Wall clock time and date at job start Tue Mar 31 2020 22:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00342 * 2 1 4 4 C 1.52996 * 109.47248 * 270.00077 * 3 2 1 5 5 N 1.46499 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00549 * 270.27942 * 5 4 3 7 7 C 1.34776 * 119.99660 * 89.99916 * 5 4 3 8 8 O 1.21285 * 120.00267 * 354.91647 * 7 5 4 9 9 C 1.50707 * 119.99934 * 174.91666 * 7 5 4 10 10 C 1.53005 * 115.54962 * 193.25079 * 9 7 5 11 11 C 1.53003 * 117.49689 * 34.32725 * 10 9 7 12 12 C 1.53000 * 117.49695 * 325.67035 * 10 9 7 13 13 C 1.52995 * 117.49944 * 47.58007 * 9 7 5 14 14 C 1.52999 * 117.49765 * 338.91494 * 9 7 5 15 15 C 1.34781 * 119.99575 * 180.02562 * 2 1 3 16 16 O 1.21291 * 119.99485 * 179.97438 * 15 2 1 17 17 C 1.50695 * 120.00310 * 359.97438 * 15 2 1 18 18 S 1.81001 * 109.47060 * 180.02562 * 17 15 2 19 19 C 1.76205 * 99.99700 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00181 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99550 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99490 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00403 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46973 * 90.00381 * 23 21 19 25 25 H 1.48499 * 109.47042 * 210.00573 * 23 21 19 26 26 H 1.48499 * 109.46898 * 330.00516 * 23 21 19 27 27 H 1.09003 * 109.46724 * 89.99474 * 1 2 3 28 28 H 1.08990 * 109.47085 * 209.99481 * 1 2 3 29 29 H 1.09000 * 109.46446 * 329.99999 * 1 2 3 30 30 H 1.09003 * 109.46994 * 149.99860 * 3 2 1 31 31 H 1.08997 * 109.46769 * 30.00224 * 3 2 1 32 32 H 1.09003 * 109.47301 * 59.99970 * 4 3 2 33 33 H 1.08997 * 109.47355 * 299.99788 * 4 3 2 34 34 H 1.08997 * 109.46991 * 271.15266 * 6 5 4 35 35 H 1.09009 * 109.46897 * 31.14948 * 6 5 4 36 36 H 1.09001 * 109.47292 * 151.14411 * 6 5 4 37 37 H 1.08999 * 115.54584 * 179.97438 * 10 9 7 38 38 H 1.08997 * 117.49979 * 0.02562 * 11 10 9 39 39 H 1.09004 * 117.49329 * 145.01982 * 11 10 9 40 40 H 1.08999 * 117.49571 * 214.98088 * 12 10 9 41 41 H 1.08998 * 117.49806 * 359.97391 * 12 10 9 42 42 H 1.08999 * 117.50127 * 359.97438 * 13 9 7 43 43 H 1.08997 * 117.49850 * 145.02200 * 13 9 7 44 44 H 1.09001 * 117.49978 * 214.97854 * 14 9 7 45 45 H 1.08999 * 117.49915 * 359.97438 * 14 9 7 46 46 H 1.09002 * 109.46997 * 300.00066 * 17 15 2 47 47 H 1.08996 * 109.46961 * 60.00225 * 17 15 2 48 48 H 0.96998 * 119.99908 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 7 3.1846 2.9794 -1.4424 6 6 2.4518 4.2479 -1.4364 7 6 4.5324 2.9798 -1.4423 8 8 5.1392 1.9338 -1.3490 9 6 5.2855 4.2800 -1.5579 10 6 6.7792 4.1525 -1.8640 11 6 7.2193 2.9984 -2.7670 12 6 7.5229 2.9559 -1.2673 13 6 4.8455 5.4340 -0.6549 14 6 4.5418 5.4765 -2.1547 15 6 2.1388 -1.1673 -0.0005 16 8 3.3517 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0005 18 16 2.5615 -3.8481 -0.0005 19 6 1.4413 -5.2082 -0.0013 20 1 0.3760 -5.0305 -0.0012 21 6 1.9281 -6.5081 -0.0010 22 7 1.0912 -7.5242 -0.0010 23 14 3.7705 -6.8155 -0.0004 24 1 4.2584 -6.8969 1.3998 25 1 4.0594 -8.0930 -0.7003 26 1 4.4585 -5.7011 -0.7004 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3632 0.8900 0.5139 30 1 3.1500 1.1383 0.5139 31 1 1.6085 2.0283 0.5139 32 1 1.5002 1.8408 -1.9563 33 1 3.0417 0.9508 -1.9563 34 1 2.2480 4.5546 -2.4623 35 1 1.5106 4.1212 -0.9012 36 1 3.0514 5.0116 -0.9411 37 1 7.3238 5.0929 -1.9480 38 1 6.4446 2.3303 -3.1433 39 1 8.0538 3.1795 -3.4445 40 1 8.5570 3.1091 -0.9587 41 1 6.9482 2.2599 -0.6563 42 1 4.0110 5.2530 0.0225 43 1 5.6200 6.1026 -0.2792 44 1 5.1167 6.1731 -2.7650 45 1 3.5080 5.3231 -2.4641 46 1 0.7590 -2.5302 0.8897 47 1 0.7584 -2.5298 -0.8903 48 1 1.4313 -8.4326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357168131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:47 Heat of formation + Delta-G solvation = 14.709967 kcal Electronic energy + Delta-G solvation = -27693.347871 eV Core-core repulsion = 23877.943261 eV Total energy + Delta-G solvation = -3815.404610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05090 -40.88885 -38.40344 -37.89945 -36.81049 -35.36486 -34.69916 -32.14156 -29.92495 -28.32879 -27.88545 -27.53240 -25.42099 -24.46213 -23.71563 -22.98079 -22.34048 -20.77045 -20.13413 -19.59889 -18.17473 -17.78744 -17.29637 -17.07791 -17.03568 -16.84445 -16.47159 -16.18618 -15.78722 -15.55415 -15.01230 -14.93833 -14.74365 -14.58113 -14.41017 -14.27755 -14.05499 -13.65667 -13.42739 -13.38485 -13.31684 -13.17073 -13.04796 -12.70551 -12.44300 -12.40393 -12.16030 -12.04207 -11.89474 -11.85429 -11.72284 -11.20254 -11.02777 -10.96828 -10.54273 -10.50222 -10.40847 -10.10349 -9.45661 -9.04400 -8.54703 -6.25537 0.93699 1.27189 1.38962 1.44475 1.49777 1.51461 1.79253 2.21251 2.25369 2.62423 2.67053 2.83452 3.21972 3.35769 3.47659 3.54825 3.77945 3.95084 3.98079 4.00653 4.12308 4.13744 4.20396 4.24209 4.31541 4.31884 4.34568 4.41355 4.59155 4.66028 4.69846 4.72599 4.79033 4.83088 4.85978 4.90449 4.94990 5.01858 5.12144 5.18779 5.25278 5.35102 5.42952 5.59981 5.68439 6.08309 6.18035 6.36218 6.91081 7.07051 7.19792 8.57571 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002571 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.722853 B =10888.427808 C =12307.354819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.112 3.888 4 C 0.110 3.890 5 N -0.611 5.611 6 C 0.026 3.974 7 C 0.530 3.470 8 O -0.568 6.568 9 C -0.158 4.158 10 C -0.093 4.093 11 C -0.180 4.180 12 C -0.189 4.189 13 C -0.145 4.145 14 C -0.164 4.164 15 C 0.524 3.476 16 O -0.560 6.560 17 C -0.101 4.101 18 S -0.189 6.189 19 C -0.524 4.524 20 H 0.066 0.934 21 C 0.049 3.951 22 N -0.914 5.914 23 Si 0.910 3.090 24 H -0.262 1.262 25 H -0.256 1.256 26 H -0.244 1.244 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.146 0.854 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 36.467 -3.457 36.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.012 4.012 4 C -0.014 4.014 5 N -0.344 5.344 6 C -0.114 4.114 7 C 0.320 3.680 8 O -0.446 6.446 9 C -0.161 4.161 10 C -0.111 4.111 11 C -0.217 4.217 12 C -0.226 4.226 13 C -0.181 4.181 14 C -0.200 4.200 15 C 0.311 3.689 16 O -0.438 6.438 17 C -0.252 4.252 18 S 0.038 5.962 19 C -0.671 4.671 20 H 0.085 0.915 21 C -0.157 4.157 22 N -0.552 5.552 23 Si 0.733 3.267 24 H -0.187 1.187 25 H -0.180 1.180 26 H -0.168 1.168 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.164 0.836 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.646 35.740 -3.414 35.941 hybrid contribution -0.663 -1.537 -0.009 1.674 sum 0.983 34.203 -3.424 34.388 Atomic orbital electron populations 1.22202 0.76078 1.05216 1.03745 1.47763 1.08763 1.04236 1.73507 1.21781 0.97178 0.84820 0.97416 1.21669 0.97218 0.85515 0.97002 1.47786 1.05094 1.07867 1.73672 1.23433 0.99092 0.85001 1.03857 1.20351 0.82381 0.90213 0.75062 1.90748 1.68132 1.35521 1.50231 1.20901 0.94248 0.88540 1.12391 1.21568 0.91466 0.94186 1.03887 1.22846 1.03140 1.01949 0.93748 1.23115 1.00791 1.01866 0.96791 1.23485 1.03949 0.96619 0.94058 1.24380 1.04007 0.95659 0.95957 1.20218 0.87321 0.85719 0.75609 1.90756 1.15752 1.87405 1.49901 1.23259 1.01496 0.93177 1.07223 1.84924 1.14284 0.99453 1.97574 1.22408 0.94350 0.92222 1.58160 0.91548 1.25486 1.02395 0.94838 0.92977 1.70002 1.36550 0.99494 1.49145 0.85926 0.80630 0.79981 0.80199 1.18699 1.18016 1.16780 0.90709 0.90804 0.87306 0.93861 0.86215 0.87025 0.94524 0.90022 0.88937 0.86023 0.84328 0.91720 0.87593 0.88241 0.90087 0.85784 0.85948 0.86400 0.83648 0.86694 0.86845 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.29 127.77 1.31 2.37 16 2 N -0.61 -15.81 2.87 -846.76 -2.43 -18.24 16 3 C 0.11 2.59 5.77 86.38 0.50 3.09 16 4 C 0.11 2.44 5.70 86.38 0.49 2.93 16 5 N -0.61 -11.03 2.87 -846.75 -2.43 -13.46 16 6 C 0.03 0.15 8.51 127.77 1.09 1.24 16 7 C 0.53 13.32 7.05 87.66 0.62 13.94 16 8 O -0.57 -21.16 11.71 -3.05 -0.04 -21.20 16 9 C -0.16 -2.60 2.46 -52.93 -0.13 -2.73 16 10 C -0.09 -1.74 5.85 -10.79 -0.06 -1.80 16 11 C -0.18 -4.39 9.69 30.62 0.30 -4.09 16 12 C -0.19 -4.84 9.67 30.62 0.30 -4.54 16 13 C -0.14 -1.11 9.09 30.62 0.28 -0.83 16 14 C -0.16 -1.12 9.08 30.62 0.28 -0.85 16 15 C 0.52 20.16 7.69 87.65 0.67 20.83 16 16 O -0.56 -27.61 15.44 -3.06 -0.05 -27.66 16 17 C -0.10 -4.04 4.71 71.23 0.34 -3.71 16 18 S -0.19 -10.16 18.55 -56.49 -1.05 -11.21 16 19 C -0.52 -31.31 10.04 67.95 0.68 -30.63 16 20 H 0.07 4.12 8.03 -2.91 -0.02 4.10 16 21 C 0.05 2.93 5.50 84.86 0.47 3.40 16 22 N -0.91 -56.49 13.97 21.65 0.30 -56.19 16 23 Si 0.91 46.95 27.74 68.60 1.90 48.85 16 24 H -0.26 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.24 -12.84 6.74 99.48 0.67 -12.17 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.24 6.44 -2.39 -0.02 1.22 16 29 H 0.11 0.86 7.89 -2.39 -0.02 0.84 16 30 H 0.04 1.43 7.42 -2.39 -0.02 1.41 16 31 H 0.12 1.63 7.89 -2.39 -0.02 1.61 16 32 H 0.11 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.04 1.22 7.50 -2.39 -0.02 1.20 16 34 H 0.08 0.24 6.69 -2.39 -0.02 0.22 16 35 H 0.09 0.16 8.08 -2.38 -0.02 0.14 16 36 H 0.12 0.39 2.41 -2.39 -0.01 0.39 16 37 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 2.02 6.73 -2.39 -0.02 2.00 16 39 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.77 5.84 -2.39 -0.01 2.76 16 42 H 0.12 0.65 6.15 -2.39 -0.01 0.64 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.15 0.54 3.77 -2.39 -0.01 0.53 16 46 H 0.11 4.17 7.40 -2.39 -0.02 4.15 16 47 H 0.11 4.15 8.11 -2.40 -0.02 4.13 16 48 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -91.03 390.78 4.27 -86.76 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.72 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 7.12 Total: -1.38 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -4.56 Total: -87.90 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.08 Total: -48.86 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.90 Total: 48.85 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -1.05 Total: -11.21 kcal Total: -91.03 4.27 -86.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357168131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.475 kcal (2) G-P(sol) polarization free energy of solvation -91.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds