Wall clock time and date at job start Tue Mar 31 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99930 * 2 1 4 4 C 1.53000 * 109.47069 * 269.99836 * 3 2 1 5 5 H 1.09005 * 109.46873 * 60.00097 * 4 3 2 6 6 O 1.42905 * 109.47362 * 300.00349 * 4 3 2 7 7 C 1.50691 * 109.47130 * 179.97438 * 4 3 2 8 8 C 1.38670 * 120.41926 * 264.99827 * 7 4 3 9 9 C 1.38635 * 118.42274 * 179.97438 * 8 7 4 10 10 C 1.38222 * 119.16012 * 0.02562 * 9 8 7 11 11 N 1.31858 * 120.76580 * 359.97438 * 10 9 8 12 12 C 1.31897 * 121.72205 * 359.70559 * 11 10 9 13 13 C 1.34771 * 120.00199 * 180.02562 * 2 1 3 14 14 O 1.21280 * 120.00181 * 184.14096 * 13 2 1 15 15 C 1.50698 * 120.00035 * 4.13203 * 13 2 1 16 16 H 1.08996 * 109.47496 * 324.74339 * 15 13 2 17 17 C 1.50701 * 109.46880 * 84.74103 * 15 13 2 18 18 H 1.08001 * 120.00494 * 26.30091 * 17 15 13 19 19 C 1.37877 * 120.00151 * 206.29718 * 17 15 13 20 20 N 1.31513 * 120.00062 * 354.81117 * 19 17 15 21 21 Si 1.86802 * 120.00060 * 174.81143 * 19 17 15 22 22 H 1.48498 * 109.47248 * 90.00436 * 21 19 17 23 23 H 1.48503 * 109.47140 * 210.00044 * 21 19 17 24 24 H 1.48493 * 109.46996 * 329.99793 * 21 19 17 25 25 C 1.50704 * 109.47570 * 204.74056 * 15 13 2 26 26 C 1.38228 * 119.99910 * 291.81297 * 25 15 13 27 27 C 1.38236 * 120.00065 * 179.80351 * 26 25 15 28 28 C 1.38241 * 119.99732 * 0.40482 * 27 26 25 29 29 C 1.38239 * 119.99808 * 359.84985 * 28 27 26 30 30 C 1.38231 * 119.99713 * 112.08635 * 25 15 13 31 31 H 1.08996 * 109.46613 * 271.70000 * 1 2 3 32 32 H 1.08998 * 109.46665 * 31.69808 * 1 2 3 33 33 H 1.09000 * 109.46712 * 151.69775 * 1 2 3 34 34 H 1.08989 * 109.47157 * 30.00009 * 3 2 1 35 35 H 1.08996 * 109.47077 * 150.00162 * 3 2 1 36 36 H 0.96699 * 113.99482 * 299.99846 * 6 4 3 37 37 H 1.08002 * 120.79165 * 359.97438 * 8 7 4 38 38 H 1.07997 * 120.41810 * 180.02562 * 9 8 7 39 39 H 1.08002 * 119.62105 * 179.97438 * 10 9 8 40 40 H 1.07999 * 119.61784 * 180.31445 * 12 11 10 41 41 H 0.97004 * 120.00194 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00228 * 359.97438 * 26 25 15 43 43 H 1.08000 * 120.00374 * 180.22875 * 27 26 25 44 44 H 1.07998 * 120.00005 * 179.83025 * 28 27 26 45 45 H 1.08001 * 119.99724 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00435 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7145 -2.1162 7 6 3.2055 3.0158 -1.4425 8 6 2.5243 4.2192 -1.5470 9 6 3.2582 5.3953 -1.5422 10 6 4.6347 5.3299 -1.4348 11 7 5.2491 4.1673 -1.3372 12 6 4.5828 3.0290 -1.3322 13 6 2.1389 -1.1671 -0.0005 14 8 3.3493 -1.1685 0.0753 15 6 1.3884 -2.4705 -0.0951 16 1 0.4447 -2.3863 0.4436 17 6 1.1139 -2.7881 -1.5425 18 1 1.7637 -2.4005 -2.3132 19 6 0.0332 -3.5737 -1.8830 20 7 -0.6981 -4.1297 -0.9419 21 14 -0.3923 -3.8484 -3.6810 22 1 0.3228 -5.0500 -4.1810 23 1 -1.8570 -4.0515 -3.8177 24 1 0.0189 -2.6620 -4.4738 25 6 2.2172 -3.5728 0.5126 26 6 3.3840 -3.9813 -0.1057 27 6 4.1463 -4.9896 0.4538 28 6 3.7374 -5.5951 1.6274 29 6 2.5677 -5.1901 2.2429 30 6 1.8075 -4.1791 1.6853 31 1 -0.3632 0.0305 1.0272 32 1 -0.3632 0.8744 -0.5400 33 1 -0.3633 -0.9048 -0.4873 34 1 1.6085 2.0284 0.5138 35 1 3.1499 1.1385 0.5138 36 1 4.0873 0.5461 -1.7127 37 1 1.4477 4.2397 -1.6301 38 1 2.7607 6.3506 -1.6215 39 1 5.2138 6.2415 -1.4308 40 1 5.1203 2.0963 -1.2455 41 1 -1.4587 -4.6820 -1.1814 42 1 3.7015 -3.5109 -1.0246 43 1 5.0599 -5.3063 -0.0273 44 1 4.3315 -6.3847 2.0631 45 1 2.2480 -5.6634 3.1595 46 1 0.8938 -3.8627 2.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420513236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:37 Heat of formation + Delta-G solvation = -20.745541 kcal Electronic energy + Delta-G solvation = -29688.807952 eV Core-core repulsion = 25736.421925 eV Total energy + Delta-G solvation = -3952.386028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.53172 -39.36698 -37.97326 -36.81717 -34.58241 -33.59576 -32.87676 -31.58615 -31.03306 -29.86634 -28.94595 -27.18832 -26.01661 -24.46959 -23.73289 -23.30458 -21.62425 -21.50023 -20.52102 -18.52246 -17.65995 -16.75322 -16.64184 -16.55350 -16.07040 -15.80809 -15.52221 -15.11912 -14.48385 -14.43188 -14.20226 -14.08021 -13.86906 -13.64654 -13.32028 -13.25112 -12.78082 -12.50540 -12.29982 -12.26768 -12.14105 -11.86646 -11.69897 -11.52215 -11.44485 -11.23363 -10.99985 -10.93161 -10.32853 -10.28168 -10.18559 -9.98324 -9.95578 -9.57665 -9.37891 -9.20047 -8.70907 -8.57201 -7.97775 -7.87376 -7.54135 -6.21941 -4.26641 0.90219 1.08571 2.43103 2.46971 3.23083 3.30676 3.34638 3.51108 3.68017 3.76163 4.24853 4.34244 4.50503 4.64715 4.68606 4.78439 4.88154 4.90680 5.09103 5.14691 5.23246 5.32742 5.49972 5.63667 5.68145 5.76763 5.79486 5.85416 5.90009 5.94472 6.03852 6.09263 6.26172 6.31719 6.45000 6.48977 6.55970 6.67563 6.87216 7.00988 7.12188 7.20760 7.43101 7.52696 7.71599 7.78527 7.82666 7.85597 8.02202 8.03393 8.24075 8.77859 9.15865 9.38060 10.86005 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003582 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.962955 B = 7815.667956 C = 9037.114565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.091 3.909 4 C 0.137 3.863 5 H 0.107 0.893 6 O -0.535 6.535 7 C -0.160 4.160 8 C -0.068 4.068 9 C -0.173 4.173 10 C 0.091 3.909 11 N -0.482 5.482 12 C 0.110 3.890 13 C 0.541 3.459 14 O -0.560 6.560 15 C 0.058 3.942 16 H 0.075 0.925 17 C -0.503 4.503 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.878 5.878 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.015 4.015 26 C -0.075 4.075 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.136 4.136 30 C -0.116 4.116 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.376 0.624 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.265 0.735 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 13.739 2.436 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.348 5.348 3 C -0.034 4.034 4 C 0.075 3.925 5 H 0.125 0.875 6 O -0.341 6.341 7 C -0.163 4.163 8 C -0.094 4.094 9 C -0.192 4.192 10 C -0.066 4.066 11 N -0.190 5.190 12 C -0.047 4.047 13 C 0.333 3.667 14 O -0.438 6.438 15 C 0.037 3.963 16 H 0.093 0.907 17 C -0.541 4.541 18 H 0.083 0.917 19 C -0.132 4.132 20 N -0.514 5.514 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.016 4.016 26 C -0.093 4.093 27 C -0.157 4.157 28 C -0.166 4.166 29 C -0.154 4.154 30 C -0.135 4.135 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.225 0.775 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.075 0.925 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.245 13.568 2.200 14.123 hybrid contribution -0.990 -0.104 -0.716 1.226 sum 2.255 13.465 1.483 13.733 Atomic orbital electron populations 1.21851 0.79477 1.04350 1.00749 1.47673 1.06811 1.04831 1.75493 1.21954 0.98927 0.86995 0.95480 1.21195 0.94065 0.82958 0.94307 0.87535 1.86696 1.33534 1.58268 1.55585 1.21714 0.96205 0.97202 1.01146 1.21463 1.00649 0.91656 0.95631 1.22128 0.95703 0.99205 1.02207 1.22789 0.92256 0.96051 0.95497 1.67720 1.40945 0.98491 1.11847 1.22573 0.91022 0.96604 0.94524 1.21538 0.87744 0.85649 0.71802 1.90506 1.14971 1.87615 1.50722 1.18084 0.94227 0.85235 0.98753 0.90696 1.20623 1.11699 1.32586 0.89200 0.91652 1.24927 0.95791 0.94797 0.97653 1.69949 1.18051 1.31064 1.32286 0.86530 0.77467 0.78963 0.84852 1.20456 1.21081 1.19552 1.20077 0.93185 0.96734 0.91588 1.20898 0.94173 0.95174 0.99083 1.20985 0.99846 0.98162 0.96711 1.20793 0.97652 1.01051 0.97136 1.20871 0.95960 0.98695 0.99889 1.20954 0.99014 0.97323 0.96164 0.93786 0.92727 0.87932 0.90605 0.89830 0.77519 0.84664 0.84762 0.82873 0.82789 0.92533 0.86593 0.87685 0.87869 0.87737 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.00 59.85 0.60 1.82 16 2 N -0.61 -10.68 2.83 -181.58 -0.51 -11.19 16 3 C 0.09 1.28 5.16 -4.04 -0.02 1.26 16 4 C 0.14 1.85 3.50 -27.89 -0.10 1.75 16 5 H 0.11 1.42 8.06 -51.93 -0.42 1.00 16 6 O -0.54 -8.96 12.04 -38.25 -0.46 -9.42 16 7 C -0.16 -1.88 5.02 -104.49 -0.52 -2.41 16 8 C -0.07 -0.66 9.84 -39.28 -0.39 -1.05 16 9 C -0.17 -1.51 10.11 -39.44 -0.40 -1.90 16 10 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16 11 N -0.48 -6.11 10.36 -13.25 -0.14 -6.25 16 12 C 0.11 1.37 10.50 -17.54 -0.18 1.19 16 13 C 0.54 11.50 6.19 -10.99 -0.07 11.43 16 14 O -0.56 -12.68 13.89 2.54 0.04 -12.64 16 15 C 0.06 1.35 1.39 -94.07 -0.13 1.22 16 16 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 17 C -0.50 -12.66 6.91 -34.44 -0.24 -12.90 16 18 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 20 N -0.88 -22.89 12.99 55.43 0.72 -22.17 16 21 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 C -0.01 -0.35 4.55 -104.63 -0.48 -0.82 16 26 C -0.08 -1.72 8.06 -39.59 -0.32 -2.04 16 27 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 28 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 29 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 30 C -0.12 -2.54 9.67 -39.59 -0.38 -2.92 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 34 H 0.08 0.87 8.07 -51.94 -0.42 0.45 16 35 H 0.08 1.27 7.37 -51.93 -0.38 0.89 16 36 H 0.38 5.76 6.97 45.56 0.32 6.08 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.15 1.82 6.64 -52.49 -0.35 1.47 16 41 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.12 2.74 7.70 -52.48 -0.40 2.33 16 43 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.11 2.27 7.96 -52.49 -0.42 1.85 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -30.63 385.92 -9.29 -39.92 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.61 Total: 13.08 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -4.11 Total: -12.37 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.07 Total: -39.61 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.43 Total: -22.06 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.63 -9.29 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420513236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.172 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds