Wall clock time and date at job start Tue Mar 31 2020 23:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 102.99877 * 2 1 4 4 C 1.53038 * 109.46272 * 295.02737 * 3 2 1 5 5 C 1.53193 * 109.31301 * 178.59763 * 4 3 2 6 6 N 1.46930 * 108.76485 * 54.65960 * 5 4 3 7 7 C 1.34774 * 120.63226 * 126.36273 * 6 5 4 8 8 O 1.21341 * 119.99891 * 174.97403 * 7 6 5 9 9 C 1.49451 * 119.99899 * 354.96495 * 7 6 5 10 10 O 1.21347 * 120.00450 * 274.75623 * 9 7 6 11 11 N 1.34783 * 119.99788 * 94.75396 * 9 7 6 12 12 C 1.46934 * 120.62799 * 5.05256 * 11 9 7 13 13 C 1.53188 * 108.76828 * 233.58140 * 12 11 9 14 14 C 1.53035 * 109.31744 * 305.36058 * 13 12 11 15 15 C 1.53043 * 109.53414 * 61.36716 * 14 13 12 16 16 H 1.09000 * 109.49526 * 58.59417 * 15 14 13 17 17 C 1.50704 * 109.49677 * 178.68331 * 15 14 13 18 18 H 1.08001 * 120.00184 * 0.02562 * 17 15 14 19 19 C 1.37881 * 120.00101 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99590 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99891 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46776 * 60.00402 * 21 19 17 23 23 H 1.48498 * 109.46784 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46933 * 300.00301 * 21 19 17 25 25 C 1.46921 * 120.63161 * 184.76034 * 11 9 7 26 26 C 1.46929 * 118.73353 * 306.38128 * 6 5 4 27 27 C 1.53035 * 109.46319 * 174.97055 * 3 2 1 28 28 H 1.08995 * 109.47254 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47051 * 60.00135 * 1 2 3 31 31 H 1.09004 * 109.45984 * 55.00201 * 3 2 1 32 32 H 1.09000 * 109.49728 * 298.56681 * 4 3 2 33 33 H 1.09004 * 109.49896 * 58.66452 * 4 3 2 34 34 H 1.09003 * 109.60045 * 294.86511 * 5 4 3 35 35 H 1.09002 * 109.70227 * 174.50543 * 5 4 3 36 36 H 1.08999 * 109.58130 * 353.36585 * 12 11 9 37 37 H 1.08995 * 109.58752 * 113.64921 * 12 11 9 38 38 H 1.08998 * 109.50342 * 65.32029 * 13 12 11 39 39 H 1.09005 * 109.49440 * 185.41523 * 13 12 11 40 40 H 1.08991 * 109.46739 * 181.39077 * 14 13 12 41 41 H 1.09000 * 109.46048 * 301.35011 * 14 13 12 42 42 H 0.96999 * 119.99575 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.59344 * 246.20786 * 25 11 9 44 44 H 1.09005 * 109.58692 * 6.63751 * 25 11 9 45 45 H 1.09003 * 109.58442 * 293.81818 * 26 6 5 46 46 H 1.09003 * 109.58342 * 173.39846 * 26 6 5 47 47 H 1.09007 * 109.50248 * 301.33975 * 27 3 2 48 48 H 1.09001 * 109.49735 * 61.40517 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7419 2.4016 -1.3074 5 6 2.0568 3.9008 -1.2890 6 7 3.4907 4.0793 -1.0230 7 6 4.2554 4.8199 -1.8495 8 8 5.4166 5.0356 -1.5711 9 6 3.6733 5.3754 -3.1089 10 8 3.6446 4.6972 -4.1148 11 7 3.1801 6.6296 -3.1274 12 6 3.3068 7.5012 -1.9514 13 6 1.9178 8.0267 -1.5754 14 6 1.2856 8.7032 -2.7939 15 6 1.1263 7.6809 -3.9216 16 1 0.5053 6.8537 -3.5777 17 6 0.4742 8.3400 -5.1096 18 1 0.2009 9.3839 -5.0655 19 6 0.2274 7.6106 -6.2534 20 7 0.5607 6.3395 -6.3073 21 14 -0.5802 8.4278 -7.7263 22 1 0.2678 9.5533 -8.1945 23 1 -0.7346 7.4353 -8.8200 24 1 -1.9163 8.9443 -7.3348 25 6 2.5113 7.1533 -4.3262 26 6 4.0751 3.4348 0.1610 27 6 3.7372 1.9410 0.1265 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.7293 2.2539 0.8419 32 1 2.2528 1.9327 -2.1484 33 1 0.6662 2.2573 -1.4083 34 1 1.4762 4.3867 -0.5047 35 1 1.8067 4.3407 -2.2544 36 1 3.7203 6.9329 -1.1183 37 1 3.9652 8.3376 -2.1856 38 1 1.2894 7.1963 -1.2535 39 1 2.0095 8.7497 -0.7648 40 1 0.3074 9.0998 -2.5224 41 1 1.9269 9.5179 -3.1303 42 1 0.3868 5.8263 -7.1118 43 1 3.1041 7.9634 -4.7510 44 1 2.3997 6.3554 -5.0604 45 1 3.6592 3.8828 1.0636 46 1 5.1572 3.5651 0.1512 47 1 4.0821 1.4687 1.0464 48 1 4.2292 1.4760 -0.7278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351931024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:57 Heat of formation + Delta-G solvation = -94.593164 kcal Electronic energy + Delta-G solvation = -29117.681730 eV Core-core repulsion = 25297.537380 eV Total energy + Delta-G solvation = -3820.144350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.15236 -40.25486 -38.69905 -38.39235 -35.33143 -34.22492 -33.53682 -32.46391 -31.63164 -29.70077 -28.19721 -26.97135 -26.33046 -24.69933 -23.84823 -23.47180 -21.88483 -20.85279 -19.89788 -18.98949 -18.37738 -18.02756 -17.57082 -17.26041 -16.58495 -16.12415 -15.98559 -15.94202 -15.44560 -15.27349 -15.22317 -15.15866 -14.90660 -14.61610 -14.42176 -14.37264 -14.14574 -13.90605 -13.70605 -13.65185 -13.44541 -12.86530 -12.77305 -12.67236 -12.58588 -12.37088 -12.30737 -12.27601 -12.02958 -11.84639 -11.75489 -11.66800 -11.12739 -10.96577 -10.90398 -10.58630 -10.49529 -9.95805 -9.64018 -8.70131 -8.11487 -6.26686 0.67843 0.96602 1.02917 1.43054 1.44322 1.49818 1.51912 1.62818 2.25883 2.43518 3.06326 3.18917 3.48177 3.58414 3.82649 3.90971 3.94994 4.08325 4.15496 4.25261 4.28175 4.35535 4.36179 4.42224 4.52939 4.53853 4.63765 4.65386 4.67585 4.74182 4.77686 4.78514 4.91003 4.99206 5.07423 5.14944 5.19095 5.23584 5.25228 5.32249 5.42307 5.59525 5.84463 5.86841 5.94727 6.29015 6.32612 6.57537 6.79850 6.88568 7.43547 8.92025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.003434 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.131136 B = 8152.636154 C = 9290.395589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.306 6.306 3 C -0.037 4.037 4 C -0.124 4.124 5 C 0.109 3.891 6 N -0.585 5.585 7 C 0.528 3.472 8 O -0.544 6.544 9 C 0.499 3.501 10 O -0.563 6.563 11 N -0.586 5.586 12 C 0.102 3.898 13 C -0.120 4.120 14 C -0.106 4.106 15 C 0.044 3.956 16 H 0.001 0.999 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.015 3.985 20 N -0.913 5.913 21 Si 0.952 3.048 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.123 3.877 26 C 0.115 3.885 27 C -0.109 4.109 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.260 0.740 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -6.306 19.899 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.077 6.077 3 C -0.165 4.165 4 C -0.164 4.164 5 C -0.015 4.015 6 N -0.319 5.319 7 C 0.310 3.690 8 O -0.422 6.422 9 C 0.281 3.719 10 O -0.441 6.441 11 N -0.318 5.318 12 C -0.019 4.019 13 C -0.158 4.158 14 C -0.144 4.144 15 C 0.025 3.975 16 H 0.019 0.981 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.185 4.185 20 N -0.552 5.552 21 Si 0.778 3.222 22 H -0.196 1.196 23 H -0.217 1.217 24 H -0.192 1.192 25 C 0.001 3.999 26 C -0.007 4.007 27 C -0.148 4.148 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.132 0.868 46 H 0.111 0.889 47 H 0.129 0.871 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.313 -7.624 19.433 20.916 hybrid contribution -1.134 1.015 -1.851 2.397 sum 0.179 -6.608 17.582 18.783 Atomic orbital electron populations 1.23455 0.91435 1.07339 1.05884 1.87060 1.10569 1.12161 1.97948 1.23121 0.99985 0.92885 1.00546 1.22186 1.02716 0.94126 0.97403 1.21952 0.79482 0.97308 1.02778 1.48210 1.09933 1.48526 1.25210 1.20088 0.86347 0.79602 0.82929 1.90733 1.17255 1.60676 1.73523 1.20640 0.78689 0.83179 0.89342 1.90791 1.57288 1.60447 1.35619 1.48626 1.53901 1.12106 1.17183 1.22032 0.99352 0.94307 0.86243 1.21890 0.94275 1.01124 0.98466 1.21536 1.00268 0.97896 0.94696 1.18957 0.90629 0.94058 0.93854 0.98052 1.21485 1.39564 0.97064 0.99237 0.91891 1.25803 0.96000 0.95208 1.01462 1.70031 1.47814 1.08365 1.28994 0.85696 0.79400 0.78147 0.78958 1.19607 1.21690 1.19168 1.22066 0.93590 0.98445 0.85786 1.21971 1.00616 0.91516 0.86630 1.21733 0.92878 0.95877 1.04338 0.88795 0.87315 0.90286 0.86377 0.92707 0.88933 0.86768 0.92326 0.89546 0.90068 0.91670 0.87574 0.92067 0.92705 0.93107 0.94223 0.90158 0.86826 0.88945 0.87063 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.45 113.37 1.18 -0.25 16 2 S -0.31 -5.61 21.79 -56.49 -1.23 -6.84 16 3 C -0.04 -0.59 2.61 30.62 0.08 -0.51 16 4 C -0.12 -2.61 5.28 30.67 0.16 -2.45 16 5 C 0.11 2.56 6.36 86.36 0.55 3.11 16 6 N -0.59 -14.95 2.97 -820.47 -2.44 -17.39 16 7 C 0.53 18.38 5.48 87.27 0.48 18.86 16 8 O -0.54 -20.69 16.51 -3.22 -0.05 -20.74 16 9 C 0.50 21.22 5.47 87.27 0.48 21.70 16 10 O -0.56 -29.27 16.53 -3.24 -0.05 -29.33 16 11 N -0.59 -23.43 2.97 -819.64 -2.43 -25.86 16 12 C 0.10 3.02 6.35 86.36 0.55 3.57 16 13 C -0.12 -3.16 6.08 30.67 0.19 -2.97 16 14 C -0.11 -3.72 5.10 30.62 0.16 -3.57 16 15 C 0.04 2.06 2.26 -11.31 -0.03 2.04 16 16 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 17 C -0.54 -27.89 8.56 25.60 0.22 -27.67 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 19 C 0.02 0.81 5.30 84.66 0.45 1.26 16 20 N -0.91 -53.11 11.41 21.45 0.24 -52.87 16 21 Si 0.95 42.77 29.54 68.60 2.03 44.79 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 C 0.12 5.90 5.41 86.51 0.47 6.37 16 26 C 0.11 2.03 6.42 86.36 0.55 2.59 16 27 C -0.11 -1.80 5.37 30.67 0.16 -1.64 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.04 7.11 -2.39 -0.02 1.03 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.71 6.86 -2.39 -0.02 1.69 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.90 6.31 -2.39 -0.02 1.89 16 36 H 0.09 2.25 6.29 -2.39 -0.02 2.24 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 4.63 5.18 -2.38 -0.01 4.62 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.88 7.04 -2.39 -0.02 1.86 16 47 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.18 386.52 2.66 -69.52 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.94 Total: 18.26 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 5.65 Total: 20.44 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -4.62 Total: -96.12 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.11 Total: -50.07 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -5.61 SS G_CDS: -1.23 Total: -6.84 kcal Total: -72.18 2.66 -69.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351931024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.072 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds