Wall clock time and date at job start Tue Mar 31 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99656 * 2 1 4 4 C 1.53004 * 109.47613 * 270.00042 * 3 2 1 5 5 N 1.46489 * 109.47611 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00463 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99606 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00290 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.35688 * 59.71365 * 8 6 5 10 10 C 1.52884 * 109.35510 * 299.99458 * 8 6 5 11 11 C 1.53292 * 108.57992 * 185.27007 * 10 8 6 12 12 C 1.52879 * 108.58972 * 74.44699 * 11 10 8 13 13 C 1.52070 * 110.51227 * 305.10398 * 12 11 10 14 14 H 1.09005 * 114.63882 * 165.62535 * 13 12 11 15 15 C 1.52304 * 119.84276 * 310.45302 * 13 12 11 16 16 C 1.52074 * 120.02038 * 21.70507 * 13 12 11 17 17 H 1.09001 * 117.25426 * 144.43245 * 16 13 12 18 18 C 1.34779 * 120.00046 * 180.02562 * 2 1 3 19 19 O 1.21283 * 119.99753 * 179.97438 * 18 2 1 20 20 C 1.50701 * 119.99843 * 359.97438 * 18 2 1 21 21 S 1.81001 * 109.46896 * 179.97438 * 20 18 2 22 22 C 1.76192 * 100.00053 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00436 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99929 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00253 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99752 * 179.72153 * 24 22 21 27 27 H 1.48498 * 109.46603 * 90.00499 * 26 24 22 28 28 H 1.48496 * 109.47225 * 210.00416 * 26 24 22 29 29 H 1.48494 * 109.47296 * 330.00427 * 26 24 22 30 30 H 1.09002 * 109.46962 * 269.99660 * 1 2 3 31 31 H 1.08999 * 109.47679 * 29.99974 * 1 2 3 32 32 H 1.09010 * 109.47073 * 149.99899 * 1 2 3 33 33 H 1.09002 * 109.47152 * 30.00559 * 3 2 1 34 34 H 1.09007 * 109.47033 * 150.00434 * 3 2 1 35 35 H 1.09003 * 109.46470 * 300.00865 * 4 3 2 36 36 H 1.09002 * 109.46562 * 59.99626 * 4 3 2 37 37 H 0.97006 * 119.99774 * 359.97438 * 5 4 3 38 38 H 1.09002 * 109.61717 * 305.00268 * 10 8 6 39 39 H 1.08997 * 109.61729 * 65.35652 * 10 8 6 40 40 H 1.08995 * 109.61706 * 194.17304 * 11 10 8 41 41 H 1.08995 * 109.61932 * 314.71560 * 11 10 8 42 42 H 1.08997 * 109.27052 * 65.37650 * 12 11 10 43 43 H 1.09000 * 109.26496 * 184.84644 * 12 11 10 44 44 H 1.09001 * 117.53763 * 217.19368 * 15 13 12 45 45 H 1.09003 * 117.53930 * 2.44423 * 15 13 12 46 46 H 1.08998 * 109.46989 * 60.00366 * 20 18 2 47 47 H 1.08996 * 109.47123 * 299.99392 * 20 18 2 48 48 H 0.97000 * 120.00481 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1853 2.9789 -1.4425 6 6 3.5219 3.5628 -2.6096 7 8 3.2184 3.0379 -3.6599 8 6 4.2764 4.8674 -2.6096 9 1 5.2263 4.7353 -2.0917 10 6 3.4492 5.9311 -1.8874 11 6 4.1698 7.2783 -2.0123 12 6 3.9873 7.7983 -3.4383 13 6 4.4583 6.7628 -4.4475 14 1 4.1394 6.9498 -5.4729 15 6 5.8256 6.1121 -4.2838 16 6 4.5440 5.2973 -4.0503 17 1 4.2963 4.5583 -4.8123 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4723 -0.0005 21 16 2.5616 -3.8480 -0.0020 22 6 1.4416 -5.2082 -0.0010 23 1 0.3763 -5.0306 -0.0002 24 6 1.9284 -6.5081 -0.0023 25 7 3.2267 -6.7246 -0.0038 26 14 0.7409 -7.9501 0.0067 27 1 0.4181 -8.3339 -1.3910 28 1 1.3664 -9.1020 0.7045 29 1 -0.5055 -7.5606 0.7136 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8901 -0.5139 33 1 1.6083 2.0283 0.5139 34 1 3.1499 1.1384 0.5138 35 1 3.0415 0.9508 -1.9563 36 1 1.5000 1.8408 -1.9563 37 1 3.4278 3.3990 -0.6024 38 1 2.4622 6.0001 -2.3449 39 1 3.3470 5.6636 -0.8357 40 1 3.7414 7.9893 -1.3059 41 1 5.2315 7.1461 -1.8041 42 1 2.9329 8.0146 -3.6101 43 1 4.5667 8.7129 -3.5645 44 1 6.3966 5.9048 -5.1888 45 1 6.4136 6.3883 -3.4085 46 1 0.7584 -2.5298 -0.8903 47 1 0.7592 -2.5303 0.8897 48 1 3.5670 -7.6330 -0.0043 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355702000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:03 Heat of formation + Delta-G solvation = -60.934131 kcal Electronic energy + Delta-G solvation = -26519.765612 eV Core-core repulsion = 22701.080828 eV Total energy + Delta-G solvation = -3818.684784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78596 -39.61113 -38.73795 -35.98400 -34.67223 -33.53556 -32.43367 -31.80884 -30.41019 -28.28402 -26.55173 -25.64042 -25.41862 -23.20082 -23.11517 -21.76900 -20.68222 -19.27569 -18.80117 -17.79993 -17.68064 -16.77303 -16.53054 -16.07912 -15.64666 -15.44128 -15.04614 -14.80804 -14.79633 -14.38811 -14.17372 -13.87771 -13.82356 -13.57279 -13.26299 -13.00434 -12.98314 -12.57643 -12.46403 -12.36983 -12.31677 -11.95814 -11.82590 -11.64843 -11.46769 -11.38064 -11.06676 -11.02908 -10.77146 -10.76398 -10.24327 -10.06439 -9.93390 -9.81677 -9.44417 -9.26325 -9.07026 -8.67543 -8.23981 -6.51091 -6.22012 -3.92869 2.45709 2.60810 2.97660 3.12994 3.22297 3.27943 3.31538 3.40429 3.61260 4.13310 4.19689 4.24421 4.32084 4.56106 4.66128 4.67331 4.72352 4.76039 4.85917 4.97251 4.98036 5.05912 5.07074 5.13180 5.17520 5.24204 5.31446 5.39956 5.43552 5.47001 5.54319 5.59899 5.65502 5.67214 5.70367 5.77734 5.82970 5.84340 5.88693 5.90663 6.01592 6.11228 6.18236 6.54472 7.25554 7.41918 7.59147 8.03083 8.34645 8.47577 9.23229 10.85403 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.001747 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.187409 B =16022.444216 C =16472.101151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.109 3.891 4 C 0.102 3.898 5 N -0.726 5.726 6 C 0.519 3.481 7 O -0.534 6.534 8 C -0.074 4.074 9 H 0.100 0.900 10 C -0.110 4.110 11 C -0.121 4.121 12 C -0.090 4.090 13 C -0.139 4.139 14 H 0.099 0.901 15 C -0.182 4.182 16 C -0.138 4.138 17 H 0.122 0.878 18 C 0.533 3.467 19 O -0.512 6.512 20 C -0.150 4.150 21 S -0.061 6.061 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 30.843 -1.918 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.379 5.379 6 C 0.305 3.695 7 O -0.410 6.410 8 C -0.095 4.095 9 H 0.118 0.882 10 C -0.148 4.148 11 C -0.158 4.158 12 C -0.127 4.127 13 C -0.157 4.157 14 H 0.117 0.883 15 C -0.219 4.219 16 C -0.156 4.156 17 H 0.140 0.860 18 C 0.321 3.679 19 O -0.385 6.385 20 C -0.301 4.301 21 S 0.165 5.835 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.418 30.286 -2.672 30.407 hybrid contribution -2.108 -0.812 0.333 2.284 sum -2.526 29.474 -2.340 29.675 Atomic orbital electron populations 1.21812 0.79247 1.03364 1.01931 1.47744 1.06969 1.05163 1.76061 1.21433 0.98838 0.85804 0.95431 1.21768 0.96987 0.85395 0.98103 1.45829 1.58991 1.24363 1.08709 1.20523 0.79253 0.86214 0.83502 1.90702 1.54117 1.64902 1.31278 1.20778 0.99677 0.92394 0.96644 0.88204 1.21568 0.99222 0.94164 0.99831 1.21601 1.00912 0.96370 0.96918 1.20863 1.01325 0.97146 0.93362 1.21854 1.00185 0.93400 1.00251 0.88285 1.23156 0.90518 1.04784 1.03445 1.22130 1.02100 0.94714 0.96658 0.85990 1.20428 0.87979 0.84588 0.74894 1.90706 1.13707 1.86721 1.47379 1.23557 1.04603 0.97071 1.04836 1.85409 1.08011 0.93347 1.96713 1.22854 0.94301 0.92186 1.59028 0.90912 1.24994 0.95677 0.98384 0.94517 1.70014 1.11748 1.21682 1.46796 0.86166 0.80249 0.80706 0.78366 1.20262 1.20743 1.19692 0.92481 0.91332 0.90412 0.90272 0.89167 0.90614 0.91403 0.76627 0.90980 0.91190 0.91204 0.91494 0.91381 0.91410 0.88785 0.88713 0.89113 0.89144 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.24 59.85 0.61 1.39 16 2 N -0.62 -8.29 2.87 -181.56 -0.52 -8.81 16 3 C 0.11 1.16 5.52 -4.04 -0.02 1.14 16 4 C 0.10 1.19 6.00 -4.05 -0.02 1.17 16 5 N -0.73 -6.78 5.46 -60.30 -0.33 -7.11 16 6 C 0.52 5.82 7.15 -10.99 -0.08 5.74 16 7 O -0.53 -8.41 15.32 5.56 0.09 -8.32 16 8 C -0.07 -0.58 2.46 -91.98 -0.23 -0.81 16 9 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 10 C -0.11 -0.63 5.05 -26.64 -0.13 -0.76 16 11 C -0.12 -0.58 5.70 -26.64 -0.15 -0.73 16 12 C -0.09 -0.49 5.93 -27.27 -0.16 -0.65 16 13 C -0.14 -0.98 6.00 -91.92 -0.55 -1.53 16 14 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.18 -1.30 9.66 -26.75 -0.26 -1.56 16 16 C -0.14 -1.22 5.48 -90.90 -0.50 -1.72 16 17 H 0.12 1.40 6.80 -51.93 -0.35 1.05 16 18 C 0.53 9.92 7.69 -10.98 -0.08 9.84 16 19 O -0.51 -11.46 15.44 5.55 0.09 -11.37 16 20 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 21 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 22 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 26 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.08 0.79 6.44 -51.92 -0.33 0.46 16 33 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.09 1.08 7.42 -51.93 -0.39 0.70 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.42 7.99 -40.82 -0.33 2.09 16 38 H 0.07 0.48 8.04 -51.93 -0.42 0.07 16 39 H 0.07 0.28 7.71 -51.93 -0.40 -0.12 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.31 7.11 -51.93 -0.37 -0.05 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.59 7.26 -51.93 -0.38 0.21 16 46 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 47 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -36.68 400.08 -10.32 -47.00 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.95 Total: -0.16 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.21 Total: -4.29 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.12 Total: -41.39 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.17 Total: -19.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.68 -10.32 -47.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355702000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.937 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds