Wall clock time and date at job start Tue Mar 31 2020 22:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99735 * 2 1 4 4 C 1.53003 * 109.46761 * 269.99217 * 3 2 1 5 5 N 1.46505 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99747 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99563 * 180.02562 * 6 5 4 9 9 H 1.09006 * 109.26765 * 60.50225 * 8 6 5 10 10 C 1.52613 * 110.08212 * 302.07850 * 8 6 5 11 11 C 1.53301 * 108.86697 * 185.23592 * 10 8 6 12 12 C 1.52875 * 108.72981 * 73.86395 * 11 10 8 13 13 C 1.52713 * 110.15610 * 305.38313 * 12 11 10 14 14 H 1.09003 * 115.38850 * 231.22360 * 13 12 11 15 15 C 1.53650 * 116.03195 * 90.20324 * 13 12 11 16 16 C 1.52074 * 120.51849 * 21.47137 * 13 12 11 17 17 H 1.09000 * 115.92844 * 210.74405 * 16 13 12 18 18 C 1.34774 * 120.00137 * 179.97438 * 2 1 3 19 19 O 1.21276 * 120.00133 * 180.02562 * 18 2 1 20 20 C 1.50701 * 120.00086 * 0.02562 * 18 2 1 21 21 S 1.80998 * 109.47494 * 179.97438 * 20 18 2 22 22 C 1.76201 * 100.00164 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00331 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99898 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99860 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47219 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46992 * 120.00178 * 26 24 22 29 29 H 1.48500 * 109.46749 * 240.00002 * 26 24 22 30 30 H 1.09003 * 109.46759 * 90.00518 * 1 2 3 31 31 H 1.09002 * 109.47260 * 209.99922 * 1 2 3 32 32 H 1.08996 * 109.47490 * 330.00209 * 1 2 3 33 33 H 1.09005 * 109.46716 * 150.00186 * 3 2 1 34 34 H 1.08989 * 109.47412 * 29.99542 * 3 2 1 35 35 H 1.09008 * 109.46974 * 60.00505 * 4 3 2 36 36 H 1.08998 * 109.47578 * 300.00587 * 4 3 2 37 37 H 0.96997 * 119.99837 * 0.02562 * 5 4 3 38 38 H 1.09001 * 110.02595 * 65.09139 * 10 8 6 39 39 H 1.08994 * 108.92377 * 304.73018 * 10 8 6 40 40 H 1.09002 * 109.62184 * 314.04398 * 11 10 8 41 41 H 1.08998 * 109.61736 * 193.68143 * 11 10 8 42 42 H 1.09003 * 109.35878 * 65.58870 * 12 11 10 43 43 H 1.09000 * 109.35885 * 185.17394 * 12 11 10 44 44 H 1.08999 * 117.53771 * 355.69354 * 15 13 12 45 45 H 1.08999 * 117.53763 * 140.94583 * 15 13 12 46 46 H 1.09000 * 109.47308 * 299.99802 * 20 18 2 47 47 H 1.09001 * 109.47274 * 59.99534 * 20 18 2 48 48 H 0.96998 * 120.00366 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1845 2.9794 -1.4426 6 6 3.5209 3.5631 -2.6099 7 8 3.2174 3.0381 -3.6602 8 6 4.2743 4.8682 -2.6099 9 1 5.2300 4.7319 -2.1036 10 6 3.4847 5.9291 -1.8482 11 6 4.2095 7.2739 -1.9766 12 6 3.9976 7.8126 -3.3914 13 6 4.4368 6.7740 -4.4213 14 1 5.1242 7.1358 -5.1860 15 6 3.3543 5.7896 -4.8901 16 6 4.5247 5.3031 -4.0455 17 1 5.2820 4.7213 -4.5710 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4723 0.0005 21 16 2.5616 -3.8481 0.0005 22 6 1.4415 -5.2082 0.0013 23 1 0.3763 -5.0306 0.0012 24 6 1.9283 -6.5081 0.0010 25 7 3.2266 -6.7247 -0.0004 26 14 0.7408 -7.9501 0.0011 27 1 -0.6546 -7.4422 0.0021 28 1 0.9663 -8.7771 -1.2116 29 1 0.9669 -8.7773 1.2134 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0283 0.5137 35 1 1.5001 1.8406 -1.9565 36 1 3.0416 0.9506 -1.9563 37 1 3.4269 3.3994 -0.6026 38 1 3.4079 5.6537 -0.7964 39 1 2.4880 6.0076 -2.2824 40 1 5.2750 7.1343 -1.7938 41 1 3.8032 7.9792 -1.2517 42 1 2.9418 8.0413 -3.5367 43 1 4.5836 8.7223 -3.5232 44 1 2.3772 5.8491 -4.4106 45 1 3.3455 5.5150 -5.9449 46 1 0.7585 -2.5299 0.8903 47 1 0.7591 -2.5303 -0.8897 48 1 3.5669 -7.6330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355701995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:58 Heat of formation + Delta-G solvation = -83.924909 kcal Electronic energy + Delta-G solvation = -26620.230479 eV Core-core repulsion = 22800.548739 eV Total energy + Delta-G solvation = -3819.681739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58660 -40.89105 -39.43073 -37.14826 -35.70044 -34.59807 -34.06634 -32.52599 -31.54778 -29.47911 -27.71138 -27.42791 -26.15235 -24.34006 -23.39742 -22.67870 -21.47723 -20.61793 -19.59092 -19.38037 -18.20889 -18.03914 -17.60429 -17.19506 -16.90188 -16.81215 -16.52343 -16.25162 -15.75895 -15.22025 -15.09503 -14.80752 -14.60687 -14.38264 -14.36605 -14.24446 -14.16382 -13.69388 -13.58957 -13.25085 -13.16162 -13.07452 -13.03284 -12.91864 -12.63067 -12.36548 -12.31360 -12.06807 -11.75398 -11.71069 -11.32873 -11.17025 -11.14015 -10.97265 -10.65608 -10.54891 -10.28015 -10.17281 -9.80947 -8.68954 -8.36022 -6.14451 1.22961 1.40683 1.42763 1.51140 1.56374 1.61474 1.86714 2.25652 2.35838 2.90747 2.98302 3.25122 3.52935 3.67345 3.71492 3.76887 3.85265 3.99748 4.01579 4.08467 4.19752 4.24514 4.28067 4.28745 4.40496 4.47641 4.52676 4.56382 4.65719 4.69749 4.73818 4.75360 4.88341 4.89397 4.95830 5.07895 5.10711 5.17873 5.28509 5.30358 5.32378 5.37727 5.40882 5.50806 5.53996 6.17901 6.20003 6.51720 7.05298 7.08827 7.24486 8.73544 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.001761 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.265862 B =15895.023649 C =16197.698418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.113 3.887 4 C 0.113 3.887 5 N -0.713 5.713 6 C 0.512 3.488 7 O -0.581 6.581 8 C -0.068 4.068 9 H 0.117 0.883 10 C -0.109 4.109 11 C -0.114 4.114 12 C -0.092 4.092 13 C -0.128 4.128 14 H 0.109 0.891 15 C -0.181 4.181 16 C -0.135 4.135 17 H 0.085 0.915 18 C 0.530 3.470 19 O -0.561 6.561 20 C -0.124 4.124 21 S -0.156 6.156 22 C -0.545 4.545 23 H 0.084 0.916 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 1.000 3.000 27 H -0.255 1.255 28 H -0.275 1.275 29 H -0.273 1.273 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.418 0.582 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 33.188 -0.288 33.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.010 4.010 4 C -0.013 4.013 5 N -0.367 5.367 6 C 0.300 3.700 7 O -0.460 6.460 8 C -0.089 4.089 9 H 0.134 0.866 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.129 4.129 13 C -0.146 4.146 14 H 0.127 0.873 15 C -0.218 4.218 16 C -0.154 4.154 17 H 0.103 0.897 18 C 0.318 3.682 19 O -0.439 6.439 20 C -0.275 4.275 21 S 0.072 5.928 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.821 3.179 27 H -0.179 1.179 28 H -0.201 1.201 29 H -0.198 1.198 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.256 0.744 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.123 0.877 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.223 32.704 -1.022 32.878 hybrid contribution -1.444 -1.466 -0.237 2.071 sum -4.667 31.238 -1.259 31.610 Atomic orbital electron populations 1.22170 0.76438 1.05386 1.03231 1.47722 1.08684 1.04352 1.73563 1.21647 0.99156 0.85385 0.94847 1.21489 0.96244 0.85217 0.98312 1.45715 1.58276 1.23267 1.09399 1.21262 0.78770 0.86989 0.83014 1.90705 1.55803 1.66365 1.33144 1.20586 1.00658 0.91210 0.96414 0.86555 1.21603 0.98489 0.94105 1.00500 1.21565 1.01295 0.95667 0.96592 1.21129 1.01536 0.96865 0.93406 1.22427 1.01051 0.89736 1.01425 0.87290 1.22973 0.94144 1.05135 0.99510 1.21416 1.01772 0.97056 0.95109 0.89656 1.20199 0.87311 0.85634 0.75105 1.90687 1.15655 1.87466 1.50121 1.23384 1.02731 0.94939 1.06479 1.85597 1.12770 0.97445 1.97033 1.23231 0.94636 0.92591 1.58795 0.89820 1.26150 0.97615 1.01742 0.93725 1.70191 1.14141 1.22431 1.48058 0.84891 0.78200 0.76698 0.78067 1.17898 1.20079 1.19799 0.91774 0.90393 0.87201 0.90497 0.85087 0.91341 0.95516 0.74414 0.88596 0.92276 0.90814 0.89566 0.91533 0.90048 0.89488 0.90054 0.86925 0.87739 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.29 127.77 1.31 2.41 16 2 N -0.61 -15.09 2.87 -846.77 -2.43 -17.52 16 3 C 0.11 2.16 5.57 86.38 0.48 2.64 16 4 C 0.11 2.60 6.00 86.38 0.52 3.12 16 5 N -0.71 -12.52 5.45 -463.05 -2.53 -15.04 16 6 C 0.51 11.40 7.15 87.65 0.63 12.03 16 7 O -0.58 -19.09 15.66 -3.02 -0.05 -19.14 16 8 C -0.07 -0.99 2.51 -11.98 -0.03 -1.02 16 9 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 10 C -0.11 -0.94 4.85 30.57 0.15 -0.79 16 11 C -0.11 -0.73 5.92 30.65 0.18 -0.55 16 12 C -0.09 -0.78 5.84 30.46 0.18 -0.60 16 13 C -0.13 -1.67 6.19 -10.98 -0.07 -1.73 16 14 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 15 C -0.18 -3.29 9.16 30.58 0.28 -3.01 16 16 C -0.13 -2.39 4.71 -11.63 -0.05 -2.44 16 17 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 18 C 0.53 19.76 7.69 87.66 0.67 20.43 16 19 O -0.56 -26.13 15.44 -3.02 -0.05 -26.18 16 20 C -0.12 -4.98 4.71 71.24 0.34 -4.64 16 21 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 22 C -0.54 -31.33 9.50 67.96 0.65 -30.68 16 23 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 24 C 0.01 0.71 5.49 84.86 0.47 1.17 16 25 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 26 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 27 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.28 6.44 -2.39 -0.02 1.27 16 32 H 0.11 0.92 7.89 -2.39 -0.02 0.90 16 33 H 0.08 1.75 7.42 -2.38 -0.02 1.73 16 34 H 0.13 1.24 7.89 -2.39 -0.02 1.22 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.42 4.00 7.93 -92.71 -0.73 3.27 16 38 H 0.10 0.38 7.67 -2.39 -0.02 0.36 16 39 H 0.06 0.65 7.12 -2.39 -0.02 0.64 16 40 H 0.07 0.45 8.06 -2.39 -0.02 0.43 16 41 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.07 0.58 8.06 -2.39 -0.02 0.57 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.09 1.63 7.27 -2.39 -0.02 1.61 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.11 3.99 7.40 -2.39 -0.02 3.97 16 47 H 0.10 3.87 8.11 -2.39 -0.02 3.85 16 48 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -86.46 400.32 2.01 -84.45 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.22 Total: 17.39 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.70 Total: -3.67 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.67 Total: -88.81 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.09 Total: -45.32 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -86.46 2.01 -84.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355701995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.525 kcal (2) G-P(sol) polarization free energy of solvation -86.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds