Wall clock time and date at job start Tue Mar 31 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35700 * 116.99591 * 2 1 4 4 C 1.38686 * 120.12692 * 0.02562 * 3 2 1 5 5 C 1.38061 * 120.10977 * 179.97438 * 4 3 2 6 6 C 1.38720 * 120.36970 * 0.02562 * 5 4 3 7 7 F 1.35099 * 119.87572 * 180.02562 * 6 5 4 8 8 C 1.37987 * 120.24791 * 359.74484 * 6 5 4 9 9 C 1.39720 * 119.87854 * 0.48501 * 8 6 5 10 10 C 1.47539 * 120.17842 * 179.78871 * 9 8 6 11 11 O 1.21594 * 119.99859 * 131.21627 * 10 9 8 12 12 N 1.34774 * 120.00103 * 311.49558 * 10 9 8 13 13 C 1.46501 * 120.00287 * 4.61406 * 12 10 9 14 14 C 1.46501 * 120.00294 * 184.61180 * 12 10 9 15 15 C 1.53001 * 109.46921 * 89.99731 * 14 12 10 16 16 O 1.42900 * 109.47134 * 65.00360 * 15 14 12 17 17 C 1.42895 * 114.00265 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47484 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.47013 * 64.99784 * 18 17 16 20 20 C 1.36940 * 120.00082 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99904 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00127 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00087 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00037 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47335 * 89.99252 * 24 22 20 26 26 H 1.48499 * 109.47278 * 209.99749 * 24 22 20 27 27 H 1.48501 * 109.47126 * 329.99367 * 24 22 20 28 28 H 1.09002 * 109.46754 * 59.99902 * 1 2 3 29 29 H 1.08994 * 109.46383 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46515 * 299.99917 * 1 2 3 31 31 H 1.07995 * 119.94358 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.80787 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.06027 * 180.27437 * 8 6 5 34 34 H 1.09002 * 109.47061 * 84.87936 * 13 12 10 35 35 H 1.08998 * 109.47380 * 204.88538 * 13 12 10 36 36 H 1.09007 * 109.46803 * 324.88063 * 13 12 10 37 37 H 1.08998 * 109.47803 * 209.99933 * 14 12 10 38 38 H 1.09003 * 109.46936 * 330.00380 * 14 12 10 39 39 H 1.09007 * 109.46802 * 185.00428 * 15 14 12 40 40 H 1.08997 * 109.47594 * 305.00481 * 15 14 12 41 41 H 1.08999 * 109.47321 * 300.00562 * 17 16 15 42 42 H 1.09000 * 109.47211 * 60.00216 * 17 16 15 43 43 H 1.08995 * 109.47185 * 185.00637 * 18 17 16 44 44 H 1.09009 * 109.46519 * 305.00528 * 18 17 16 45 45 H 0.96998 * 120.00179 * 0.02562 * 19 18 17 46 46 H 0.97001 * 120.00323 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2922 2.3739 0.0005 5 6 1.9193 3.6039 0.0011 6 6 3.3041 3.6851 0.0005 7 9 3.9073 4.8939 0.0016 8 6 4.0678 2.5358 0.0048 9 6 3.4440 1.2856 -0.0006 10 6 4.2542 0.0525 -0.0008 11 8 4.0053 -0.8385 0.7881 12 7 5.2736 -0.0838 -0.8718 13 6 5.6419 1.0304 -1.7488 14 6 6.0137 -1.3462 -0.9415 15 6 5.3517 -2.2695 -1.9663 16 8 5.4639 -1.6931 -3.2691 17 6 4.8748 -2.4806 -4.3058 18 6 5.0538 -1.7712 -5.6495 19 7 6.4796 -1.7013 -5.9787 20 6 6.8852 -1.1059 -7.1433 21 1 6.1539 -0.6875 -7.8189 22 6 8.2361 -1.0401 -7.4554 23 7 8.6258 -0.4683 -8.5749 24 14 9.5010 -1.7645 -6.2871 25 1 9.7430 -3.1867 -6.6394 26 1 10.7713 -1.0037 -6.3992 27 1 8.9941 -1.6790 -4.8939 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2137 2.3186 0.0005 32 1 1.3282 4.5078 0.0019 33 1 5.1458 2.6026 0.0088 34 1 6.3189 1.7010 -1.2195 35 1 6.1366 0.6435 -2.6397 36 1 4.7441 1.5758 -2.0397 37 1 7.0426 -1.1483 -1.2420 38 1 6.0069 -1.8259 0.0373 39 1 5.8475 -3.2402 -1.9545 40 1 4.2988 -2.3962 -1.7146 41 1 5.3609 -3.4555 -4.3424 42 1 3.8120 -2.6121 -4.1028 43 1 4.5283 -2.3264 -6.4264 44 1 4.6460 -0.7623 -5.5849 45 1 7.1364 -2.0774 -5.3720 46 1 9.5698 -0.4227 -8.7932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333236172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:10 Heat of formation + Delta-G solvation = -130.762227 kcal Electronic energy + Delta-G solvation = -29987.792959 eV Core-core repulsion = 25599.867025 eV Total energy + Delta-G solvation = -4387.925934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.87755 -41.80838 -40.36931 -39.07009 -38.21073 -36.89966 -36.21604 -33.70591 -32.99819 -31.12400 -30.88364 -29.59093 -28.18275 -27.63059 -25.51135 -25.14736 -23.74202 -23.14751 -22.82304 -20.92378 -19.74434 -19.10724 -18.74522 -18.26668 -17.78905 -17.41028 -17.23580 -16.93635 -16.76203 -16.55585 -16.42268 -16.00497 -15.80515 -15.71153 -15.40584 -15.02433 -14.73479 -14.61329 -14.39005 -14.10289 -13.92294 -13.73895 -13.69698 -13.47273 -13.33782 -13.06870 -12.82618 -12.80947 -12.74854 -12.49158 -12.23850 -12.13842 -11.93192 -11.89216 -11.72654 -11.05915 -11.00173 -10.54768 -10.27403 -9.76120 -9.28255 -9.23895 -8.01125 -5.33976 -0.28892 0.06436 1.40044 1.42829 1.51127 1.51471 1.90197 2.19160 2.43341 2.50727 2.72848 3.11095 3.31007 3.38541 3.61576 3.67033 3.84382 3.98405 4.02507 4.10421 4.22820 4.26633 4.30022 4.32776 4.38177 4.39867 4.44378 4.50956 4.52340 4.59986 4.62433 4.71460 4.78472 4.86441 4.93734 4.97590 4.99343 5.02556 5.10154 5.42283 5.54870 5.76102 6.16325 6.21919 6.26809 6.33966 7.00643 7.09774 7.85780 8.06391 9.20478 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002862 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.186917 B = 9781.429385 C =10439.834828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.155 3.845 4 C -0.178 4.178 5 C -0.080 4.080 6 C 0.044 3.956 7 F -0.142 7.142 8 C -0.084 4.084 9 C -0.161 4.161 10 C 0.566 3.434 11 O -0.563 6.563 12 N -0.599 5.599 13 C 0.078 3.922 14 C 0.117 3.883 15 C 0.046 3.954 16 O -0.394 6.394 17 C 0.064 3.936 18 C 0.155 3.845 19 N -0.753 5.753 20 C -0.234 4.234 21 H 0.056 0.944 22 C -0.064 4.064 23 N -0.985 5.985 24 Si 0.956 3.044 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.250 1.250 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.024 0.976 45 H 0.368 0.632 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.608 4.682 23.925 30.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.108 3.892 4 C -0.197 4.197 5 C -0.098 4.098 6 C 0.025 3.975 7 F -0.121 7.121 8 C -0.103 4.103 9 C -0.165 4.165 10 C 0.355 3.645 11 O -0.443 6.443 12 N -0.331 5.331 13 C -0.064 4.064 14 C -0.005 4.005 15 C -0.031 4.031 16 O -0.313 6.313 17 C -0.013 4.013 18 C 0.029 3.971 19 N -0.399 5.399 20 C -0.365 4.365 21 H 0.074 0.926 22 C -0.255 4.255 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.175 1.175 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.195 0.805 32 H 0.191 0.809 33 H 0.173 0.827 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.201 0.799 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.589 4.326 24.103 30.150 hybrid contribution 0.868 -0.207 0.005 0.892 sum -16.721 4.119 24.108 29.627 Atomic orbital electron populations 1.23490 0.75650 1.05840 1.03101 1.86185 1.24107 1.26303 1.87226 1.19191 0.90609 0.85971 0.93463 1.21390 1.02123 0.89762 1.06391 1.21449 0.92189 1.00017 0.96169 1.17496 0.91687 0.80056 1.08306 1.91512 1.83896 1.42185 1.94471 1.21258 1.01678 0.89345 0.98064 1.18961 0.91579 0.93371 1.12567 1.18236 0.79745 0.86430 0.80078 1.90749 1.69742 1.43436 1.40376 1.47747 1.32438 1.15353 1.37550 1.22075 1.01426 0.88667 0.94274 1.21653 0.96044 0.83776 0.99076 1.22973 0.99973 0.97129 0.83059 1.87952 1.79922 1.47889 1.15575 1.22692 0.97891 0.94100 0.86600 1.20824 0.84760 0.98210 0.93303 1.42628 1.03593 1.71199 1.22496 1.19059 0.92180 1.28765 0.96534 0.92588 1.25495 0.99004 1.01896 0.99114 1.69885 1.15589 1.51481 1.26604 0.85388 0.78383 0.77908 0.80036 1.20484 1.22227 1.17498 0.90637 0.87017 0.90480 0.80550 0.80928 0.82651 0.90512 0.90655 0.90986 0.88346 0.87901 0.90751 0.93930 0.92397 0.90993 0.93459 0.95747 0.79901 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.16 9.52 -80.75 -0.77 -7.92 16 3 C 0.16 3.22 6.67 22.83 0.15 3.37 16 4 C -0.18 -2.36 9.03 22.33 0.20 -2.16 16 5 C -0.08 -1.02 10.01 22.34 0.22 -0.80 16 6 C 0.04 0.77 7.28 22.33 0.16 0.93 16 7 F -0.14 -2.69 17.26 44.97 0.78 -1.92 16 8 C -0.08 -1.64 7.74 22.57 0.17 -1.46 16 9 C -0.16 -3.77 4.92 -20.01 -0.10 -3.87 16 10 C 0.57 15.80 6.96 86.70 0.60 16.40 16 11 O -0.56 -19.06 16.06 5.44 0.09 -18.97 16 12 N -0.60 -15.09 2.84 -850.52 -2.41 -17.50 16 13 C 0.08 1.77 8.82 127.77 1.13 2.90 16 14 C 0.12 2.77 5.83 86.38 0.50 3.28 16 15 C 0.05 1.16 6.28 71.98 0.45 1.62 16 16 O -0.39 -12.24 9.21 -148.98 -1.37 -13.61 16 17 C 0.06 1.90 6.07 71.98 0.44 2.34 16 18 C 0.16 5.95 6.65 86.38 0.57 6.52 16 19 N -0.75 -35.92 5.35 -343.45 -1.84 -37.76 16 20 C -0.23 -13.61 10.47 84.03 0.88 -12.73 16 21 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 22 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 23 N -0.98 -63.75 13.97 21.65 0.30 -63.45 16 24 Si 0.96 45.98 27.74 68.60 1.90 47.88 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 28 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.52 7.66 -2.39 -0.02 0.50 16 31 H 0.18 1.09 6.29 -2.91 -0.02 1.07 16 32 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.16 2.66 6.25 -2.91 -0.02 2.64 16 34 H 0.08 1.37 7.05 -2.39 -0.02 1.35 16 35 H 0.07 2.03 7.22 -2.39 -0.02 2.01 16 36 H 0.07 1.60 6.25 -2.38 -0.01 1.59 16 37 H 0.10 2.15 8.07 -2.39 -0.02 2.13 16 38 H 0.10 2.35 7.36 -2.39 -0.02 2.33 16 39 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.37 16.89 5.53 -92.71 -0.51 16.38 16 46 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -79.36 385.50 4.09 -75.27 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.44 Total: 23.75 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.97 Total: 14.24 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -3.95 Total: -118.71 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -2.05 Total: -40.51 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -79.36 4.09 -75.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333236172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.491 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds