94085 0.84282 0.97634 0.89201 1.86698 1.32114 1.59848 1.55045 1.22506 1.01705 0.98519 0.81245 1.47647 1.22681 1.48330 1.14945 1.21888 0.87506 1.01792 0.95520 1.19867 0.83231 0.79370 0.87699 1.90777 1.29655 1.56745 1.61570 1.22615 0.89437 0.95302 0.96202 1.86246 1.43987 1.61941 1.27104 1.19118 0.94833 0.95280 0.85501 1.21203 0.99314 1.04971 0.94928 1.21025 0.98408 0.96026 0.95281 1.20947 0.94041 1.00046 0.99937 1.21061 1.00617 1.00654 0.91205 1.17034 0.86768 1.01665 0.89272 1.91541 1.57834 1.92470 1.68854 0.95409 0.93570 0.98547 0.93899 0.93604 0.93599 0.79843 0.90307 0.89291 0.92715 0.89540 0.91561 0.88643 0.88942 0.84419 0.84914 0.84791 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.26 9.01 59.84 0.54 4.80 16 2 N -0.59 -15.08 2.87 -181.13 -0.52 -15.60 16 3 C -0.24 -6.60 9.02 -15.06 -0.14 -6.73 16 4 H 0.06 1.68 7.84 -52.49 -0.41 1.27 16 5 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 6 N -0.91 -27.33 10.59 55.49 0.59 -26.74 16 7 Si 0.90 22.15 29.57 -169.99 -5.03 17.12 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.12 2.49 5.43 -4.05 -0.02 2.47 16 12 C 0.07 1.32 3.48 -26.73 -0.09 1.23 16 13 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 14 O -0.53 -10.33 11.43 -35.23 -0.40 -10.74 16 15 C 0.08 1.16 5.06 -4.04 -0.02 1.14 16 16 N -0.60 -7.73 2.84 -181.57 -0.52 -8.25 16 17 C 0.08 0.65 10.06 59.85 0.60 1.26 16 18 C 0.51 7.67 7.75 -10.98 -0.09 7.58 16 19 O -0.51 -10.14 16.08 -14.35 -0.23 -10.37 16 20 C 0.04 0.48 3.77 36.01 0.14 0.61 16 21 O -0.28 -4.02 9.53 -39.51 -0.38 -4.40 16 22 C 0.10 1.17 6.69 -39.18 -0.26 0.91 16 23 C -0.19 -1.54 9.04 -39.45 -0.36 -1.89 16 24 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 25 C -0.13 -0.87 10.04 -39.57 -0.40 -1.27 16 26 C -0.12 -0.99 10.02 -39.54 -0.40 -1.38 16 27 C 0.07 0.86 7.31 -39.30 -0.29 0.57 16 28 F -0.13 -1.84 17.11 2.25 0.04 -1.80 16 29 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 30 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 31 H 0.00 -0.09 7.85 -51.93 -0.41 -0.50 16 32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 35 H 0.36 5.60 9.04 45.56 0.41 6.01 16 36 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.78 7.11 -51.93 -0.37 0.41 16 40 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 41 H 0.10 0.87 6.92 -51.93 -0.36 0.51 16 42 H 0.09 0.70 7.63 -51.93 -0.40 0.30 16 43 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 45 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 46 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -37.34 387.09 -7.71 -45.05 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.83 Total: 1.62 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.27 Total: 8.27 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.45 Total: -50.59 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.01 Total: -25.51 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.34 -7.71 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332678918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.317 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds