Wall clock time and date at job start Tue Mar 31 2020 22:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.53000 * 109.47087 * 270.00601 * 3 2 1 5 5 H 1.08994 * 109.47275 * 59.99839 * 4 3 2 6 6 O 1.42897 * 109.47002 * 299.99619 * 4 3 2 7 7 C 1.50701 * 109.46951 * 180.02562 * 4 3 2 8 8 C 1.38671 * 120.41510 * 264.99993 * 7 4 3 9 9 C 1.38635 * 118.41757 * 179.97438 * 8 7 4 10 10 C 1.38226 * 119.16271 * 0.02562 * 9 8 7 11 11 N 1.31854 * 120.76302 * 359.97438 * 10 9 8 12 12 C 1.31889 * 121.72479 * 359.70456 * 11 10 9 13 13 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 14 14 O 1.21280 * 119.99871 * 179.97438 * 13 2 1 15 15 C 1.50701 * 119.99906 * 359.97438 * 13 2 1 16 16 C 1.50700 * 109.46813 * 180.02562 * 15 13 2 17 17 C 1.37640 * 120.13180 * 265.30632 * 16 15 13 18 18 C 1.38613 * 120.24862 * 180.32332 * 17 16 15 19 19 C 1.38655 * 120.50174 * 359.67182 * 18 17 16 20 20 C 1.37598 * 120.24576 * 359.97438 * 19 18 17 21 21 C 1.40702 * 120.12495 * 85.00356 * 16 15 13 22 22 C 1.41393 * 120.24620 * 359.97406 * 21 16 15 23 23 H 1.07999 * 119.99787 * 29.07372 * 22 21 16 24 24 C 1.39938 * 120.00244 * 209.07592 * 22 21 16 25 25 N 1.30823 * 120.00241 * 197.10039 * 24 22 21 26 26 Si 1.86803 * 119.99882 * 17.09514 * 24 22 21 27 27 H 1.48495 * 109.47432 * 270.00073 * 26 24 22 28 28 H 1.48498 * 109.46929 * 30.00589 * 26 24 22 29 29 H 1.48504 * 109.46998 * 150.00206 * 26 24 22 30 30 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 31 31 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 32 32 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 33 33 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 34 34 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 35 35 H 0.96705 * 114.00465 * 300.00144 * 6 4 3 36 36 H 1.07995 * 120.79347 * 359.97438 * 8 7 4 37 37 H 1.08005 * 120.41755 * 180.02562 * 9 8 7 38 38 H 1.07996 * 119.61628 * 179.97438 * 10 9 8 39 39 H 1.08002 * 119.61747 * 180.30803 * 12 11 10 40 40 H 1.08999 * 109.47299 * 60.00523 * 15 13 2 41 41 H 1.08998 * 109.47401 * 299.99992 * 15 13 2 42 42 H 1.08005 * 119.87130 * 0.02562 * 17 16 15 43 43 H 1.08001 * 119.74473 * 179.69460 * 18 17 16 44 44 H 1.08002 * 119.87493 * 180.02562 * 19 18 17 45 45 H 1.08003 * 120.12022 * 180.02562 * 20 19 18 46 46 H 0.97004 * 119.99819 * 355.45620 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9562 6 8 3.2247 0.7145 -2.1162 7 6 3.2066 3.0151 -1.4425 8 6 2.5265 4.2191 -1.5464 9 6 3.2615 5.3946 -1.5416 10 6 4.6380 5.3279 -1.4347 11 7 5.2513 4.1647 -1.3377 12 6 4.5840 3.0271 -1.3326 13 6 2.1388 -1.1673 -0.0005 14 8 3.3516 -1.1674 -0.0010 15 6 1.3852 -2.4724 -0.0005 16 6 2.3645 -3.6178 -0.0005 17 6 2.7394 -4.2063 -1.1869 18 6 3.6348 -5.2644 -1.1892 19 6 4.1679 -5.7378 0.0000 20 6 3.8129 -5.1600 1.1973 21 6 2.9039 -4.0857 1.2118 22 6 2.5314 -3.4845 2.4362 23 1 1.5566 -3.0316 2.5408 24 6 3.4259 -3.4762 3.5123 25 7 2.9912 -3.2352 4.7224 26 14 5.2408 -3.8095 3.2209 27 1 5.5014 -5.2667 3.3373 28 1 5.6169 -3.3463 1.8611 29 1 6.0467 -3.0801 4.2328 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8901 -0.5137 32 1 -0.3635 -0.8899 -0.5138 33 1 1.6086 2.0283 0.5139 34 1 3.1500 1.1382 0.5137 35 1 4.0872 0.5459 -1.7128 36 1 1.4500 4.2406 -1.6291 37 1 2.7648 6.3504 -1.6204 38 1 5.2178 6.2390 -1.4307 39 1 5.1207 2.0938 -1.2465 40 1 0.7583 -2.5299 -0.8903 41 1 0.7589 -2.5303 0.8897 42 1 2.3307 -3.8453 -2.1192 43 1 3.9196 -5.7234 -2.1245 44 1 4.8651 -6.5625 -0.0136 45 1 4.2297 -5.5300 2.1223 46 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363887257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:22 Heat of formation + Delta-G solvation = -50.735643 kcal Electronic energy + Delta-G solvation = -29520.200647 eV Core-core repulsion = 25566.514151 eV Total energy + Delta-G solvation = -3953.686496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.51303 -40.82751 -39.47346 -38.12080 -36.15067 -35.58661 -33.86259 -33.50901 -32.45536 -31.99366 -30.23644 -28.40459 -27.35438 -26.41684 -24.98277 -24.55383 -23.21179 -22.59952 -21.62795 -20.18726 -19.88544 -18.68237 -18.03593 -17.65990 -17.33099 -17.25938 -17.05623 -16.43619 -16.28716 -15.95173 -15.48766 -15.36442 -15.33036 -14.97370 -14.70972 -14.45914 -14.17954 -14.01035 -13.94532 -13.80674 -13.64770 -13.31471 -13.16962 -13.01987 -12.79533 -12.70577 -12.60802 -12.52674 -12.13704 -11.92380 -11.58147 -11.48405 -11.12521 -10.85495 -10.83181 -10.67403 -10.42017 -10.09203 -9.55033 -9.45080 -9.32096 -9.13571 -6.47052 0.06278 0.29400 0.83343 0.91867 1.31742 1.51631 1.73014 1.89093 2.13077 2.16453 2.71163 2.78326 3.34593 3.45317 3.50834 3.71303 3.80639 3.90698 3.95893 4.06832 4.11571 4.16623 4.23542 4.32663 4.38215 4.47699 4.51395 4.54881 4.59046 4.67415 4.74635 4.75684 4.85565 4.91239 4.95538 5.00504 5.13943 5.25585 5.26635 5.52127 5.61049 5.63346 5.72013 5.84811 5.91161 6.04750 6.20592 6.44528 6.50966 6.57849 6.75805 6.90105 6.96957 7.43305 8.08346 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.003302 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.739844 B = 8478.110394 C = 8872.508019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.619 5.619 3 C 0.090 3.910 4 C 0.148 3.852 5 H 0.129 0.871 6 O -0.563 6.563 7 C -0.171 4.171 8 C -0.064 4.064 9 C -0.163 4.163 10 C 0.081 3.919 11 N -0.515 5.515 12 C 0.086 3.914 13 C 0.523 3.477 14 O -0.563 6.563 15 C -0.068 4.068 16 C -0.171 4.171 17 C -0.079 4.079 18 C -0.231 4.231 19 C -0.089 4.089 20 C -0.266 4.266 21 C 0.086 3.914 22 C -0.531 4.531 23 H 0.058 0.942 24 C 0.016 3.984 25 N -0.854 5.854 26 Si 1.097 2.903 27 H -0.259 1.259 28 H -0.277 1.277 29 H -0.288 1.288 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.378 0.622 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.140 0.860 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 16.206 -12.567 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.353 5.353 3 C -0.033 4.033 4 C 0.087 3.913 5 H 0.146 0.854 6 O -0.370 6.370 7 C -0.174 4.174 8 C -0.090 4.090 9 C -0.182 4.182 10 C -0.075 4.075 11 N -0.224 5.224 12 C -0.070 4.070 13 C 0.313 3.687 14 O -0.440 6.440 15 C -0.107 4.107 16 C -0.173 4.173 17 C -0.097 4.097 18 C -0.249 4.249 19 C -0.107 4.107 20 C -0.285 4.285 21 C 0.084 3.916 22 C -0.561 4.561 23 H 0.076 0.924 24 C -0.197 4.197 25 N -0.480 5.480 26 Si 0.922 3.078 27 H -0.185 1.185 28 H -0.202 1.202 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.187 0.813 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.158 0.842 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.115 0.885 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.699 16.013 -12.008 20.560 hybrid contribution -1.819 0.089 0.232 1.836 sum -6.518 16.102 -11.776 20.987 Atomic orbital electron populations 1.22049 0.77287 1.05074 1.02548 1.47806 1.08177 1.04758 1.74548 1.22140 0.98170 0.86075 0.96937 1.21194 0.94439 0.82934 0.92765 0.85398 1.86541 1.34142 1.59548 1.56722 1.21527 0.95508 0.97531 1.02789 1.21856 1.02236 0.90720 0.94178 1.22548 0.94967 1.00676 1.00031 1.23373 0.93769 0.95910 0.94491 1.67683 1.42222 0.99427 1.13112 1.22528 0.92014 0.96508 0.95944 1.20890 0.87804 0.85841 0.74204 1.90595 1.15994 1.87602 1.49859 1.20302 0.97064 0.89719 1.03644 1.19509 1.05180 0.99780 0.92806 1.20854 0.96854 0.95555 0.96405 1.20869 1.04425 1.02207 0.97439 1.20985 0.98351 0.98751 0.92575 1.21293 1.07931 1.01528 0.97715 1.17773 0.90571 0.90243 0.93053 1.20437 1.02057 1.35936 0.97671 0.92414 1.27795 1.09338 0.91315 0.91273 1.70615 1.19832 1.35233 1.22305 0.83258 0.70740 0.77842 0.75967 1.18464 1.20235 1.21577 0.92622 0.87886 0.90120 0.87095 0.92716 0.77260 0.81304 0.80963 0.80432 0.84242 0.87041 0.89748 0.86108 0.85523 0.85879 0.88527 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.33 10.24 127.77 1.31 2.64 16 2 N -0.62 -17.41 2.83 -846.75 -2.39 -19.80 16 3 C 0.09 2.21 5.13 86.38 0.44 2.66 16 4 C 0.15 3.16 3.50 29.85 0.10 3.27 16 5 H 0.13 2.13 8.06 -2.39 -0.02 2.11 16 6 O -0.56 -16.39 11.95 -140.57 -1.68 -18.07 16 7 C -0.17 -3.43 5.02 -19.77 -0.10 -3.53 16 8 C -0.06 -0.88 9.84 22.47 0.22 -0.66 16 9 C -0.16 -2.03 10.11 22.36 0.23 -1.80 16 10 C 0.08 1.42 11.18 84.69 0.95 2.36 16 11 N -0.52 -12.91 10.36 -195.84 -2.03 -14.94 16 12 C 0.09 2.15 10.49 84.67 0.89 3.04 16 13 C 0.52 20.21 7.18 87.66 0.63 20.84 16 14 O -0.56 -26.67 14.40 5.38 0.08 -26.59 16 15 C -0.07 -2.56 3.91 29.10 0.11 -2.45 16 16 C -0.17 -7.85 4.43 -19.40 -0.09 -7.93 16 17 C -0.08 -3.26 9.66 22.22 0.21 -3.04 16 18 C -0.23 -9.35 10.05 22.46 0.23 -9.12 16 19 C -0.09 -3.86 10.02 22.22 0.22 -3.64 16 20 C -0.27 -13.35 7.26 22.73 0.16 -13.18 16 21 C 0.09 4.51 5.13 -21.29 -0.11 4.40 16 22 C -0.53 -29.63 8.80 23.46 0.21 -29.43 16 23 H 0.06 3.28 6.60 -2.91 -0.02 3.26 16 24 C 0.02 0.88 5.42 85.26 0.46 1.35 16 25 N -0.85 -48.94 13.65 21.82 0.30 -48.64 16 26 Si 1.10 54.64 24.89 68.60 1.71 56.35 16 27 H -0.26 -11.82 6.45 99.48 0.64 -11.18 16 28 H -0.28 -14.50 7.01 99.48 0.70 -13.80 16 29 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 1.11 8.07 -2.39 -0.02 1.09 16 32 H 0.08 1.39 6.44 -2.39 -0.02 1.38 16 33 H 0.11 1.99 8.07 -2.39 -0.02 1.97 16 34 H 0.05 1.74 7.42 -2.39 -0.02 1.72 16 35 H 0.38 11.53 6.82 -74.05 -0.51 11.02 16 36 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.14 3.66 6.64 -2.91 -0.02 3.65 16 40 H 0.11 3.31 7.31 -2.39 -0.02 3.30 16 41 H 0.08 3.28 6.48 -2.39 -0.02 3.26 16 42 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 45 H 0.10 4.89 4.43 -2.91 -0.01 4.87 16 46 H 0.28 15.47 8.73 -92.71 -0.81 14.66 16 Total: -1.00 -76.38 377.61 2.46 -73.92 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.40 Total: 32.00 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 6.08 Total: -34.23 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -4.13 Total: -83.39 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.60 Total: -44.66 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 1.71 Total: 56.35 kcal Total: -76.38 2.46 -73.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363887257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.187 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds