Wall clock time and date at job start Tue Mar 31 2020 22:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.53000 * 109.47087 * 270.00601 * 3 2 1 5 5 H 1.08994 * 109.47275 * 59.99839 * 4 3 2 6 6 O 1.42897 * 109.47002 * 299.99619 * 4 3 2 7 7 C 1.50701 * 109.46951 * 180.02562 * 4 3 2 8 8 C 1.38671 * 120.41510 * 264.99993 * 7 4 3 9 9 C 1.38635 * 118.41757 * 179.97438 * 8 7 4 10 10 C 1.38226 * 119.16271 * 0.02562 * 9 8 7 11 11 N 1.31854 * 120.76302 * 359.97438 * 10 9 8 12 12 C 1.31889 * 121.72479 * 359.70456 * 11 10 9 13 13 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 14 14 O 1.21280 * 119.99871 * 179.97438 * 13 2 1 15 15 C 1.50701 * 119.99906 * 359.97438 * 13 2 1 16 16 C 1.50700 * 109.46813 * 180.02562 * 15 13 2 17 17 C 1.37640 * 120.13180 * 265.30632 * 16 15 13 18 18 C 1.38613 * 120.24862 * 180.32332 * 17 16 15 19 19 C 1.38655 * 120.50174 * 359.67182 * 18 17 16 20 20 C 1.37598 * 120.24576 * 359.97438 * 19 18 17 21 21 C 1.40702 * 120.12495 * 85.00356 * 16 15 13 22 22 C 1.41393 * 120.24620 * 359.97406 * 21 16 15 23 23 H 1.07999 * 119.99787 * 29.07372 * 22 21 16 24 24 C 1.39938 * 120.00244 * 209.07592 * 22 21 16 25 25 N 1.30823 * 120.00241 * 197.10039 * 24 22 21 26 26 Si 1.86803 * 119.99882 * 17.09514 * 24 22 21 27 27 H 1.48495 * 109.47432 * 270.00073 * 26 24 22 28 28 H 1.48498 * 109.46929 * 30.00589 * 26 24 22 29 29 H 1.48504 * 109.46998 * 150.00206 * 26 24 22 30 30 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 31 31 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 32 32 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 33 33 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 34 34 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 35 35 H 0.96705 * 114.00465 * 300.00144 * 6 4 3 36 36 H 1.07995 * 120.79347 * 359.97438 * 8 7 4 37 37 H 1.08005 * 120.41755 * 180.02562 * 9 8 7 38 38 H 1.07996 * 119.61628 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.61747 * 180.30803 * 12 11 10 40 40 H 1.08999 * 109.47299 * 60.00523 * 15 13 2 41 41 H 1.08998 * 109.47401 * 299.99992 * 15 13 2 42 42 H 1.08005 * 119.87130 * 0.02562 * 17 16 15 43 43 H 1.08001 * 119.74473 * 179.69460 * 18 17 16 44 44 H 1.08002 * 119.87493 * 180.02562 * 19 18 17 45 45 H 1.08003 * 120.12022 * 180.02562 * 20 19 18 46 46 H 0.97004 * 119.99819 * 355.45620 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9562 6 8 3.2247 0.7145 -2.1162 7 6 3.2066 3.0151 -1.4425 8 6 2.5265 4.2191 -1.5464 9 6 3.2615 5.3946 -1.5416 10 6 4.6380 5.3279 -1.4347 11 7 5.2513 4.1647 -1.3377 12 6 4.5840 3.0271 -1.3326 13 6 2.1388 -1.1673 -0.0005 14 8 3.3516 -1.1674 -0.0010 15 6 1.3852 -2.4724 -0.0005 16 6 2.3645 -3.6178 -0.0005 17 6 2.7394 -4.2063 -1.1869 18 6 3.6348 -5.2644 -1.1892 19 6 4.1679 -5.7378 0.0000 20 6 3.8129 -5.1600 1.1973 21 6 2.9039 -4.0857 1.2118 22 6 2.5314 -3.4845 2.4362 23 1 1.5566 -3.0316 2.5408 24 6 3.4259 -3.4762 3.5123 25 7 2.9912 -3.2352 4.7224 26 14 5.2408 -3.8095 3.2209 27 1 5.5014 -5.2667 3.3373 28 1 5.6169 -3.3463 1.8611 29 1 6.0467 -3.0801 4.2328 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8901 -0.5137 32 1 -0.3635 -0.8899 -0.5138 33 1 1.6086 2.0283 0.5139 34 1 3.1500 1.1382 0.5137 35 1 4.0872 0.5459 -1.7128 36 1 1.4500 4.2406 -1.6291 37 1 2.7648 6.3504 -1.6204 38 1 5.2178 6.2390 -1.4307 39 1 5.1207 2.0938 -1.2465 40 1 0.7583 -2.5299 -0.8903 41 1 0.7589 -2.5303 0.8897 42 1 2.3307 -3.8453 -2.1192 43 1 3.9196 -5.7234 -2.1245 44 1 4.8651 -6.5625 -0.0136 45 1 4.2297 -5.5300 2.1223 46 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363887257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:23 Heat of formation + Delta-G solvation = -28.931538 kcal Electronic energy + Delta-G solvation = -29519.255151 eV Core-core repulsion = 25566.514151 eV Total energy + Delta-G solvation = -3952.740999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.65393 -39.51915 -37.85717 -36.93836 -34.90056 -33.62296 -33.01810 -31.96057 -31.62144 -30.11280 -29.14518 -26.94214 -26.31606 -24.64925 -23.89199 -23.78794 -21.76817 -21.29818 -19.99726 -18.68237 -18.03482 -17.80685 -16.90129 -16.74292 -16.32660 -15.95999 -15.65015 -15.09373 -14.81327 -14.43499 -14.40776 -14.16125 -13.96063 -13.61393 -13.55125 -13.35540 -12.99436 -12.74121 -12.48368 -12.41690 -12.31496 -12.07540 -11.91946 -11.67385 -11.59532 -11.22386 -11.19045 -10.75064 -10.49246 -10.24915 -10.10069 -10.08975 -9.67031 -9.66007 -9.32097 -9.22428 -9.13164 -8.92400 -8.30807 -7.61280 -7.53392 -7.13985 -4.45718 0.80610 0.99420 2.62661 2.80165 3.25622 3.29120 3.34557 3.47800 3.55619 3.69692 4.13063 4.15345 4.33430 4.52709 4.54043 4.64515 4.66656 4.75119 4.88743 4.99815 5.13064 5.19565 5.31729 5.40172 5.45984 5.52114 5.63798 5.70352 5.75332 5.80642 5.88168 5.95100 6.06531 6.13631 6.25214 6.26627 6.39940 6.58192 6.72019 6.80494 7.11341 7.40127 7.55212 7.61847 7.70631 7.72443 7.74283 7.80709 7.90610 8.06470 8.44814 8.65168 8.83339 8.85958 10.11515 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.003302 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.739844 B = 8478.110394 C = 8872.508019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.625 5.625 3 C 0.091 3.909 4 C 0.139 3.861 5 H 0.105 0.895 6 O -0.543 6.543 7 C -0.164 4.164 8 C -0.067 4.067 9 C -0.173 4.173 10 C 0.094 3.906 11 N -0.480 5.480 12 C 0.112 3.888 13 C 0.530 3.470 14 O -0.514 6.514 15 C -0.068 4.068 16 C -0.170 4.170 17 C -0.066 4.066 18 C -0.244 4.244 19 C -0.076 4.076 20 C -0.245 4.245 21 C 0.115 3.885 22 C -0.513 4.513 23 H 0.073 0.927 24 C 0.047 3.953 25 N -0.825 5.825 26 Si 1.070 2.930 27 H -0.280 1.280 28 H -0.258 1.258 29 H -0.294 1.294 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.382 0.618 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 14.770 -9.939 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.361 5.361 3 C -0.033 4.033 4 C 0.077 3.923 5 H 0.123 0.877 6 O -0.350 6.350 7 C -0.167 4.167 8 C -0.093 4.093 9 C -0.193 4.193 10 C -0.063 4.063 11 N -0.188 5.188 12 C -0.045 4.045 13 C 0.319 3.681 14 O -0.387 6.387 15 C -0.107 4.107 16 C -0.171 4.171 17 C -0.085 4.085 18 C -0.264 4.264 19 C -0.095 4.095 20 C -0.264 4.264 21 C 0.112 3.888 22 C -0.542 4.542 23 H 0.091 0.909 24 C -0.171 4.171 25 N -0.448 5.448 26 Si 0.897 3.103 27 H -0.207 1.207 28 H -0.182 1.182 29 H -0.221 1.221 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.926 14.567 -9.382 17.572 hybrid contribution -2.283 0.471 -0.333 2.355 sum -5.210 15.039 -9.714 18.646 Atomic orbital electron populations 1.21723 0.80075 1.02706 1.01611 1.47811 1.06413 1.05439 1.76475 1.22016 0.99284 0.86344 0.95686 1.21150 0.93934 0.83254 0.93961 0.87712 1.86594 1.34057 1.58333 1.56001 1.21630 0.96236 0.96980 1.01864 1.21431 1.00523 0.91662 0.95733 1.22139 0.95716 0.99224 1.02197 1.22829 0.92276 0.96094 0.95069 1.67735 1.40936 0.98478 1.11676 1.22599 0.90968 0.96737 0.94180 1.20915 0.88336 0.84566 0.74262 1.90612 1.14088 1.86751 1.47223 1.20278 0.97594 0.90591 1.02275 1.19031 1.05667 0.99284 0.93168 1.20424 0.96814 0.95592 0.95643 1.20330 1.06348 1.03337 0.96344 1.20602 0.97787 0.97966 0.93114 1.21118 1.07482 1.01050 0.96734 1.17502 0.89358 0.89538 0.92360 1.20498 1.02415 1.34596 0.96678 0.90884 1.27138 1.07427 0.91300 0.91228 1.70576 1.20072 1.32170 1.21973 0.83642 0.72703 0.76722 0.77208 1.20688 1.18174 1.22143 0.92836 0.91846 0.90802 0.90228 0.89347 0.76814 0.84733 0.84682 0.82747 0.82713 0.90582 0.89163 0.89191 0.89042 0.88932 0.87851 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.24 59.85 0.61 1.49 16 2 N -0.63 -9.16 2.83 -181.57 -0.51 -9.67 16 3 C 0.09 1.15 5.13 -4.04 -0.02 1.13 16 4 C 0.14 1.59 3.50 -27.88 -0.10 1.49 16 5 H 0.11 1.07 8.06 -51.93 -0.42 0.65 16 6 O -0.54 -7.87 11.95 -44.02 -0.53 -8.40 16 7 C -0.16 -1.75 5.02 -104.48 -0.52 -2.27 16 8 C -0.07 -0.58 9.84 -39.27 -0.39 -0.96 16 9 C -0.17 -1.38 10.11 -39.44 -0.40 -1.77 16 10 C 0.09 0.90 11.18 -17.55 -0.20 0.70 16 11 N -0.48 -5.94 10.36 -13.25 -0.14 -6.08 16 12 C 0.11 1.35 10.49 -17.55 -0.18 1.16 16 13 C 0.53 10.21 7.18 -10.98 -0.08 10.13 16 14 O -0.51 -11.75 14.40 -3.23 -0.05 -11.79 16 15 C -0.07 -1.30 3.91 -29.03 -0.11 -1.42 16 16 C -0.17 -3.93 4.43 -103.91 -0.46 -4.39 16 17 C -0.07 -1.45 9.66 -39.66 -0.38 -1.84 16 18 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 19 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 20 C -0.24 -6.14 7.26 -38.87 -0.28 -6.42 16 21 C 0.12 2.97 5.13 -106.83 -0.55 2.42 16 22 C -0.51 -13.72 8.80 -37.75 -0.33 -14.05 16 23 H 0.07 1.96 6.60 -52.49 -0.35 1.62 16 24 C 0.05 1.28 5.42 -17.34 -0.09 1.19 16 25 N -0.82 -22.60 13.65 55.55 0.76 -21.84 16 26 Si 1.07 26.10 24.89 -169.99 -4.23 21.87 16 27 H -0.28 -6.43 6.45 56.52 0.36 -6.06 16 28 H -0.26 -6.51 7.01 56.52 0.40 -6.11 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.07 0.75 6.44 -51.93 -0.33 0.42 16 33 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.09 1.33 7.42 -51.93 -0.39 0.95 16 35 H 0.38 5.41 6.82 45.56 0.31 5.72 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.16 1.79 6.64 -52.49 -0.35 1.44 16 40 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 41 H 0.09 1.74 6.48 -51.93 -0.34 1.40 16 42 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.10 2.58 4.43 -52.48 -0.23 2.35 16 46 H 0.28 7.46 8.73 -40.82 -0.36 7.11 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -33.12 377.61 -8.75 -41.86 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.46 Total: 9.61 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -4.28 Total: -21.25 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.11 Total: -37.59 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.57 Total: -20.19 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -4.23 Total: 21.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.12 -8.75 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363887257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.933 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds