Wall clock time and date at job start Tue Mar 31 2020 23:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00202 * 2 1 4 4 H 1.48493 * 109.47076 * 271.95168 * 3 2 1 5 5 H 1.48506 * 109.47119 * 31.95083 * 3 2 1 6 6 H 1.48495 * 109.47078 * 151.95128 * 3 2 1 7 7 C 1.38808 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00615 * 336.96009 * 7 2 1 9 9 N 1.36940 * 119.99695 * 156.96379 * 7 2 1 10 10 C 1.46498 * 119.99953 * 320.67089 * 9 7 2 11 11 C 1.53003 * 109.47086 * 270.27264 * 10 9 7 12 12 C 1.52995 * 109.47266 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47206 * 180.02562 * 12 11 10 14 14 C 1.34780 * 119.99850 * 180.02562 * 13 12 11 15 15 O 1.21491 * 120.00150 * 359.97438 * 14 13 12 16 16 C 1.48353 * 119.99667 * 180.02562 * 14 13 12 17 17 C 1.40168 * 119.19763 * 179.97438 * 16 14 13 18 18 C 1.36627 * 119.70340 * 179.97438 * 17 16 14 19 19 C 1.40588 * 118.20769 * 0.02562 * 18 17 16 20 20 C 1.40743 * 121.37312 * 180.02562 * 19 18 17 21 21 C 1.36584 * 118.13181 * 179.97438 * 20 19 18 22 22 C 1.39434 * 119.84640 * 0.02562 * 21 20 19 23 23 N 1.31020 * 121.84155 * 359.97438 * 22 21 20 24 24 C 1.33862 * 121.42534 * 359.97438 * 23 22 21 25 25 N 1.31885 * 119.20416 * 359.72784 * 16 14 13 26 26 C 1.46506 * 119.99716 * 140.94502 * 9 7 2 27 27 C 1.53001 * 117.50103 * 3.73732 * 26 9 7 28 28 C 1.52998 * 117.49984 * 295.11330 * 26 9 7 29 29 H 0.97005 * 119.99435 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47304 * 30.27530 * 10 9 7 31 31 H 1.09002 * 109.46866 * 150.27629 * 10 9 7 32 32 H 1.08994 * 109.47266 * 300.00290 * 11 10 9 33 33 H 1.09002 * 109.46970 * 60.00429 * 11 10 9 34 34 H 1.09008 * 109.47220 * 300.00463 * 12 11 10 35 35 H 1.08999 * 109.47317 * 60.00101 * 12 11 10 36 36 H 0.96993 * 120.00012 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.15441 * 0.02562 * 17 16 14 38 38 H 1.07996 * 120.89414 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.93010 * 359.95371 * 20 19 18 40 40 H 1.07994 * 120.07596 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.07549 * 180.02562 * 22 21 20 42 42 H 1.09007 * 115.54811 * 149.43863 * 26 9 7 43 43 H 1.08996 * 117.49725 * 359.97438 * 27 26 9 44 44 H 1.09002 * 117.49787 * 145.01941 * 27 26 9 45 45 H 1.09007 * 117.49185 * 214.98020 * 28 26 9 46 46 H 1.08998 * 117.49996 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4565 2.0702 -1.3992 5 1 1.4690 2.6404 0.7409 6 1 3.5678 1.4285 0.6583 7 6 2.0102 -1.2022 0.0005 8 1 1.5348 -2.1000 0.3670 9 7 3.2977 -1.2497 -0.4635 10 6 3.6800 -0.4710 -1.6441 11 6 3.4601 -1.3122 -2.9030 12 6 3.8599 -0.4992 -4.1359 13 7 3.6487 -1.3045 -5.3414 14 6 3.9352 -0.7904 -6.5539 15 8 4.3680 0.3410 -6.6472 16 6 3.7208 -1.6057 -7.7747 17 6 4.0237 -1.0541 -9.0272 18 6 3.8308 -1.7960 -10.1581 19 6 3.3283 -3.1016 -10.0188 20 6 3.1046 -3.9241 -11.1388 21 6 2.6153 -5.1815 -10.9269 22 6 2.3524 -5.6140 -9.6277 23 7 2.5618 -4.8454 -8.5876 24 6 3.0409 -3.6028 -8.7232 25 7 3.2544 -2.8334 -7.6548 26 6 4.2913 -2.0839 0.2171 27 6 3.8091 -2.9452 1.3861 28 6 4.6673 -1.7067 1.6513 29 1 -0.4849 0.8401 -0.0004 30 1 3.0695 0.4304 -1.6981 31 1 4.7317 -0.1938 -1.5715 32 1 4.0705 -2.2135 -2.8490 33 1 2.4084 -1.5894 -2.9756 34 1 3.2498 0.4024 -4.1902 35 1 4.9116 -0.2223 -4.0631 36 1 3.3035 -2.2079 -5.2669 37 1 4.4088 -0.0476 -9.0980 38 1 4.0573 -1.3901 -11.1329 39 1 3.3138 -3.5707 -12.1376 40 1 2.4316 -5.8389 -11.7638 41 1 1.9660 -6.6109 -9.4745 42 1 5.0772 -2.4921 -0.4186 43 1 2.7527 -2.8909 1.6491 44 1 4.2777 -3.9203 1.5197 45 1 5.7006 -1.8669 1.9594 46 1 4.1758 -0.8375 2.0885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479870398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:34 Heat of formation + Delta-G solvation = 90.620442 kcal Electronic energy + Delta-G solvation = -27876.838381 eV Core-core repulsion = 23961.574296 eV Total energy + Delta-G solvation = -3915.264085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.64640 -39.77315 -37.86548 -37.33550 -35.47454 -34.56454 -33.61659 -32.00937 -31.47868 -31.31338 -29.74100 -26.45109 -25.14778 -24.51780 -23.60702 -23.02513 -21.68799 -21.18494 -21.05204 -19.60363 -19.19593 -18.31404 -17.60481 -16.53886 -16.44836 -15.88562 -15.78391 -15.50713 -15.30059 -15.05833 -14.94670 -14.61721 -14.35607 -13.95829 -13.64259 -13.59001 -13.49076 -12.72695 -12.53683 -12.41918 -12.33604 -12.10511 -12.08282 -11.54565 -11.16411 -11.08797 -11.03216 -10.82686 -10.61799 -10.38032 -10.22920 -9.92464 -9.70339 -9.45185 -9.43620 -9.41006 -9.38281 -9.33502 -8.94195 -8.48765 -6.71454 -6.02987 -3.45699 -0.36026 0.07365 1.43204 2.02167 2.91565 2.98232 3.30521 3.32607 3.47192 3.53814 3.75922 3.93540 4.15049 4.19144 4.31691 4.44618 4.50375 4.61666 4.76139 4.85170 4.88397 4.89384 5.19908 5.27205 5.35063 5.42361 5.50207 5.56083 5.66852 5.73348 5.81017 5.84032 5.99601 6.04235 6.11069 6.12457 6.19992 6.36159 6.44737 6.51854 6.54726 6.77895 6.86858 6.93589 6.96832 7.13745 7.49622 7.71188 8.04220 8.12446 8.39577 8.97650 9.68355 10.09051 11.11756 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002273 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.014227 B =12318.262606 C =12953.218930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.041 3.959 3 Si 0.871 3.129 4 H -0.282 1.282 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.271 4.271 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.143 3.857 11 C -0.146 4.146 12 C 0.115 3.885 13 N -0.697 5.697 14 C 0.563 3.437 15 O -0.531 6.531 16 C 0.151 3.849 17 C -0.129 4.129 18 C -0.047 4.047 19 C -0.144 4.144 20 C -0.046 4.046 21 C -0.174 4.174 22 C 0.159 3.841 23 N -0.457 5.457 24 C 0.302 3.698 25 N -0.434 5.434 26 C 0.120 3.880 27 C -0.189 4.189 28 C -0.224 4.224 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -8.624 -24.690 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.161 4.161 3 Si 0.701 3.299 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.399 4.399 8 H 0.099 0.901 9 N -0.291 5.291 10 C 0.017 3.983 11 C -0.187 4.187 12 C -0.008 4.008 13 N -0.348 5.348 14 C 0.346 3.654 15 O -0.407 6.407 16 C -0.007 4.007 17 C -0.150 4.150 18 C -0.074 4.074 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.194 4.194 22 C -0.018 4.018 23 N -0.165 5.165 24 C 0.064 3.936 25 N -0.146 5.146 26 C 0.012 3.988 27 C -0.227 4.227 28 C -0.265 4.265 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.317 -8.305 -22.958 25.792 hybrid contribution 0.476 1.090 -1.560 1.962 sum 8.793 -7.215 -24.518 27.028 Atomic orbital electron populations 1.69878 1.06036 1.26869 1.50692 1.25509 0.95048 0.97781 0.97720 0.87052 0.80784 0.84646 0.77412 1.20939 1.22884 1.19107 1.18704 0.86257 0.94455 1.40479 0.90064 1.43655 1.07071 1.52072 1.26280 1.21090 0.97906 0.94104 0.85248 1.22402 1.03206 0.99394 0.93673 1.21597 1.01398 0.94846 0.82974 1.46029 1.63937 1.19312 1.05504 1.17859 0.78942 0.85780 0.82852 1.90793 1.45710 1.17880 1.86349 1.21557 0.94533 0.90037 0.94567 1.21870 0.99323 1.02420 0.91373 1.21468 0.94416 0.91787 0.99741 1.19745 1.02706 0.96670 0.95794 1.21504 0.94301 0.93274 0.98235 1.22082 1.00864 0.97204 0.99202 1.23193 0.92247 0.99000 0.87390 1.67671 1.11628 1.03064 1.34143 1.19214 0.96065 0.91483 0.86882 1.67396 1.10564 1.04144 1.32536 1.21166 0.93994 0.97159 0.86525 1.23057 1.01072 0.93453 1.05111 1.23375 0.98295 0.99589 1.05272 0.92605 0.92217 0.93800 0.91942 0.90268 0.91110 0.91382 0.74952 0.82480 0.83204 0.83771 0.83707 0.81309 0.89092 0.87915 0.90519 0.90866 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.97 55.49 0.78 -26.20 16 2 C 0.04 1.16 5.28 -17.43 -0.09 1.07 16 3 Si 0.87 22.03 25.32 -169.99 -4.30 17.73 16 4 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.27 -7.35 8.93 -15.06 -0.13 -7.48 16 8 H 0.08 2.39 6.86 -52.49 -0.36 2.03 16 9 N -0.57 -13.27 2.37 -165.66 -0.39 -13.67 16 10 C 0.14 2.98 4.57 -4.04 -0.02 2.96 16 11 C -0.15 -2.62 5.65 -26.73 -0.15 -2.78 16 12 C 0.12 1.87 5.67 -4.04 -0.02 1.85 16 13 N -0.70 -10.60 5.54 -61.09 -0.34 -10.93 16 14 C 0.56 8.61 7.81 -12.10 -0.09 8.52 16 15 O -0.53 -9.23 16.28 5.37 0.09 -9.14 16 16 C 0.15 1.99 6.75 -82.96 -0.56 1.43 16 17 C -0.13 -1.31 9.54 -39.44 -0.38 -1.69 16 18 C -0.05 -0.37 9.89 -39.28 -0.39 -0.76 16 19 C -0.14 -1.32 5.75 -106.68 -0.61 -1.94 16 20 C -0.05 -0.27 9.90 -39.23 -0.39 -0.66 16 21 C -0.17 -0.88 10.04 -39.73 -0.40 -1.28 16 22 C 0.16 1.18 11.14 -17.45 -0.19 0.98 16 23 N -0.46 -5.50 10.43 -12.59 -0.13 -5.63 16 24 C 0.30 3.82 7.62 -157.91 -1.20 2.61 16 25 N -0.43 -6.12 9.56 -9.19 -0.09 -6.20 16 26 C 0.12 2.42 6.57 -67.93 -0.45 1.97 16 27 C -0.19 -3.63 9.80 -26.73 -0.26 -3.90 16 28 C -0.22 -4.34 10.35 -26.73 -0.28 -4.61 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.06 1.38 3.46 -51.93 -0.18 1.20 16 31 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.41 6.02 7.78 -40.82 -0.32 5.70 16 37 H 0.16 1.41 7.60 -52.49 -0.40 1.01 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.10 2.23 6.45 -51.93 -0.33 1.90 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 46 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -34.44 385.35 -10.46 -44.90 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.25 Total: 7.05 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -5.62 Total: -3.70 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.18 Total: -62.64 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.30 Total: 17.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.44 -10.46 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479870398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.518 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds