Wall clock time and date at job start Tue Mar 31 2020 22:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99621 * 2 1 4 4 C 1.52994 * 109.46933 * 275.39943 * 3 2 1 5 5 H 1.08999 * 113.04723 * 66.76995 * 4 3 2 6 6 C 1.53946 * 113.77162 * 295.01219 * 4 3 2 7 7 C 1.53942 * 86.41020 * 222.15057 * 6 4 3 8 8 N 1.47578 * 86.11829 * 23.55350 * 7 6 4 9 9 C 1.34781 * 134.49332 * 155.35537 * 8 7 6 10 10 O 1.21284 * 119.99777 * 175.07144 * 9 8 7 11 11 C 1.50691 * 119.99774 * 355.08044 * 9 8 7 12 12 S 1.81004 * 109.47081 * 179.97438 * 11 9 8 13 13 C 1.76195 * 100.00124 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.38806 * 119.99807 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00197 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99809 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47063 * 89.99287 * 17 15 13 19 19 H 1.48503 * 109.46965 * 209.99753 * 17 15 13 20 20 H 1.48500 * 109.46963 * 329.99421 * 17 15 13 21 21 C 1.34768 * 120.00277 * 180.02562 * 2 1 3 22 22 O 1.21288 * 120.00232 * 179.97438 * 21 2 1 23 23 C 1.50703 * 120.00164 * 359.97438 * 21 2 1 24 24 C 1.53001 * 109.47230 * 180.02562 * 23 21 2 25 25 C 1.52996 * 109.46921 * 180.02562 * 24 23 21 26 26 C 1.53002 * 117.49968 * 243.74460 * 25 24 23 27 27 C 1.53002 * 117.49807 * 175.08582 * 25 24 23 28 28 H 1.08997 * 109.47320 * 85.55834 * 1 2 3 29 29 H 1.09005 * 109.47129 * 205.55468 * 1 2 3 30 30 H 1.08999 * 109.47416 * 325.54931 * 1 2 3 31 31 H 1.09000 * 109.47037 * 155.39643 * 3 2 1 32 32 H 1.09001 * 109.46738 * 35.40277 * 3 2 1 33 33 H 1.08999 * 113.73795 * 107.74881 * 6 4 3 34 34 H 1.09001 * 113.74215 * 336.55025 * 6 4 3 35 35 H 1.08999 * 113.76665 * 137.85674 * 7 6 4 36 36 H 1.08995 * 113.76770 * 269.25357 * 7 6 4 37 37 H 1.09002 * 109.47572 * 299.99344 * 11 9 8 38 38 H 1.09001 * 109.47945 * 59.99818 * 11 9 8 39 39 H 0.96997 * 120.00100 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.47026 * 299.99949 * 23 21 2 41 41 H 1.09000 * 109.46876 * 59.99587 * 23 21 2 42 42 H 1.09005 * 109.46939 * 299.99836 * 24 23 21 43 43 H 1.08991 * 109.47143 * 60.00102 * 24 23 21 44 44 H 1.09005 * 115.55282 * 29.41635 * 25 24 23 45 45 H 1.09006 * 117.49846 * 0.02562 * 26 25 24 46 46 H 1.09000 * 117.50153 * 145.01822 * 26 25 24 47 47 H 1.09004 * 117.49921 * 214.97724 * 27 25 24 48 48 H 1.09001 * 117.50015 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3348 1.7783 -1.4361 5 1 1.3812 2.0624 -1.8811 6 6 3.1944 0.8725 -2.3363 7 6 3.8139 2.1702 -2.8858 8 7 3.3989 2.7891 -1.6120 9 6 3.8217 3.8493 -0.8951 10 8 3.2192 4.1860 0.1023 11 6 5.0427 4.6163 -1.3328 12 16 5.3509 5.9723 -0.1742 13 6 6.7894 6.6792 -0.9061 14 1 7.2034 6.2502 -1.8066 15 6 7.3910 7.7867 -0.3246 16 7 6.8867 8.3092 0.7731 17 14 8.9165 8.5357 -1.1002 18 1 8.5137 9.5779 -2.0782 19 1 9.7595 9.1487 -0.0424 20 1 9.6891 7.4757 -1.7965 21 6 2.1389 -1.1671 -0.0005 22 8 3.3518 -1.1671 -0.0010 23 6 1.3855 -2.4723 -0.0005 24 6 2.3798 -3.6351 -0.0005 25 6 1.6148 -4.9601 -0.0012 26 6 1.7811 -5.8725 1.2158 27 6 2.4327 -6.2480 -0.1175 28 1 -0.3634 0.0796 -1.0245 29 1 -0.3634 -0.9272 0.4433 30 1 -0.3634 0.8474 0.5813 31 1 3.1883 1.1164 0.4279 32 1 1.6536 2.0022 0.5954 33 1 2.6187 0.3141 -3.0745 34 1 3.8989 0.2485 -1.7863 35 1 4.8946 2.1194 -3.0181 36 1 3.2957 2.5695 -3.7576 37 1 5.9045 3.9490 -1.3492 38 1 4.8785 5.0221 -2.3311 39 1 7.3070 9.0833 1.1792 40 1 0.7591 -2.5303 0.8897 41 1 0.7584 -2.5298 -0.8903 42 1 3.0064 -3.5774 -0.8906 43 1 3.0064 -3.5774 0.8894 44 1 0.6380 -4.9389 -0.4845 45 1 2.4352 -5.5285 2.0170 46 1 0.9139 -6.4517 1.5329 47 1 1.9938 -7.0741 -0.6771 48 1 3.5157 -6.1512 -0.1940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344149120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:35 Heat of formation + Delta-G solvation = -15.063154 kcal Electronic energy + Delta-G solvation = -26775.931785 eV Core-core repulsion = 22959.236115 eV Total energy + Delta-G solvation = -3816.695670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67589 -39.62454 -37.91329 -37.29382 -35.71097 -32.73414 -32.40978 -30.72891 -29.21130 -28.01597 -26.94883 -25.50482 -25.30910 -23.23635 -22.74476 -21.76444 -20.80062 -19.36068 -18.83737 -17.70368 -17.23608 -16.65145 -16.51162 -16.38541 -15.82683 -15.41152 -15.11031 -14.78482 -14.63042 -14.33495 -13.99904 -13.85317 -13.62281 -13.26808 -13.13269 -12.92743 -12.79819 -12.48354 -12.38398 -12.30882 -11.97691 -11.90300 -11.77286 -11.70345 -11.56145 -11.49166 -11.04584 -11.00522 -10.82116 -10.73770 -10.68628 -10.27090 -9.97055 -9.79586 -9.28046 -9.04942 -9.02304 -8.46953 -8.21223 -6.47711 -6.19603 -3.89912 2.38253 2.50360 2.97364 3.11609 3.23960 3.27418 3.31948 3.40011 3.61000 4.10808 4.22491 4.32861 4.36919 4.52118 4.54346 4.68571 4.73846 4.81043 4.83922 4.88512 4.97025 5.05326 5.06689 5.14870 5.15711 5.23108 5.26102 5.31387 5.37733 5.44607 5.49481 5.52207 5.57425 5.60425 5.65844 5.70955 5.75803 5.83336 5.92674 5.99180 6.04975 6.17549 6.19072 6.33806 7.11013 7.61795 7.89120 7.95620 8.37494 8.59108 9.25652 10.87885 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.001915 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.140077 B =14618.886835 C =14985.508251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.113 3.887 4 C 0.123 3.877 5 H 0.088 0.912 6 C -0.148 4.148 7 C 0.103 3.897 8 N -0.644 5.644 9 C 0.556 3.444 10 O -0.517 6.517 11 C -0.145 4.145 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.511 3.489 22 O -0.532 6.532 23 C -0.135 4.135 24 C -0.075 4.075 25 C -0.155 4.155 26 C -0.182 4.182 27 C -0.181 4.181 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.268 0.732 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.837 -27.077 -6.081 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.348 5.348 3 C -0.010 4.010 4 C 0.018 3.982 5 H 0.106 0.894 6 C -0.186 4.186 7 C -0.020 4.020 8 N -0.384 5.384 9 C 0.345 3.655 10 O -0.391 6.391 11 C -0.295 4.295 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.197 1.197 21 C 0.300 3.700 22 O -0.408 6.408 23 C -0.175 4.175 24 C -0.113 4.113 25 C -0.173 4.173 26 C -0.219 4.219 27 C -0.218 4.218 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.984 -26.230 -4.317 31.018 hybrid contribution 1.430 0.283 -1.760 2.285 sum -14.554 -25.947 -6.077 30.365 Atomic orbital electron populations 1.21872 0.79307 1.03499 1.02125 1.47799 1.07061 1.05966 1.73938 1.21583 0.99363 0.84116 0.95916 1.23086 0.92701 0.86109 0.96299 0.89421 1.23659 0.99631 0.96377 0.98887 1.23089 1.01375 0.90212 0.87312 1.50182 1.35299 1.29070 1.23800 1.20067 0.85155 0.77506 0.82730 1.90690 1.57170 1.65353 1.25921 1.23470 0.97212 1.02987 1.05871 1.85356 1.36570 1.28462 1.33000 1.22866 1.13683 1.17367 1.14373 0.90947 1.24990 0.97863 0.95865 0.94856 1.70015 1.39713 1.22246 1.18334 0.86165 0.81382 0.79155 0.78788 1.20276 1.20734 1.19687 1.20776 0.88191 0.85335 0.75728 1.90719 1.13931 1.87232 1.48961 1.21686 0.99520 0.92018 1.04236 1.20937 0.96525 0.90062 1.03730 1.22351 1.00683 0.91450 1.02784 1.23073 1.03245 1.03769 0.91845 1.22977 0.99743 0.98443 1.00624 0.92377 0.90687 0.90791 0.88762 0.89434 0.90612 0.87730 0.89857 0.89958 0.89304 0.89465 0.92201 0.88844 0.88872 0.90702 0.90960 0.87790 0.88693 0.88962 0.88885 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.36 59.85 0.62 1.03 16 2 N -0.61 -5.71 2.79 -181.57 -0.51 -6.22 16 3 C 0.11 1.43 5.05 -4.04 -0.02 1.41 16 4 C 0.12 1.47 4.53 -66.73 -0.30 1.17 16 5 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.15 -1.53 7.23 -25.81 -0.19 -1.72 16 7 C 0.10 1.16 8.62 -2.97 -0.03 1.13 16 8 N -0.64 -9.84 3.50 -171.01 -0.60 -10.44 16 9 C 0.56 11.20 7.95 -10.99 -0.09 11.12 16 10 O -0.52 -12.15 16.16 5.55 0.09 -12.06 16 11 C -0.14 -3.13 5.91 36.00 0.21 -2.92 16 12 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.60 9.50 30.94 0.29 -15.30 16 14 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 15 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 16 N -0.87 -26.56 13.22 55.49 0.73 -25.82 16 17 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.51 5.17 7.24 -10.99 -0.08 5.09 16 22 O -0.53 -7.51 13.89 5.55 0.08 -7.44 16 23 C -0.13 -0.85 4.15 -27.88 -0.12 -0.96 16 24 C -0.07 -0.55 4.78 -26.73 -0.13 -0.67 16 25 C -0.15 -0.90 5.73 -90.62 -0.52 -1.42 16 26 C -0.18 -1.06 10.18 -26.69 -0.27 -1.33 16 27 C -0.18 -1.06 10.25 -26.69 -0.27 -1.34 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.25 6.28 -51.93 -0.33 -0.07 16 30 H 0.07 0.40 8.00 -51.93 -0.42 -0.01 16 31 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 32 H 0.09 1.18 8.00 -51.93 -0.42 0.76 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.31 6.54 -51.93 -0.34 0.97 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 38 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.09 0.46 7.42 -51.93 -0.39 0.07 16 41 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 42 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 44 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 45 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 409.17 15.07 6.17 6.17 Total: -1.00 -36.66 409.17 -10.37 -47.03 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.12 Total: -1.40 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.98 Total: -2.67 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.37 Total: -42.48 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.66 -10.37 -47.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344149120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.963 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds