Wall clock time and date at job start Tue Mar 31 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99621 * 2 1 4 4 C 1.52994 * 109.46933 * 275.39943 * 3 2 1 5 5 H 1.08999 * 113.04723 * 66.76995 * 4 3 2 6 6 C 1.53946 * 113.77162 * 295.01219 * 4 3 2 7 7 C 1.53942 * 86.41020 * 222.15057 * 6 4 3 8 8 N 1.47578 * 86.11829 * 23.55350 * 7 6 4 9 9 C 1.34781 * 134.49332 * 155.35537 * 8 7 6 10 10 O 1.21284 * 119.99777 * 175.07144 * 9 8 7 11 11 C 1.50691 * 119.99774 * 355.08044 * 9 8 7 12 12 S 1.81004 * 109.47081 * 179.97438 * 11 9 8 13 13 C 1.76195 * 100.00124 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.38806 * 119.99807 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00197 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99809 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47063 * 89.99287 * 17 15 13 19 19 H 1.48503 * 109.46965 * 209.99753 * 17 15 13 20 20 H 1.48500 * 109.46963 * 329.99421 * 17 15 13 21 21 C 1.34768 * 120.00277 * 180.02562 * 2 1 3 22 22 O 1.21288 * 120.00232 * 179.97438 * 21 2 1 23 23 C 1.50703 * 120.00164 * 359.97438 * 21 2 1 24 24 C 1.53001 * 109.47230 * 180.02562 * 23 21 2 25 25 C 1.52996 * 109.46921 * 180.02562 * 24 23 21 26 26 C 1.53002 * 117.49968 * 243.74460 * 25 24 23 27 27 C 1.53002 * 117.49807 * 175.08582 * 25 24 23 28 28 H 1.08997 * 109.47320 * 85.55834 * 1 2 3 29 29 H 1.09005 * 109.47129 * 205.55468 * 1 2 3 30 30 H 1.08999 * 109.47416 * 325.54931 * 1 2 3 31 31 H 1.09000 * 109.47037 * 155.39643 * 3 2 1 32 32 H 1.09001 * 109.46738 * 35.40277 * 3 2 1 33 33 H 1.08999 * 113.73795 * 107.74881 * 6 4 3 34 34 H 1.09001 * 113.74215 * 336.55025 * 6 4 3 35 35 H 1.08999 * 113.76665 * 137.85674 * 7 6 4 36 36 H 1.08995 * 113.76770 * 269.25357 * 7 6 4 37 37 H 1.09002 * 109.47572 * 299.99344 * 11 9 8 38 38 H 1.09001 * 109.47945 * 59.99818 * 11 9 8 39 39 H 0.96997 * 120.00100 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.47026 * 299.99949 * 23 21 2 41 41 H 1.09000 * 109.46876 * 59.99587 * 23 21 2 42 42 H 1.09005 * 109.46939 * 299.99836 * 24 23 21 43 43 H 1.08991 * 109.47143 * 60.00102 * 24 23 21 44 44 H 1.09005 * 115.55282 * 29.41635 * 25 24 23 45 45 H 1.09006 * 117.49846 * 0.02562 * 26 25 24 46 46 H 1.09000 * 117.50153 * 145.01822 * 26 25 24 47 47 H 1.09004 * 117.49921 * 214.97724 * 27 25 24 48 48 H 1.09001 * 117.50015 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3348 1.7783 -1.4361 5 1 1.3812 2.0624 -1.8811 6 6 3.1944 0.8725 -2.3363 7 6 3.8139 2.1702 -2.8858 8 7 3.3989 2.7891 -1.6120 9 6 3.8217 3.8493 -0.8951 10 8 3.2192 4.1860 0.1023 11 6 5.0427 4.6163 -1.3328 12 16 5.3509 5.9723 -0.1742 13 6 6.7894 6.6792 -0.9061 14 1 7.2034 6.2502 -1.8066 15 6 7.3910 7.7867 -0.3246 16 7 6.8867 8.3092 0.7731 17 14 8.9165 8.5357 -1.1002 18 1 8.5137 9.5779 -2.0782 19 1 9.7595 9.1487 -0.0424 20 1 9.6891 7.4757 -1.7965 21 6 2.1389 -1.1671 -0.0005 22 8 3.3518 -1.1671 -0.0010 23 6 1.3855 -2.4723 -0.0005 24 6 2.3798 -3.6351 -0.0005 25 6 1.6148 -4.9601 -0.0012 26 6 1.7811 -5.8725 1.2158 27 6 2.4327 -6.2480 -0.1175 28 1 -0.3634 0.0796 -1.0245 29 1 -0.3634 -0.9272 0.4433 30 1 -0.3634 0.8474 0.5813 31 1 3.1883 1.1164 0.4279 32 1 1.6536 2.0022 0.5954 33 1 2.6187 0.3141 -3.0745 34 1 3.8989 0.2485 -1.7863 35 1 4.8946 2.1194 -3.0181 36 1 3.2957 2.5695 -3.7576 37 1 5.9045 3.9490 -1.3492 38 1 4.8785 5.0221 -2.3311 39 1 7.3070 9.0833 1.1792 40 1 0.7591 -2.5303 0.8897 41 1 0.7584 -2.5298 -0.8903 42 1 3.0064 -3.5774 -0.8906 43 1 3.0064 -3.5774 0.8894 44 1 0.6380 -4.9389 -0.4845 45 1 2.4352 -5.5285 2.0170 46 1 0.9139 -6.4517 1.5329 47 1 1.9938 -7.0741 -0.6771 48 1 3.5157 -6.1512 -0.1940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344149120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:34 Heat of formation + Delta-G solvation = -38.238493 kcal Electronic energy + Delta-G solvation = -26776.936743 eV Core-core repulsion = 22959.236115 eV Total energy + Delta-G solvation = -3817.700628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68164 -40.64002 -38.79963 -38.31743 -36.53913 -34.62180 -33.36870 -32.14865 -30.14194 -29.43166 -27.69189 -27.52728 -26.06968 -24.07205 -23.19072 -22.95375 -21.28679 -20.29449 -20.07576 -19.49965 -18.18910 -17.85718 -17.36344 -17.30850 -16.91755 -16.74729 -16.38412 -16.22247 -15.74399 -15.65013 -15.19511 -14.74313 -14.57460 -14.40012 -14.20217 -13.86452 -13.77621 -13.69416 -13.33379 -13.32622 -13.17497 -12.97910 -12.90813 -12.68885 -12.63341 -12.45872 -12.40455 -12.19933 -12.08834 -11.78201 -11.76543 -11.17226 -11.16829 -10.89689 -10.77081 -10.68577 -10.33855 -9.96862 -9.55110 -8.71609 -8.37773 -6.16881 1.15739 1.38644 1.40444 1.52026 1.53076 1.65629 1.76517 2.20884 2.24891 2.94306 2.96108 3.17729 3.38740 3.54342 3.63355 3.80396 3.85435 3.99737 4.02743 4.07226 4.11392 4.21150 4.27683 4.35747 4.38411 4.40249 4.43064 4.51194 4.56577 4.62392 4.67601 4.73431 4.81102 4.83511 4.87343 4.96850 5.01003 5.08074 5.09477 5.17944 5.29097 5.30206 5.38006 5.45467 5.49930 6.16448 6.40041 6.57147 7.02942 7.08037 7.20212 8.71674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.001915 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.140077 B =14618.886835 C =14985.508251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.609 5.609 3 C 0.120 3.880 4 C 0.122 3.878 5 H 0.117 0.883 6 C -0.129 4.129 7 C 0.101 3.899 8 N -0.646 5.646 9 C 0.551 3.449 10 O -0.564 6.564 11 C -0.120 4.120 12 S -0.147 6.147 13 C -0.549 4.549 14 H 0.081 0.919 15 C 0.014 3.986 16 N -0.910 5.910 17 Si 1.001 2.999 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.260 1.260 21 C 0.504 3.496 22 O -0.582 6.582 23 C -0.123 4.123 24 C -0.073 4.073 25 C -0.148 4.148 26 C -0.186 4.186 27 C -0.189 4.189 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.272 0.728 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.126 0.874 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 -28.886 -8.954 34.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.004 4.004 4 C 0.019 3.981 5 H 0.135 0.865 6 C -0.167 4.167 7 C -0.020 4.020 8 N -0.383 5.383 9 C 0.341 3.659 10 O -0.443 6.443 11 C -0.271 4.271 12 S 0.080 5.920 13 C -0.697 4.697 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.547 5.547 17 Si 0.822 3.178 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.184 1.184 21 C 0.295 3.705 22 O -0.462 6.462 23 C -0.162 4.162 24 C -0.111 4.111 25 C -0.166 4.166 26 C -0.223 4.223 27 C -0.226 4.226 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.144 0.856 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.540 -28.097 -7.235 33.903 hybrid contribution 1.825 0.700 -0.881 2.144 sum -15.715 -27.396 -8.115 32.610 Atomic orbital electron populations 1.22186 0.76408 1.04919 1.03875 1.47876 1.08650 1.04408 1.73317 1.21240 0.97457 0.85559 0.96166 1.23425 0.93366 0.85076 0.96255 0.86538 1.23480 0.98876 0.95701 0.98664 1.23493 1.02300 0.89760 0.86452 1.50296 1.35933 1.27355 1.24754 1.19764 0.84735 0.78620 0.82816 1.90661 1.58416 1.67213 1.28020 1.23269 0.98683 1.00708 1.04430 1.85508 1.37413 1.32162 1.36892 1.23191 1.13821 1.17927 1.14727 0.90113 1.26154 1.01539 0.96161 0.95240 1.70177 1.41590 1.22882 1.20013 0.84929 0.76531 0.78409 0.77946 1.19014 1.20099 1.18364 1.21548 0.87850 0.86544 0.74582 1.90706 1.16328 1.87916 1.51243 1.21712 0.99043 0.88748 1.06713 1.20857 0.96678 0.91700 1.01839 1.22357 1.01209 0.90260 1.02815 1.23121 1.03563 1.03986 0.91599 1.23044 0.99370 0.99124 1.01017 0.90085 0.87969 0.91099 0.93054 0.90941 0.86823 0.90190 0.89588 0.86602 0.88424 0.87664 0.91889 0.86735 0.85569 0.92196 0.93480 0.85580 0.89731 0.87612 0.87632 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.36 127.77 1.32 1.85 16 2 N -0.61 -10.59 2.79 -846.75 -2.36 -12.95 16 3 C 0.12 3.11 5.05 86.38 0.44 3.55 16 4 C 0.12 2.75 4.53 45.05 0.20 2.96 16 5 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.13 -2.38 7.23 31.25 0.23 -2.15 16 7 C 0.10 2.00 8.62 86.49 0.75 2.74 16 8 N -0.65 -19.26 3.50 -813.35 -2.84 -22.11 16 9 C 0.55 22.75 7.95 87.65 0.70 23.45 16 10 O -0.56 -27.86 16.16 -3.04 -0.05 -27.91 16 11 C -0.12 -5.25 5.91 71.23 0.42 -4.83 16 12 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 13 C -0.55 -32.54 9.50 67.96 0.65 -31.90 16 14 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 15 C 0.01 0.81 5.49 84.86 0.47 1.28 16 16 N -0.91 -57.12 13.22 21.65 0.29 -56.84 16 17 Si 1.00 44.69 29.55 68.60 2.03 46.72 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 21 C 0.50 9.76 7.24 87.66 0.63 10.40 16 22 O -0.58 -17.08 13.89 -3.05 -0.04 -17.12 16 23 C -0.12 -1.22 4.15 29.85 0.12 -1.10 16 24 C -0.07 -1.00 4.78 30.59 0.15 -0.85 16 25 C -0.15 -1.42 5.73 -10.79 -0.06 -1.48 16 26 C -0.19 -1.91 10.18 30.62 0.31 -1.59 16 27 C -0.19 -2.00 10.25 30.62 0.31 -1.69 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.10 0.26 6.28 -2.38 -0.01 0.24 16 30 H 0.07 0.63 8.00 -2.39 -0.02 0.61 16 31 H 0.05 1.77 7.27 -2.39 -0.02 1.75 16 32 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.97 6.54 -2.39 -0.02 1.95 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 38 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.11 0.71 7.42 -2.38 -0.02 0.69 16 41 H 0.13 0.48 8.11 -2.39 -0.02 0.47 16 42 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 43 H 0.05 0.87 7.83 -2.39 -0.02 0.85 16 44 H 0.13 0.68 8.08 -2.38 -0.02 0.66 16 45 H 0.08 1.03 8.03 -2.38 -0.02 1.01 16 46 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -86.37 409.17 3.42 -82.95 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.93 Total: 16.37 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.63 Total: 0.62 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.92 Total: -91.90 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.09 Total: -45.03 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -86.37 3.42 -82.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344149120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.710 kcal (2) G-P(sol) polarization free energy of solvation -86.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds