Wall clock time and date at job start Tue Mar 31 2020 22:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00068 * 2 1 4 4 C 1.53003 * 109.46751 * 264.47403 * 3 2 1 5 5 H 1.09004 * 112.96385 * 294.79183 * 4 3 2 6 6 C 1.53947 * 113.77195 * 66.46850 * 4 3 2 7 7 C 1.53942 * 86.29021 * 137.90964 * 6 4 3 8 8 N 1.47580 * 113.77104 * 163.11484 * 4 3 2 9 9 C 1.34777 * 134.49238 * 41.05888 * 8 4 3 10 10 O 1.21277 * 119.99750 * 5.13859 * 9 8 4 11 11 C 1.50702 * 119.99898 * 185.13672 * 9 8 4 12 12 S 1.80999 * 109.47185 * 185.24847 * 11 9 8 13 13 C 1.76196 * 99.99992 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00056 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99852 * 179.97438 * 13 12 11 16 16 N 1.31635 * 120.00265 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00006 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46863 * 89.99846 * 17 15 13 19 19 H 1.48500 * 109.46977 * 209.99511 * 17 15 13 20 20 H 1.48494 * 109.47361 * 330.00124 * 17 15 13 21 21 C 1.34776 * 119.99863 * 179.97438 * 2 1 3 22 22 O 1.21282 * 120.00003 * 182.69001 * 21 2 1 23 23 C 1.50697 * 119.99995 * 2.68987 * 21 2 1 24 24 C 1.53871 * 110.03384 * 193.89670 * 23 21 2 25 25 C 1.54259 * 106.64216 * 240.68996 * 24 23 21 26 26 C 1.54963 * 104.16271 * 336.44713 * 25 24 23 27 27 C 1.54266 * 110.03299 * 76.73156 * 23 21 2 28 28 H 1.09001 * 109.47143 * 267.24457 * 1 2 3 29 29 H 1.09006 * 109.46851 * 27.23512 * 1 2 3 30 30 H 1.08997 * 109.47388 * 147.23638 * 1 2 3 31 31 H 1.09003 * 109.47009 * 24.46726 * 3 2 1 32 32 H 1.08999 * 109.47126 * 144.47369 * 3 2 1 33 33 H 1.09005 * 113.73864 * 252.25426 * 6 4 3 34 34 H 1.08994 * 113.74216 * 23.45631 * 6 4 3 35 35 H 1.09002 * 113.76849 * 90.69266 * 7 6 4 36 36 H 1.09004 * 113.76712 * 221.98172 * 7 6 4 37 37 H 1.08997 * 109.47313 * 305.24927 * 11 9 8 38 38 H 1.09002 * 109.47231 * 65.24631 * 11 9 8 39 39 H 0.96994 * 119.99901 * 180.02562 * 16 15 13 40 40 H 1.09004 * 110.02096 * 315.29124 * 23 21 2 41 41 H 1.09000 * 110.03295 * 0.02562 * 24 23 21 42 42 H 1.09010 * 110.03457 * 121.38093 * 24 23 21 43 43 H 1.09004 * 110.48389 * 95.09391 * 25 24 23 44 44 H 1.09004 * 110.49282 * 217.73409 * 25 24 23 45 45 H 1.09000 * 110.71685 * 279.56889 * 26 25 24 46 46 H 1.08994 * 110.92553 * 156.29433 * 26 25 24 47 47 H 1.09006 * 110.48532 * 261.57167 * 27 23 21 48 48 H 1.08998 * 110.48595 * 24.08012 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5728 1.6409 -1.4359 5 1 3.2759 0.9404 -1.8868 6 6 1.3621 1.9664 -2.3292 7 6 2.2053 3.1327 -2.8754 8 7 2.9539 3.0568 -1.6032 9 6 3.6882 3.9286 -0.8840 10 8 4.2770 3.5524 0.1072 11 6 3.7777 5.3709 -1.3117 12 16 4.9495 6.2451 -0.2446 13 6 4.8601 7.8578 -0.9488 14 1 4.2099 8.0442 -1.7907 15 6 5.6255 8.8886 -0.4215 16 7 5.5585 10.0936 -0.9471 17 14 6.7508 8.5660 1.0343 18 1 8.0907 8.1558 0.5427 19 1 6.8785 9.8037 1.8449 20 1 6.1779 7.4822 1.8723 21 6 2.1389 -1.1672 0.0005 22 8 3.3507 -1.1678 0.0498 23 6 1.3866 -2.4716 -0.0601 24 6 2.3240 -3.6379 0.2987 25 6 2.3667 -4.5654 -0.9332 26 6 1.0457 -4.2602 -1.6836 27 6 0.8922 -2.7301 -1.4984 28 1 -0.3633 -0.0494 1.0265 29 1 -0.3633 0.9138 -0.4703 30 1 -0.3634 -0.8641 -0.5561 31 1 1.5692 2.0511 0.4256 32 1 3.1035 1.1652 0.5971 33 1 1.1443 1.1974 -3.0705 34 1 0.4794 2.2832 -1.7737 35 1 2.8013 2.8720 -3.7500 36 1 1.6440 4.0583 -3.0037 37 1 4.1192 5.4228 -2.3455 38 1 2.7951 5.8357 -1.2299 39 1 6.0936 10.8138 -0.5788 40 1 0.5411 -2.4470 0.6273 41 1 3.3229 -3.2604 0.5172 42 1 1.9334 -4.1793 1.1604 43 1 3.2256 -4.3269 -1.5606 44 1 2.3978 -5.6100 -0.6234 45 1 0.2107 -4.7904 -1.2256 46 1 1.1303 -4.5149 -2.7400 47 1 -0.1524 -2.4363 -1.6013 48 1 1.5112 -2.1928 -2.2169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344137547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:20 Heat of formation + Delta-G solvation = -42.482564 kcal Electronic energy + Delta-G solvation = -27466.867876 eV Core-core repulsion = 23648.983212 eV Total energy + Delta-G solvation = -3817.884664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.89649 -39.99288 -37.71894 -37.24271 -35.73492 -32.43545 -31.14553 -30.21068 -29.11254 -28.70629 -28.10178 -26.78701 -25.60227 -23.97832 -22.11722 -21.45718 -21.06260 -19.19012 -18.79177 -17.83068 -17.59299 -16.80417 -16.57872 -16.21987 -15.79652 -15.36557 -15.07519 -14.96605 -14.67933 -14.41850 -13.88678 -13.82553 -13.78636 -13.34286 -13.26006 -13.03184 -12.83781 -12.71069 -12.46415 -12.12769 -12.08246 -11.89056 -11.69714 -11.67573 -11.49400 -11.39538 -11.25227 -11.21522 -11.00112 -10.93126 -10.83952 -10.60014 -9.95153 -9.84114 -9.40643 -9.06628 -8.99755 -8.58010 -8.49117 -6.91414 -6.28559 -4.00254 2.33220 2.42025 2.78131 2.99137 3.19085 3.34318 3.51958 3.58685 4.03214 4.15124 4.17910 4.22483 4.33669 4.50375 4.55946 4.68079 4.73410 4.84326 4.91468 4.92209 5.01980 5.04573 5.05909 5.09269 5.10555 5.16110 5.22443 5.27082 5.29621 5.33115 5.40790 5.44551 5.46924 5.52935 5.69700 5.73459 5.75806 5.81843 5.87333 5.91877 5.94699 6.02357 6.03622 6.28830 7.08158 7.76647 7.93768 7.94535 8.41640 8.45856 9.17681 10.80580 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.002169 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.710258 B =12908.699135 C =13445.975597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.612 5.612 3 C 0.116 3.884 4 C 0.125 3.875 5 H 0.092 0.908 6 C -0.147 4.147 7 C 0.104 3.896 8 N -0.646 5.646 9 C 0.552 3.448 10 O -0.514 6.514 11 C -0.115 4.115 12 S -0.142 6.142 13 C -0.520 4.520 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.880 5.880 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.516 3.484 22 O -0.529 6.529 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.111 4.111 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.164 -28.363 -3.790 33.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.346 5.346 3 C -0.007 4.007 4 C 0.021 3.979 5 H 0.110 0.890 6 C -0.185 4.185 7 C -0.019 4.019 8 N -0.385 5.385 9 C 0.341 3.659 10 O -0.388 6.388 11 C -0.265 4.265 12 S 0.084 5.916 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C 0.304 3.696 22 O -0.404 6.404 23 C -0.133 4.133 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.373 -28.563 -2.196 32.511 hybrid contribution -0.299 0.849 -0.636 1.102 sum -15.672 -27.714 -2.833 31.964 Atomic orbital electron populations 1.21972 0.79378 1.03580 1.02114 1.47752 1.06963 1.05780 1.74085 1.21532 0.98543 0.84467 0.96166 1.23063 0.94424 0.84181 0.96275 0.89019 1.23600 0.97294 0.98373 0.99261 1.23147 0.91872 0.99385 0.87529 1.50192 1.53197 1.11036 1.24105 1.20051 0.76321 0.86683 0.82814 1.90719 1.42813 1.78871 1.26354 1.23207 1.05161 0.93488 1.04683 1.84813 1.54859 1.08065 1.43844 1.22300 1.31516 0.92400 1.20577 0.89411 1.24711 0.95847 0.94010 0.96748 1.69938 1.40038 1.00823 1.40891 0.86737 0.82131 0.79623 0.83390 1.19199 1.19918 1.15893 1.20697 0.88068 0.85285 0.75539 1.90723 1.14078 1.86929 1.48687 1.21960 0.99188 0.92824 0.99353 1.22168 1.01035 0.94450 0.98081 1.22364 0.97807 0.99205 0.96732 1.22512 0.97965 0.95018 1.00602 1.22339 1.01063 0.97175 0.94325 0.92434 0.90598 0.90670 0.89776 0.88730 0.89946 0.88982 0.89699 0.89594 0.88887 0.88494 0.91945 0.88796 0.89368 0.91504 0.91378 0.91507 0.91257 0.91254 0.90821 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 9.69 59.85 0.58 0.95 16 2 N -0.61 -5.66 2.79 -181.56 -0.51 -6.17 16 3 C 0.12 1.42 4.86 -4.04 -0.02 1.40 16 4 C 0.13 1.47 4.46 -66.86 -0.30 1.17 16 5 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.15 -1.11 7.30 -25.79 -0.19 -1.30 16 7 C 0.10 0.98 8.63 -2.85 -0.02 0.96 16 8 N -0.65 -9.14 3.50 -170.15 -0.60 -9.73 16 9 C 0.55 10.52 7.94 -10.98 -0.09 10.44 16 10 O -0.51 -11.76 16.11 5.56 0.09 -11.67 16 11 C -0.11 -2.33 5.92 36.01 0.21 -2.11 16 12 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 13 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 14 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 15 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 17 Si 0.86 22.14 27.74 -169.99 -4.72 17.42 16 18 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.23 -6.09 6.74 56.52 0.38 -5.70 16 21 C 0.52 5.58 6.73 -10.99 -0.07 5.50 16 22 O -0.53 -8.15 14.97 5.56 0.08 -8.06 16 23 C -0.11 -0.80 2.38 -90.66 -0.22 -1.02 16 24 C -0.12 -0.94 6.37 -25.62 -0.16 -1.10 16 25 C -0.12 -0.80 6.84 -25.04 -0.17 -0.98 16 26 C -0.12 -0.62 6.91 -24.70 -0.17 -0.79 16 27 C -0.11 -0.61 5.67 -25.07 -0.14 -0.75 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.32 6.63 -51.93 -0.34 -0.03 16 30 H 0.07 0.25 5.02 -51.93 -0.26 -0.01 16 31 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 32 H 0.09 1.54 7.50 -51.93 -0.39 1.15 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.60 6.97 -51.93 -0.36 0.24 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.09 0.51 7.44 -51.93 -0.39 0.12 16 41 H 0.09 0.94 6.50 -51.93 -0.34 0.61 16 42 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.26 6.90 -51.93 -0.36 -0.10 16 48 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -36.92 394.69 -9.38 -46.30 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.91 Total: -2.56 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.55 Total: 0.21 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.33 Total: -41.88 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.42 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.92 -9.38 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344137547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.812 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds