Wall clock time and date at job start Tue Mar 31 2020 22:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99735 * 2 1 4 4 C 1.53003 * 109.46761 * 269.99217 * 3 2 1 5 5 N 1.46505 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99747 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99563 * 180.02562 * 6 5 4 9 9 H 1.09006 * 109.26765 * 60.50225 * 8 6 5 10 10 C 1.52613 * 110.08212 * 302.07850 * 8 6 5 11 11 C 1.53301 * 108.86697 * 185.23592 * 10 8 6 12 12 C 1.52875 * 108.72981 * 73.86395 * 11 10 8 13 13 C 1.52713 * 110.15610 * 305.38313 * 12 11 10 14 14 H 1.09003 * 115.38850 * 231.22360 * 13 12 11 15 15 C 1.53650 * 116.03195 * 90.20324 * 13 12 11 16 16 C 1.52074 * 120.51849 * 21.47137 * 13 12 11 17 17 H 1.09000 * 115.92844 * 210.74405 * 16 13 12 18 18 C 1.34774 * 120.00137 * 179.97438 * 2 1 3 19 19 O 1.21276 * 120.00133 * 180.02562 * 18 2 1 20 20 C 1.50701 * 120.00086 * 0.02562 * 18 2 1 21 21 S 1.80998 * 109.47494 * 179.97438 * 20 18 2 22 22 C 1.76201 * 100.00164 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00331 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99898 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99860 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47219 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46992 * 120.00178 * 26 24 22 29 29 H 1.48500 * 109.46749 * 240.00002 * 26 24 22 30 30 H 1.09003 * 109.46759 * 90.00518 * 1 2 3 31 31 H 1.09002 * 109.47260 * 209.99922 * 1 2 3 32 32 H 1.08996 * 109.47490 * 330.00209 * 1 2 3 33 33 H 1.09005 * 109.46716 * 150.00186 * 3 2 1 34 34 H 1.08989 * 109.47412 * 29.99542 * 3 2 1 35 35 H 1.09008 * 109.46974 * 60.00505 * 4 3 2 36 36 H 1.08998 * 109.47578 * 300.00587 * 4 3 2 37 37 H 0.96997 * 119.99837 * 0.02562 * 5 4 3 38 38 H 1.09001 * 110.02595 * 65.09139 * 10 8 6 39 39 H 1.08994 * 108.92377 * 304.73018 * 10 8 6 40 40 H 1.09002 * 109.62184 * 314.04398 * 11 10 8 41 41 H 1.08998 * 109.61736 * 193.68143 * 11 10 8 42 42 H 1.09003 * 109.35878 * 65.58870 * 12 11 10 43 43 H 1.09000 * 109.35885 * 185.17394 * 12 11 10 44 44 H 1.08999 * 117.53771 * 355.69354 * 15 13 12 45 45 H 1.08999 * 117.53763 * 140.94583 * 15 13 12 46 46 H 1.09000 * 109.47308 * 299.99802 * 20 18 2 47 47 H 1.09001 * 109.47274 * 59.99534 * 20 18 2 48 48 H 0.96998 * 120.00366 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1845 2.9794 -1.4426 6 6 3.5209 3.5631 -2.6099 7 8 3.2174 3.0381 -3.6602 8 6 4.2743 4.8682 -2.6099 9 1 5.2300 4.7319 -2.1036 10 6 3.4847 5.9291 -1.8482 11 6 4.2095 7.2739 -1.9766 12 6 3.9976 7.8126 -3.3914 13 6 4.4368 6.7740 -4.4213 14 1 5.1242 7.1358 -5.1860 15 6 3.3543 5.7896 -4.8901 16 6 4.5247 5.3031 -4.0455 17 1 5.2820 4.7213 -4.5710 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4723 0.0005 21 16 2.5616 -3.8481 0.0005 22 6 1.4415 -5.2082 0.0013 23 1 0.3763 -5.0306 0.0012 24 6 1.9283 -6.5081 0.0010 25 7 3.2266 -6.7247 -0.0004 26 14 0.7408 -7.9501 0.0011 27 1 -0.6546 -7.4422 0.0021 28 1 0.9663 -8.7771 -1.2116 29 1 0.9669 -8.7773 1.2134 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0283 0.5137 35 1 1.5001 1.8406 -1.9565 36 1 3.0416 0.9506 -1.9563 37 1 3.4269 3.3994 -0.6026 38 1 3.4079 5.6537 -0.7964 39 1 2.4880 6.0076 -2.2824 40 1 5.2750 7.1343 -1.7938 41 1 3.8032 7.9792 -1.2517 42 1 2.9418 8.0413 -3.5367 43 1 4.5836 8.7223 -3.5232 44 1 2.3772 5.8491 -4.4106 45 1 3.3455 5.5150 -5.9449 46 1 0.7585 -2.5299 0.8903 47 1 0.7591 -2.5303 -0.8897 48 1 3.5669 -7.6330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355701995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:59 Heat of formation + Delta-G solvation = -59.164771 kcal Electronic energy + Delta-G solvation = -26619.156799 eV Core-core repulsion = 22800.548739 eV Total energy + Delta-G solvation = -3818.608059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82656 -39.60620 -38.61487 -35.95917 -34.66237 -33.49278 -32.43551 -31.82481 -30.40025 -28.27920 -26.52803 -25.60909 -25.40980 -23.41464 -22.81523 -21.92258 -20.65596 -19.30539 -18.77254 -17.70965 -17.35294 -16.83493 -16.66517 -16.29748 -15.65245 -15.41495 -15.18758 -14.81057 -14.50023 -14.28331 -14.20785 -13.89419 -13.75948 -13.55908 -13.25942 -13.07535 -12.96606 -12.59644 -12.49336 -12.42129 -12.31119 -11.85557 -11.77155 -11.52643 -11.45487 -11.24875 -11.07509 -11.02643 -10.78726 -10.76017 -10.45258 -10.06040 -9.81716 -9.77788 -9.43784 -9.23224 -9.08006 -8.67960 -8.23619 -6.51200 -6.22398 -3.93124 2.49292 2.60065 2.98169 3.09092 3.21280 3.26873 3.31163 3.51992 3.66685 4.12406 4.19364 4.28323 4.31732 4.56837 4.64846 4.68456 4.72764 4.80259 4.82467 5.00484 5.04869 5.06204 5.07844 5.12907 5.19672 5.21764 5.27238 5.39712 5.47923 5.54315 5.56254 5.58633 5.65775 5.71921 5.74587 5.78330 5.81819 5.86274 5.89173 5.93586 5.95934 6.11138 6.17295 6.54969 7.28501 7.41865 7.59328 8.07270 8.34707 8.47541 9.23035 10.85110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.001761 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.265862 B =15895.023649 C =16197.698418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.109 3.891 4 C 0.103 3.897 5 N -0.728 5.728 6 C 0.517 3.483 7 O -0.528 6.528 8 C -0.075 4.075 9 H 0.100 0.900 10 C -0.114 4.114 11 C -0.117 4.117 12 C -0.090 4.090 13 C -0.151 4.151 14 H 0.103 0.897 15 C -0.164 4.164 16 C -0.118 4.118 17 H 0.103 0.897 18 C 0.533 3.467 19 O -0.512 6.512 20 C -0.150 4.150 21 S -0.062 6.062 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 30.818 -1.904 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.015 4.015 4 C -0.022 4.022 5 N -0.381 5.381 6 C 0.303 3.697 7 O -0.403 6.403 8 C -0.096 4.096 9 H 0.118 0.882 10 C -0.151 4.151 11 C -0.155 4.155 12 C -0.128 4.128 13 C -0.169 4.169 14 H 0.121 0.879 15 C -0.201 4.201 16 C -0.137 4.137 17 H 0.122 0.878 18 C 0.321 3.679 19 O -0.385 6.385 20 C -0.301 4.301 21 S 0.165 5.835 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.896 30.266 -2.677 30.397 hybrid contribution -2.124 -0.865 0.309 2.314 sum -3.020 29.401 -2.368 29.651 Atomic orbital electron populations 1.21821 0.79240 1.03286 1.02000 1.47741 1.06975 1.05182 1.76027 1.21456 0.98833 0.85699 0.95496 1.21754 0.96966 0.85406 0.98046 1.45873 1.59160 1.24350 1.08743 1.20558 0.79407 0.86210 0.83550 1.90728 1.53608 1.64802 1.31202 1.20564 1.00098 0.92465 0.96469 0.88190 1.21565 0.99419 0.94432 0.99722 1.21556 1.01006 0.96074 0.96818 1.21055 1.01254 0.97016 0.93427 1.22322 1.02719 0.90452 1.01420 0.87907 1.22996 0.93904 1.03149 1.00073 1.21360 1.02211 0.95592 0.94503 0.87844 1.20417 0.87974 0.84576 0.74896 1.90704 1.13710 1.86717 1.47367 1.23560 1.04597 0.97069 1.04839 1.85413 1.08034 0.93370 1.96706 1.22897 0.94333 0.92169 1.58897 0.90854 1.24998 0.95681 0.98400 0.94526 1.70025 1.11739 1.21585 1.46894 0.86112 0.80335 0.81108 0.77908 1.19607 1.20552 1.20566 0.92599 0.90371 0.91302 0.89209 0.90308 0.91453 0.90682 0.76718 0.90972 0.91337 0.91286 0.91373 0.91635 0.91460 0.89049 0.88929 0.89131 0.89128 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.29 59.85 0.62 1.39 16 2 N -0.62 -8.31 2.87 -181.58 -0.52 -8.83 16 3 C 0.11 1.17 5.57 -4.04 -0.02 1.15 16 4 C 0.10 1.21 6.00 -4.04 -0.02 1.19 16 5 N -0.73 -6.82 5.45 -60.29 -0.33 -7.15 16 6 C 0.52 5.77 7.15 -10.99 -0.08 5.69 16 7 O -0.53 -8.26 15.66 5.56 0.09 -8.18 16 8 C -0.07 -0.58 2.51 -92.44 -0.23 -0.82 16 9 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 10 C -0.11 -0.64 4.85 -26.77 -0.13 -0.77 16 11 C -0.12 -0.56 5.92 -26.64 -0.16 -0.72 16 12 C -0.09 -0.49 5.84 -26.94 -0.16 -0.65 16 13 C -0.15 -1.05 6.19 -90.90 -0.56 -1.61 16 14 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 15 C -0.16 -1.44 9.16 -26.75 -0.24 -1.69 16 16 C -0.12 -1.03 4.71 -91.91 -0.43 -1.47 16 17 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 18 C 0.53 9.94 7.69 -10.99 -0.08 9.85 16 19 O -0.51 -11.47 15.44 5.56 0.09 -11.38 16 20 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 21 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 22 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 23 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 26 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 32 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 33 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 34 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 35 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.40 2.44 7.93 -40.82 -0.32 2.11 16 38 H 0.07 0.29 7.67 -51.93 -0.40 -0.11 16 39 H 0.07 0.45 7.12 -51.93 -0.37 0.08 16 40 H 0.07 0.33 8.06 -51.93 -0.42 -0.09 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.83 7.27 -51.93 -0.38 0.45 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 47 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -36.75 400.32 -10.29 -47.04 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.00 Total: -0.32 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.14 Total: -4.25 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.12 Total: -41.45 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.75 -10.29 -47.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355701995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.129 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds