Wall clock time and date at job start Tue Mar 31 2020 22:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36944 * 119.99879 * 2 1 4 4 H 1.07999 * 119.99830 * 202.32537 * 3 2 1 5 5 C 1.38813 * 119.99537 * 22.33309 * 3 2 1 6 6 N 1.31617 * 120.00154 * 11.36399 * 5 3 2 7 7 Si 1.86800 * 119.99674 * 191.36305 * 5 3 2 8 8 H 1.48508 * 109.46995 * 60.00032 * 7 5 3 9 9 H 1.48498 * 109.47211 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47433 * 300.00252 * 7 5 3 11 11 C 1.46497 * 120.00252 * 179.97438 * 2 1 3 12 12 C 1.52990 * 109.47572 * 270.00034 * 11 2 1 13 13 H 1.09000 * 109.47276 * 60.00006 * 12 11 2 14 14 O 1.42902 * 109.47396 * 300.00113 * 12 11 2 15 15 C 1.53004 * 109.47650 * 180.02562 * 12 11 2 16 16 N 1.46496 * 109.47116 * 185.00489 * 15 12 11 17 17 C 1.46500 * 119.99652 * 269.99255 * 16 15 12 18 18 C 1.34770 * 120.00306 * 90.00190 * 16 15 12 19 19 O 1.21280 * 120.00249 * 359.97438 * 18 16 15 20 20 C 1.50710 * 120.00043 * 179.97438 * 18 16 15 21 21 O 1.42902 * 109.47057 * 179.97438 * 20 18 16 22 22 C 1.35955 * 116.99705 * 180.02562 * 21 20 18 23 23 C 1.38657 * 120.06292 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.96942 * 180.02562 * 23 22 21 25 25 C 1.38262 * 120.09551 * 359.97438 * 24 23 22 26 26 C 1.38258 * 120.12338 * 359.97438 * 25 24 23 27 27 C 1.38330 * 120.03244 * 0.02562 * 26 25 24 28 28 F 1.35095 * 120.04967 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47539 * 274.20748 * 1 2 3 30 30 H 1.09003 * 109.47619 * 34.21209 * 1 2 3 31 31 H 1.09005 * 109.47288 * 154.20836 * 1 2 3 32 32 H 0.97000 * 119.99330 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47265 * 149.99590 * 11 2 1 34 34 H 1.08998 * 109.46952 * 30.00583 * 11 2 1 35 35 H 0.96698 * 113.99709 * 299.99544 * 14 12 11 36 36 H 1.08991 * 109.46953 * 64.99806 * 15 12 11 37 37 H 1.09000 * 109.46449 * 304.99962 * 15 12 11 38 38 H 1.08993 * 109.47594 * 270.00308 * 17 16 15 39 39 H 1.09007 * 109.47213 * 30.00606 * 17 16 15 40 40 H 1.09003 * 109.46985 * 150.00466 * 17 16 15 41 41 H 1.09005 * 109.46702 * 59.99580 * 20 18 16 42 42 H 1.08997 * 109.46812 * 299.99957 * 20 18 16 43 43 H 1.08000 * 120.01762 * 0.03968 * 23 22 21 44 44 H 1.07998 * 119.95284 * 180.27118 * 24 23 22 45 45 H 1.08005 * 119.94100 * 179.97438 * 25 24 23 46 46 H 1.08008 * 119.98186 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1689 1.2210 -0.3553 5 6 1.5335 2.3430 0.4568 6 7 0.3839 2.2691 1.0934 7 14 2.3361 4.0049 0.1680 8 1 2.4909 4.2329 -1.2913 9 1 1.4838 5.0737 0.7479 10 1 3.6715 4.0292 0.8171 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4431 13 1 1.5001 -1.8399 1.9571 14 8 3.2248 -0.7136 2.1164 15 6 3.2182 -3.0345 1.4437 16 7 3.3580 -3.5170 2.8199 17 6 4.5223 -3.1259 3.6184 18 6 2.4157 -4.3209 3.3511 19 8 1.4517 -4.6444 2.6902 20 6 2.5599 -4.8177 4.7667 21 8 1.4431 -5.6458 5.0969 22 6 1.4181 -6.1784 6.3476 23 6 2.4470 -5.9100 7.2375 24 6 2.4200 -6.4528 8.5079 25 6 1.3680 -7.2629 8.8935 26 6 0.3395 -7.5322 8.0097 27 6 0.3613 -6.9915 6.7366 28 9 -0.6438 -7.2540 5.8728 29 1 -0.3634 0.0754 1.0249 30 1 -0.3634 0.8498 -0.5778 31 1 -0.3634 -0.9253 -0.4472 32 1 -0.0467 3.0777 1.4123 33 1 3.1499 -1.1386 -0.5134 34 1 1.6085 -2.0285 -0.5130 35 1 4.0872 -0.5453 1.7129 36 1 4.2063 -2.8831 1.0095 37 1 2.6711 -3.7704 0.8545 38 1 5.3217 -3.8528 3.4756 39 1 4.8659 -2.1411 3.3017 40 1 4.2455 -3.0926 4.6722 41 1 2.5958 -3.9677 5.4482 42 1 3.4801 -5.3950 4.8571 43 1 3.2691 -5.2769 6.9379 44 1 3.2193 -6.2401 9.2023 45 1 1.3496 -7.6862 9.8870 46 1 -0.4814 -8.1650 8.3134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332678918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:41 Heat of formation + Delta-G solvation = -125.135234 kcal Electronic energy + Delta-G solvation = -29588.945960 eV Core-core repulsion = 25201.264030 eV Total energy + Delta-G solvation = -4387.681929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.86667 -41.57309 -40.57787 -38.93588 -38.25854 -36.87096 -35.97164 -33.31138 -31.96624 -31.65974 -30.98297 -29.33773 -28.09457 -27.78615 -26.48408 -24.18295 -23.59026 -23.27663 -22.16185 -20.50838 -19.71671 -18.79348 -18.23190 -18.13417 -17.77681 -17.59719 -17.34428 -16.88231 -16.62172 -16.47222 -16.14433 -15.96422 -15.78476 -15.40482 -15.28341 -15.09279 -14.87264 -14.50074 -14.05469 -14.00167 -13.73268 -13.63623 -13.34674 -13.27903 -13.06572 -12.76799 -12.68703 -12.60970 -12.51767 -12.23539 -12.19828 -12.16340 -12.03945 -11.90353 -11.82936 -11.21805 -10.91433 -10.56241 -9.96023 -9.64336 -9.28077 -8.70869 -7.75162 -5.22093 0.11489 0.23686 1.34666 1.45471 1.48123 1.51766 1.57412 2.39603 2.56093 2.59632 3.22838 3.31264 3.40636 3.55669 3.77582 3.77921 3.82231 3.96138 3.98218 4.06078 4.18736 4.26722 4.31352 4.33082 4.47569 4.52239 4.55199 4.68892 4.79260 4.80896 4.90846 4.96259 5.00866 5.08195 5.21980 5.25264 5.28776 5.41523 5.45000 5.62973 5.66239 5.70096 6.14326 6.30137 6.36649 7.01375 7.10245 7.20188 7.90021 8.36478 9.30460 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.002227 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.807548 B =12570.414482 C =12686.181599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.610 5.610 3 C -0.236 4.236 4 H 0.081 0.919 5 C -0.064 4.064 6 N -0.948 5.948 7 Si 0.972 3.028 8 H -0.279 1.279 9 H -0.304 1.304 10 H -0.271 1.271 11 C 0.119 3.881 12 C 0.088 3.912 13 H 0.037 0.963 14 O -0.554 6.554 15 C 0.094 3.906 16 N -0.598 5.598 17 C 0.067 3.933 18 C 0.500 3.500 19 O -0.578 6.578 20 C 0.047 3.953 21 O -0.324 6.324 22 C 0.070 3.930 23 C -0.183 4.183 24 C -0.080 4.080 25 C -0.124 4.124 26 C -0.118 4.118 27 C 0.025 3.975 28 F -0.157 7.157 29 H -0.009 1.009 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.242 0.758 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.375 0.625 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.169 0.831 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.971 -20.304 16.222 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.367 4.367 4 H 0.099 0.901 5 C -0.257 4.257 6 N -0.596 5.596 7 Si 0.800 3.200 8 H -0.205 1.205 9 H -0.231 1.231 10 H -0.196 1.196 11 C -0.008 4.008 12 C 0.025 3.975 13 H 0.055 0.945 14 O -0.359 6.359 15 C -0.029 4.029 16 N -0.331 5.331 17 C -0.075 4.075 18 C 0.287 3.713 19 O -0.457 6.457 20 C -0.030 4.030 21 O -0.238 6.238 22 C 0.024 3.976 23 C -0.201 4.201 24 C -0.098 4.098 25 C -0.142 4.142 26 C -0.136 4.136 27 C 0.006 3.994 28 F -0.136 7.136 29 H 0.010 0.990 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.222 0.778 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.152 0.848 43 H 0.183 0.817 44 H 0.189 0.811 45 H 0.187 0.813 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.695 -20.352 16.102 28.890 hybrid contribution -0.277 1.183 -0.776 1.442 sum 12.418 -19.169 15.326 27.505 Atomic orbital electron populations 1.20495 0.83624 0.95665 0.96924 1.44100 1.01631 1.01991 1.85499 1.19435 0.98020 0.85718 1.33490 0.90120 1.25844 0.98583 1.02117 0.99163 1.70286 1.19771 1.26990 1.42567 0.85273 0.77652 0.79419 0.77623 1.20503 1.23105 1.19636 1.21676 0.97281 0.87469 0.94381 1.22731 0.92864 0.86668 0.95253 0.94478 1.86653 1.33323 1.60347 1.55590 1.22238 1.02873 0.95258 0.82546 1.47758 1.23367 1.47177 1.14785 1.22240 0.86584 1.02695 0.95936 1.20714 0.82454 0.79011 0.89077 1.90740 1.32271 1.59303 1.63432 1.22745 0.90263 0.96385 0.93604 1.86175 1.45723 1.62979 1.28926 1.19452 0.96276 0.96378 0.85446 1.21567 0.98749 1.04878 0.94933 1.21542 0.98948 0.94376 0.94954 1.21432 0.92898 0.99035 1.00786 1.21361 1.01844 1.00346 0.90095 1.17685 0.87145 1.04084 0.90519 1.91451 1.59166 1.92980 1.70031 0.99048 0.95946 0.95989 0.94922 0.90744 0.92757 0.77764 0.86094 0.90529 0.89208 0.89660 0.89688 0.86530 0.84810 0.81750 0.81145 0.81340 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.66 9.01 127.77 1.15 10.82 16 2 N -0.61 -31.30 2.87 -726.97 -2.09 -33.39 16 3 C -0.24 -12.79 9.02 84.03 0.76 -12.03 16 4 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 5 C -0.06 -3.64 5.13 84.86 0.44 -3.20 16 6 N -0.95 -59.17 10.59 21.65 0.23 -58.94 16 7 Si 0.97 45.75 29.57 68.60 2.03 47.78 16 8 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 9 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 C 0.12 4.68 5.43 86.38 0.47 5.15 16 12 C 0.09 3.25 3.48 30.59 0.11 3.36 16 13 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 14 O -0.55 -20.78 11.43 -148.98 -1.70 -22.49 16 15 C 0.09 2.51 5.06 86.38 0.44 2.95 16 16 N -0.60 -14.41 2.84 -846.76 -2.40 -16.81 16 17 C 0.07 0.89 10.06 127.77 1.29 2.18 16 18 C 0.50 15.01 7.75 87.66 0.68 15.69 16 19 O -0.58 -24.28 16.08 16.01 0.26 -24.02 16 20 C 0.05 0.99 3.77 71.24 0.27 1.26 16 21 O -0.32 -9.66 9.53 -74.01 -0.71 -10.36 16 22 C 0.07 1.66 6.69 22.53 0.15 1.81 16 23 C -0.18 -2.54 9.04 22.36 0.20 -2.34 16 24 C -0.08 -0.74 10.04 22.26 0.22 -0.51 16 25 C -0.12 -1.23 10.04 22.28 0.22 -1.01 16 26 C -0.12 -1.90 10.02 22.30 0.22 -1.68 16 27 C 0.03 0.63 7.31 22.45 0.16 0.80 16 28 F -0.16 -5.00 17.11 44.97 0.77 -4.23 16 29 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 30 H 0.02 1.27 7.19 -2.39 -0.02 1.25 16 31 H 0.02 1.04 7.85 -2.38 -0.02 1.02 16 32 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.07 2.51 8.03 -2.38 -0.02 2.49 16 34 H 0.05 2.03 7.86 -2.39 -0.02 2.01 16 35 H 0.37 10.76 9.04 -74.06 -0.67 10.09 16 36 H 0.12 2.22 8.07 -2.39 -0.02 2.20 16 37 H 0.08 2.27 7.42 -2.39 -0.02 2.25 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 1.22 7.11 -2.38 -0.02 1.20 16 40 H 0.08 0.84 6.44 -2.39 -0.02 0.82 16 41 H 0.12 1.87 6.92 -2.38 -0.02 1.85 16 42 H 0.13 1.58 7.63 -2.39 -0.02 1.56 16 43 H 0.17 1.24 6.30 -2.91 -0.02 1.22 16 44 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 45 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 46 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -89.56 387.09 3.50 -86.06 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.33 Total: 13.17 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 6.78 Total: 23.23 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -4.26 Total: -109.15 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -2.15 Total: -56.87 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.77 Total: -4.23 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -89.56 3.50 -86.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332678918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.071 kcal (2) G-P(sol) polarization free energy of solvation -89.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds