Wall clock time and date at job start Tue Mar 31 2020 22:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 119.99938 * 2 1 4 4 C 1.53000 * 109.46707 * 269.99626 * 3 2 1 5 5 N 1.46497 * 109.47204 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00270 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99895 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47049 * 180.02562 * 8 6 5 10 10 H 1.09004 * 110.43355 * 52.45793 * 9 8 6 11 11 C 1.54883 * 110.60054 * 289.84727 * 9 8 6 12 12 C 1.54889 * 102.74798 * 203.32131 * 11 9 8 13 13 C 1.54265 * 104.19782 * 37.94223 * 12 11 9 14 14 H 1.08996 * 117.76091 * 196.03329 * 13 12 11 15 15 C 1.53006 * 118.19758 * 40.56436 * 13 12 11 16 16 C 1.53002 * 60.37882 * 266.38988 * 15 13 12 17 17 H 1.09000 * 119.29374 * 248.69807 * 16 15 13 18 18 C 1.34777 * 119.99827 * 179.97438 * 2 1 3 19 19 O 1.21281 * 119.99873 * 180.02562 * 18 2 1 20 20 C 1.50706 * 120.00201 * 0.02562 * 18 2 1 21 21 S 1.81001 * 109.47055 * 179.97438 * 20 18 2 22 22 C 1.76199 * 99.99919 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99645 * 0.02562 * 22 21 20 24 24 C 1.38799 * 119.99663 * 179.97438 * 22 21 20 25 25 N 1.31635 * 119.99589 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00289 * 359.97438 * 24 22 21 27 27 H 1.48493 * 109.46804 * 89.99982 * 26 24 22 28 28 H 1.48500 * 109.46847 * 210.00035 * 26 24 22 29 29 H 1.48498 * 109.46997 * 329.99775 * 26 24 22 30 30 H 1.09004 * 109.46839 * 90.00866 * 1 2 3 31 31 H 1.09007 * 109.47145 * 210.00235 * 1 2 3 32 32 H 1.08994 * 109.47148 * 330.00682 * 1 2 3 33 33 H 1.09003 * 109.47560 * 149.99691 * 3 2 1 34 34 H 1.08998 * 109.47550 * 29.99241 * 3 2 1 35 35 H 1.08997 * 109.47447 * 59.99711 * 4 3 2 36 36 H 1.09004 * 109.46949 * 299.99673 * 4 3 2 37 37 H 0.97005 * 120.00149 * 359.97438 * 5 4 3 38 38 H 1.09005 * 109.46723 * 60.00688 * 8 6 5 39 39 H 1.08998 * 109.47681 * 300.00237 * 8 6 5 40 40 H 1.09007 * 110.75955 * 321.63613 * 11 9 8 41 41 H 1.09000 * 110.76231 * 84.81891 * 11 9 8 42 42 H 1.08994 * 110.48860 * 279.26196 * 12 11 9 43 43 H 1.09002 * 110.48569 * 156.61858 * 12 11 9 44 44 H 1.09002 * 117.45878 * 13.98877 * 15 13 12 45 45 H 1.09001 * 117.45855 * 158.81184 * 15 13 12 46 46 H 1.08993 * 109.46689 * 299.99746 * 20 18 2 47 47 H 1.08994 * 109.46990 * 59.99767 * 20 18 2 48 48 H 0.96992 * 119.99821 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4425 5 7 3.1855 2.9786 -1.4427 6 6 3.5231 3.5618 -2.6099 7 8 3.2196 3.0368 -3.6602 8 6 4.2766 4.8669 -2.6100 9 6 4.5318 5.3085 -4.0525 10 1 3.6004 5.3150 -4.6189 11 6 5.5716 4.3819 -4.7302 12 6 6.1391 5.2749 -5.8614 13 6 6.2134 6.6813 -5.2319 14 1 6.3294 7.5324 -5.9030 15 6 6.6886 6.8005 -3.7824 16 6 5.1913 6.7026 -4.0818 17 1 4.5544 7.5695 -3.9057 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4724 0.0005 21 16 2.5616 -3.8481 0.0005 22 6 1.4415 -5.2083 -0.0003 23 1 0.3762 -5.0305 -0.0010 24 6 1.9283 -6.5081 -0.0010 25 7 1.0915 -7.5242 -0.0011 26 14 3.7709 -6.8155 -0.0019 27 1 4.2596 -6.8975 1.3979 28 1 4.0593 -8.0926 -0.7026 29 1 4.4583 -5.7007 -0.7018 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 3.1499 1.1385 0.5139 34 1 1.6084 2.0284 0.5137 35 1 1.5002 1.8405 -1.9564 36 1 3.0417 0.9505 -1.9563 37 1 3.4280 3.3988 -0.6026 38 1 5.2288 4.7366 -2.0957 39 1 3.6874 5.6268 -2.0967 40 1 6.3568 4.1032 -4.0273 41 1 5.0893 3.4945 -5.1399 42 1 5.4675 5.2761 -6.7198 43 1 7.1326 4.9348 -6.1537 44 1 7.1704 5.9295 -3.3382 45 1 7.0738 7.7671 -3.4576 46 1 0.7585 -2.5299 0.8903 47 1 0.7591 -2.5303 -0.8896 48 1 1.4317 -8.4326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355701805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:36 Heat of formation + Delta-G solvation = -54.722995 kcal Electronic energy + Delta-G solvation = -26311.616039 eV Core-core repulsion = 22493.200589 eV Total energy + Delta-G solvation = -3818.415449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62447 -39.77970 -39.16499 -36.08157 -34.65498 -32.79882 -32.44694 -31.06325 -30.41013 -28.50002 -26.74873 -25.72123 -25.48592 -23.87011 -23.00703 -20.92486 -20.07677 -19.46012 -19.19199 -17.72768 -17.50468 -16.87440 -16.62730 -16.46126 -15.87063 -15.50522 -15.36516 -14.95842 -14.74091 -14.40162 -13.96965 -13.81597 -13.67700 -13.35453 -13.29092 -13.09657 -12.85788 -12.80054 -12.50848 -12.38584 -12.17221 -11.97396 -11.72113 -11.51589 -11.28909 -11.26424 -11.23711 -11.01701 -11.01146 -10.61709 -10.41594 -10.14226 -9.88577 -9.84283 -9.56490 -9.29316 -9.01228 -8.77373 -8.50969 -6.93541 -6.29761 -4.01811 2.45177 2.50715 2.82833 2.94399 3.25802 3.32236 3.35780 3.50249 3.59322 4.03581 4.26208 4.32221 4.46128 4.52005 4.58227 4.66512 4.72473 4.77624 4.82994 4.88833 4.99592 5.03150 5.09297 5.14319 5.15510 5.22224 5.23588 5.33557 5.35444 5.39241 5.46842 5.59931 5.62366 5.69064 5.71032 5.74744 5.81061 5.82756 5.87578 5.97952 6.00730 6.09159 6.13400 6.45801 7.23106 7.30844 7.93241 8.01818 8.33873 8.40482 9.16401 10.79411 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.001848 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.540138 B =15145.996337 C =16111.975790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.621 5.621 3 C 0.109 3.891 4 C 0.103 3.897 5 N -0.730 5.730 6 C 0.511 3.489 7 O -0.535 6.535 8 C -0.131 4.131 9 C -0.045 4.045 10 H 0.089 0.911 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.166 4.166 14 H 0.108 0.892 15 C -0.154 4.154 16 C -0.166 4.166 17 H 0.109 0.891 18 C 0.532 3.468 19 O -0.514 6.514 20 C -0.121 4.121 21 S -0.143 6.143 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.880 5.880 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 31.860 -3.706 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.357 5.357 3 C -0.015 4.015 4 C -0.022 4.022 5 N -0.383 5.383 6 C 0.297 3.703 7 O -0.411 6.411 8 C -0.171 4.171 9 C -0.064 4.064 10 H 0.107 0.893 11 C -0.162 4.162 12 C -0.134 4.134 13 C -0.184 4.184 14 H 0.126 0.874 15 C -0.191 4.191 16 C -0.184 4.184 17 H 0.127 0.873 18 C 0.320 3.680 19 O -0.388 6.388 20 C -0.272 4.272 21 S 0.083 5.917 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.724 31.240 -4.478 32.075 hybrid contribution -0.838 -0.129 0.486 0.977 sum 4.887 31.111 -3.993 31.744 Atomic orbital electron populations 1.21863 0.78992 1.03476 1.02196 1.47705 1.07104 1.05135 1.75771 1.21472 0.98818 0.85622 0.95584 1.21743 0.97018 0.85498 0.97964 1.45897 1.59079 1.24461 1.08859 1.20754 0.79323 0.86699 0.83490 1.90717 1.54137 1.65057 1.31165 1.21674 1.01277 0.94624 0.99546 1.21313 0.99271 0.91875 0.93913 0.89288 1.22600 0.97648 0.98480 0.97478 1.21923 1.00994 0.92410 0.98055 1.23156 1.05214 0.99111 0.90931 0.87427 1.22902 0.95779 1.02935 0.97510 1.23172 0.91590 0.98411 1.05257 0.87298 1.20388 0.87957 0.84654 0.75003 1.90702 1.13688 1.86770 1.47619 1.23315 1.03124 0.94992 1.05727 1.84803 1.11922 0.97538 1.97422 1.22301 0.94848 0.90869 1.58854 0.89366 1.24710 0.98538 0.94873 0.93160 1.69937 1.34790 0.98880 1.48010 0.86737 0.85364 0.79863 0.79915 1.19211 1.19918 1.15923 0.92409 0.90245 0.91139 0.89215 0.90163 0.91370 0.90752 0.76638 0.88814 0.88823 0.91722 0.89933 0.90878 0.91512 0.88889 0.88456 0.88404 0.88357 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.29 59.85 0.62 1.33 16 2 N -0.62 -7.80 2.87 -181.57 -0.52 -8.33 16 3 C 0.11 1.09 5.56 -4.04 -0.02 1.07 16 4 C 0.10 1.13 6.00 -4.04 -0.02 1.11 16 5 N -0.73 -6.29 5.56 -60.30 -0.33 -6.63 16 6 C 0.51 5.21 7.65 -10.98 -0.08 5.13 16 7 O -0.53 -7.75 14.73 5.56 0.08 -7.66 16 8 C -0.13 -0.88 5.24 -27.88 -0.15 -1.03 16 9 C -0.04 -0.35 2.38 -88.97 -0.21 -0.56 16 10 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 11 C -0.12 -1.11 5.28 -24.74 -0.13 -1.24 16 12 C -0.10 -0.73 6.77 -25.07 -0.17 -0.90 16 13 C -0.17 -1.12 7.06 -89.50 -0.63 -1.75 16 14 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 15 C -0.15 -0.92 9.83 -26.73 -0.26 -1.18 16 16 C -0.17 -1.07 6.42 -89.50 -0.57 -1.65 16 17 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 18 C 0.53 9.36 7.69 -10.98 -0.08 9.27 16 19 O -0.51 -10.86 15.44 5.56 0.09 -10.78 16 20 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 21 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 22 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 23 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 24 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 25 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 26 Si 0.86 21.82 27.74 -169.99 -4.72 17.10 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.75 6.44 -51.92 -0.33 0.41 16 32 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 33 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 34 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.40 2.13 8.47 -40.82 -0.35 1.78 16 38 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.56 7.22 -51.93 -0.37 0.18 16 41 H 0.08 0.92 7.28 -51.93 -0.38 0.54 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.58 7.21 -51.93 -0.37 0.20 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 1.72 7.40 -51.92 -0.38 1.34 16 47 H 0.10 1.78 8.11 -51.92 -0.42 1.36 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -36.06 401.09 -9.95 -46.00 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.03 Total: 0.09 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.34 Total: -4.52 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.08 Total: -40.67 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.06 -9.95 -46.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355701805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.718 kcal (2) G-P(sol) polarization free energy of solvation -36.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds