Wall clock time and date at job start Tue Mar 31 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00342 * 2 1 4 4 C 1.52996 * 109.47248 * 270.00077 * 3 2 1 5 5 N 1.46499 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00549 * 270.27942 * 5 4 3 7 7 C 1.34776 * 119.99660 * 89.99916 * 5 4 3 8 8 O 1.21285 * 120.00267 * 354.91647 * 7 5 4 9 9 C 1.50707 * 119.99934 * 174.91666 * 7 5 4 10 10 C 1.53005 * 115.54962 * 193.25079 * 9 7 5 11 11 C 1.53003 * 117.49689 * 34.32725 * 10 9 7 12 12 C 1.53000 * 117.49695 * 325.67035 * 10 9 7 13 13 C 1.52995 * 117.49944 * 47.58007 * 9 7 5 14 14 C 1.52999 * 117.49765 * 338.91494 * 9 7 5 15 15 C 1.34781 * 119.99575 * 180.02562 * 2 1 3 16 16 O 1.21291 * 119.99485 * 179.97438 * 15 2 1 17 17 C 1.50695 * 120.00310 * 359.97438 * 15 2 1 18 18 S 1.81001 * 109.47060 * 180.02562 * 17 15 2 19 19 C 1.76205 * 99.99700 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00181 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99550 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99490 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00403 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46973 * 90.00381 * 23 21 19 25 25 H 1.48499 * 109.47042 * 210.00573 * 23 21 19 26 26 H 1.48499 * 109.46898 * 330.00516 * 23 21 19 27 27 H 1.09003 * 109.46724 * 89.99474 * 1 2 3 28 28 H 1.08990 * 109.47085 * 209.99481 * 1 2 3 29 29 H 1.09000 * 109.46446 * 329.99999 * 1 2 3 30 30 H 1.09003 * 109.46994 * 149.99860 * 3 2 1 31 31 H 1.08997 * 109.46769 * 30.00224 * 3 2 1 32 32 H 1.09003 * 109.47301 * 59.99970 * 4 3 2 33 33 H 1.08997 * 109.47355 * 299.99788 * 4 3 2 34 34 H 1.08997 * 109.46991 * 271.15266 * 6 5 4 35 35 H 1.09009 * 109.46897 * 31.14948 * 6 5 4 36 36 H 1.09001 * 109.47292 * 151.14411 * 6 5 4 37 37 H 1.08999 * 115.54584 * 179.97438 * 10 9 7 38 38 H 1.08997 * 117.49979 * 0.02562 * 11 10 9 39 39 H 1.09004 * 117.49329 * 145.01982 * 11 10 9 40 40 H 1.08999 * 117.49571 * 214.98088 * 12 10 9 41 41 H 1.08998 * 117.49806 * 359.97391 * 12 10 9 42 42 H 1.08999 * 117.50127 * 359.97438 * 13 9 7 43 43 H 1.08997 * 117.49850 * 145.02200 * 13 9 7 44 44 H 1.09001 * 117.49978 * 214.97854 * 14 9 7 45 45 H 1.08999 * 117.49915 * 359.97438 * 14 9 7 46 46 H 1.09002 * 109.46997 * 300.00066 * 17 15 2 47 47 H 1.08996 * 109.46961 * 60.00225 * 17 15 2 48 48 H 0.96998 * 119.99908 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 7 3.1846 2.9794 -1.4424 6 6 2.4518 4.2479 -1.4364 7 6 4.5324 2.9798 -1.4423 8 8 5.1392 1.9338 -1.3490 9 6 5.2855 4.2800 -1.5579 10 6 6.7792 4.1525 -1.8640 11 6 7.2193 2.9984 -2.7670 12 6 7.5229 2.9559 -1.2673 13 6 4.8455 5.4340 -0.6549 14 6 4.5418 5.4765 -2.1547 15 6 2.1388 -1.1673 -0.0005 16 8 3.3517 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0005 18 16 2.5615 -3.8481 -0.0005 19 6 1.4413 -5.2082 -0.0013 20 1 0.3760 -5.0305 -0.0012 21 6 1.9281 -6.5081 -0.0010 22 7 1.0912 -7.5242 -0.0010 23 14 3.7705 -6.8155 -0.0004 24 1 4.2584 -6.8969 1.3998 25 1 4.0594 -8.0930 -0.7003 26 1 4.4585 -5.7011 -0.7004 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3632 0.8900 0.5139 30 1 3.1500 1.1383 0.5139 31 1 1.6085 2.0283 0.5139 32 1 1.5002 1.8408 -1.9563 33 1 3.0417 0.9508 -1.9563 34 1 2.2480 4.5546 -2.4623 35 1 1.5106 4.1212 -0.9012 36 1 3.0514 5.0116 -0.9411 37 1 7.3238 5.0929 -1.9480 38 1 6.4446 2.3303 -3.1433 39 1 8.0538 3.1795 -3.4445 40 1 8.5570 3.1091 -0.9587 41 1 6.9482 2.2599 -0.6563 42 1 4.0110 5.2530 0.0225 43 1 5.6200 6.1026 -0.2792 44 1 5.1167 6.1731 -2.7650 45 1 3.5080 5.3231 -2.4641 46 1 0.7590 -2.5302 0.8897 47 1 0.7584 -2.5298 -0.8903 48 1 1.4313 -8.4326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357168131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:48 Heat of formation + Delta-G solvation = 39.744590 kcal Electronic energy + Delta-G solvation = -27692.262288 eV Core-core repulsion = 23877.943261 eV Total energy + Delta-G solvation = -3814.319027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31562 -39.53115 -37.58426 -37.07228 -35.61560 -34.48679 -32.41137 -30.95916 -28.70267 -27.67823 -26.60388 -25.59901 -24.59048 -23.58531 -23.18866 -22.18188 -21.50204 -19.42764 -19.24685 -17.65488 -16.95366 -16.73946 -16.34761 -16.16175 -15.79749 -15.53832 -15.17972 -14.89653 -14.83321 -14.27981 -13.93200 -13.79627 -13.56937 -13.48423 -13.31336 -12.99891 -12.76144 -12.63064 -12.58004 -12.36729 -11.98842 -11.79022 -11.69094 -11.55888 -11.25088 -11.23340 -11.11623 -11.07174 -10.97304 -10.55915 -10.23924 -9.82730 -9.73246 -9.62299 -9.42661 -9.18373 -8.97298 -8.47371 -8.43802 -6.88475 -6.26497 -3.97750 2.20138 2.48538 2.84706 2.99565 3.27528 3.32790 3.36803 3.55202 3.63968 3.88873 3.97495 4.08262 4.36430 4.41711 4.54035 4.56708 4.61880 4.79566 4.83337 4.91007 4.99618 5.01492 5.07401 5.09043 5.12717 5.14319 5.18440 5.22212 5.27019 5.38403 5.42845 5.47744 5.54711 5.61383 5.68893 5.73205 5.79973 5.82646 5.88449 6.02688 6.11479 6.19120 6.38788 6.58794 7.10086 7.44200 7.96624 8.00939 8.43456 8.48814 9.20086 10.82672 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002571 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.722853 B =10888.427808 C =12307.354819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.107 3.893 4 C 0.103 3.897 5 N -0.615 5.615 6 C 0.036 3.964 7 C 0.543 3.457 8 O -0.505 6.505 9 C -0.118 4.118 10 C -0.120 4.120 11 C -0.168 4.168 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.190 4.190 15 C 0.527 3.473 16 O -0.504 6.504 17 C -0.120 4.120 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.131 0.869 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 32.028 -3.340 32.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C -0.017 4.017 4 C -0.021 4.021 5 N -0.349 5.349 6 C -0.106 4.106 7 C 0.331 3.669 8 O -0.379 6.379 9 C -0.121 4.121 10 C -0.138 4.138 11 C -0.205 4.205 12 C -0.205 4.205 13 C -0.199 4.199 14 C -0.226 4.226 15 C 0.314 3.686 16 O -0.377 6.377 17 C -0.270 4.270 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.158 1.158 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.148 0.852 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.399 31.234 -3.293 31.591 hybrid contribution -1.017 -0.305 -0.052 1.063 sum 2.383 30.929 -3.345 31.201 Atomic orbital electron populations 1.21816 0.79411 1.03313 1.01858 1.47770 1.06835 1.05409 1.76034 1.21688 0.98466 0.84813 0.96778 1.21873 0.96689 0.85583 0.97938 1.47687 1.05576 1.06873 1.74809 1.23073 0.98395 0.87166 1.01985 1.19606 0.81536 0.89664 0.76092 1.90759 1.66674 1.33061 1.47363 1.20902 0.94809 0.88769 1.07642 1.21378 0.90605 0.94369 1.07479 1.22930 1.03174 1.00588 0.93800 1.23258 1.00136 1.00153 0.96984 1.23305 1.03546 0.99516 0.93579 1.24197 1.03610 0.98879 0.95895 1.20382 0.88075 0.84607 0.75521 1.90763 1.13487 1.86599 1.46803 1.23306 1.03041 0.95173 1.05508 1.84871 1.11878 0.97480 1.97392 1.22313 0.94862 0.90923 1.58670 0.89421 1.24708 0.98539 0.94877 0.93174 1.69941 1.34781 0.98863 1.48202 0.86742 0.85380 0.79842 0.79967 1.19203 1.19954 1.15848 0.92659 0.90404 0.91382 0.89405 0.91024 0.90531 0.89149 0.91937 0.91351 0.87408 0.87389 0.88311 0.89342 0.89638 0.86172 0.87002 0.87441 0.87976 0.85173 0.88589 0.88555 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.29 59.85 0.62 1.37 16 2 N -0.62 -8.53 2.87 -181.57 -0.52 -9.05 16 3 C 0.11 1.30 5.77 -4.04 -0.02 1.28 16 4 C 0.10 1.17 5.70 -4.04 -0.02 1.15 16 5 N -0.61 -5.94 2.87 -181.57 -0.52 -6.47 16 6 C 0.04 0.18 8.51 59.85 0.51 0.69 16 7 C 0.54 6.60 7.05 -10.98 -0.08 6.52 16 8 O -0.50 -8.41 11.71 5.55 0.07 -8.34 16 9 C -0.12 -1.06 2.46 -155.66 -0.38 -1.44 16 10 C -0.12 -1.16 5.85 -90.62 -0.53 -1.69 16 11 C -0.17 -1.91 9.69 -26.69 -0.26 -2.17 16 12 C -0.17 -1.99 9.67 -26.69 -0.26 -2.25 16 13 C -0.16 -0.93 9.09 -26.69 -0.24 -1.17 16 14 C -0.19 -1.04 9.08 -26.69 -0.24 -1.28 16 15 C 0.53 9.95 7.69 -10.99 -0.08 9.86 16 16 O -0.50 -11.68 15.44 5.55 0.09 -11.59 16 17 C -0.12 -2.39 4.71 36.00 0.17 -2.23 16 18 S -0.14 -3.73 18.55 -107.50 -1.99 -5.73 16 19 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.89 13.97 55.49 0.78 -26.12 16 23 Si 0.86 22.31 27.74 -169.99 -4.71 17.60 16 24 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.23 -6.16 6.74 56.52 0.38 -5.78 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 29 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 30 H 0.09 1.38 7.42 -51.93 -0.39 1.00 16 31 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 32 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.09 1.40 7.50 -51.93 -0.39 1.01 16 34 H 0.06 0.25 6.69 -51.93 -0.35 -0.10 16 35 H 0.07 0.26 8.08 -51.92 -0.42 -0.16 16 36 H 0.11 0.43 2.41 -51.93 -0.13 0.31 16 37 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.36 6.73 -51.93 -0.35 1.01 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.12 1.79 5.84 -51.93 -0.30 1.49 16 42 H 0.11 0.53 6.15 -51.93 -0.32 0.22 16 43 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.13 0.56 3.77 -51.93 -0.20 0.36 16 46 H 0.10 1.77 7.40 -51.91 -0.38 1.39 16 47 H 0.10 1.79 8.11 -51.92 -0.42 1.37 16 48 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -37.24 390.78 -8.88 -46.12 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.33 Total: 1.20 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.61 Total: -3.50 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.27 Total: -41.63 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.15 Total: -19.93 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.24 -8.88 -46.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357168131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.861 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds