Wall clock time and date at job start Tue Mar 31 2020 23:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00202 * 2 1 4 4 H 1.48493 * 109.47076 * 271.95168 * 3 2 1 5 5 H 1.48506 * 109.47119 * 31.95083 * 3 2 1 6 6 H 1.48495 * 109.47078 * 151.95128 * 3 2 1 7 7 C 1.38808 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00615 * 336.96009 * 7 2 1 9 9 N 1.36940 * 119.99695 * 156.96379 * 7 2 1 10 10 C 1.46498 * 119.99953 * 320.67089 * 9 7 2 11 11 C 1.53003 * 109.47086 * 270.27264 * 10 9 7 12 12 C 1.52995 * 109.47266 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47206 * 180.02562 * 12 11 10 14 14 C 1.34780 * 119.99850 * 180.02562 * 13 12 11 15 15 O 1.21491 * 120.00150 * 359.97438 * 14 13 12 16 16 C 1.48353 * 119.99667 * 180.02562 * 14 13 12 17 17 C 1.40168 * 119.19763 * 179.97438 * 16 14 13 18 18 C 1.36627 * 119.70340 * 179.97438 * 17 16 14 19 19 C 1.40588 * 118.20769 * 0.02562 * 18 17 16 20 20 C 1.40743 * 121.37312 * 180.02562 * 19 18 17 21 21 C 1.36584 * 118.13181 * 179.97438 * 20 19 18 22 22 C 1.39434 * 119.84640 * 0.02562 * 21 20 19 23 23 N 1.31020 * 121.84155 * 359.97438 * 22 21 20 24 24 C 1.33862 * 121.42534 * 359.97438 * 23 22 21 25 25 N 1.31885 * 119.20416 * 359.72784 * 16 14 13 26 26 C 1.46506 * 119.99716 * 140.94502 * 9 7 2 27 27 C 1.53001 * 117.50103 * 3.73732 * 26 9 7 28 28 C 1.52998 * 117.49984 * 295.11330 * 26 9 7 29 29 H 0.97005 * 119.99435 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47304 * 30.27530 * 10 9 7 31 31 H 1.09002 * 109.46866 * 150.27629 * 10 9 7 32 32 H 1.08994 * 109.47266 * 300.00290 * 11 10 9 33 33 H 1.09002 * 109.46970 * 60.00429 * 11 10 9 34 34 H 1.09008 * 109.47220 * 300.00463 * 12 11 10 35 35 H 1.08999 * 109.47317 * 60.00101 * 12 11 10 36 36 H 0.96993 * 120.00012 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.15441 * 0.02562 * 17 16 14 38 38 H 1.07996 * 120.89414 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.93010 * 359.95371 * 20 19 18 40 40 H 1.07994 * 120.07596 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.07549 * 180.02562 * 22 21 20 42 42 H 1.09007 * 115.54811 * 149.43863 * 26 9 7 43 43 H 1.08996 * 117.49725 * 359.97438 * 27 26 9 44 44 H 1.09002 * 117.49787 * 145.01941 * 27 26 9 45 45 H 1.09007 * 117.49185 * 214.98020 * 28 26 9 46 46 H 1.08998 * 117.49996 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4565 2.0702 -1.3992 5 1 1.4690 2.6404 0.7409 6 1 3.5678 1.4285 0.6583 7 6 2.0102 -1.2022 0.0005 8 1 1.5348 -2.1000 0.3670 9 7 3.2977 -1.2497 -0.4635 10 6 3.6800 -0.4710 -1.6441 11 6 3.4601 -1.3122 -2.9030 12 6 3.8599 -0.4992 -4.1359 13 7 3.6487 -1.3045 -5.3414 14 6 3.9352 -0.7904 -6.5539 15 8 4.3680 0.3410 -6.6472 16 6 3.7208 -1.6057 -7.7747 17 6 4.0237 -1.0541 -9.0272 18 6 3.8308 -1.7960 -10.1581 19 6 3.3283 -3.1016 -10.0188 20 6 3.1046 -3.9241 -11.1388 21 6 2.6153 -5.1815 -10.9269 22 6 2.3524 -5.6140 -9.6277 23 7 2.5618 -4.8454 -8.5876 24 6 3.0409 -3.6028 -8.7232 25 7 3.2544 -2.8334 -7.6548 26 6 4.2913 -2.0839 0.2171 27 6 3.8091 -2.9452 1.3861 28 6 4.6673 -1.7067 1.6513 29 1 -0.4849 0.8401 -0.0004 30 1 3.0695 0.4304 -1.6981 31 1 4.7317 -0.1938 -1.5715 32 1 4.0705 -2.2135 -2.8490 33 1 2.4084 -1.5894 -2.9756 34 1 3.2498 0.4024 -4.1902 35 1 4.9116 -0.2223 -4.0631 36 1 3.3035 -2.2079 -5.2669 37 1 4.4088 -0.0476 -9.0980 38 1 4.0573 -1.3901 -11.1329 39 1 3.3138 -3.5707 -12.1376 40 1 2.4316 -5.8389 -11.7638 41 1 1.9660 -6.6109 -9.4745 42 1 5.0772 -2.4921 -0.4186 43 1 2.7527 -2.8909 1.6491 44 1 4.2777 -3.9203 1.5197 45 1 5.7006 -1.8669 1.9594 46 1 4.1758 -0.8375 2.0885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479870398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:33 Heat of formation + Delta-G solvation = 67.163567 kcal Electronic energy + Delta-G solvation = -27877.855547 eV Core-core repulsion = 23961.574296 eV Total energy + Delta-G solvation = -3916.281252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.35718 -40.84495 -39.09890 -38.58449 -36.84471 -35.41799 -35.09534 -33.79049 -32.34823 -32.07524 -31.25321 -27.64708 -26.48855 -25.53722 -24.99565 -23.66666 -23.20320 -22.68904 -22.12311 -21.40570 -19.96469 -19.25270 -18.45336 -18.18856 -17.44157 -17.30470 -17.12905 -16.82971 -16.72473 -16.08895 -15.79604 -15.53070 -15.34341 -15.20391 -15.12203 -14.58368 -14.42798 -14.13745 -13.99856 -13.95617 -13.80711 -13.25892 -12.88639 -12.77603 -12.68972 -12.56094 -12.43650 -12.16866 -12.07896 -11.96206 -11.78990 -11.52069 -11.33945 -11.22784 -10.96134 -10.59899 -10.30376 -10.13850 -10.05085 -9.92155 -8.62761 -8.23025 -5.61281 -1.02951 -0.57241 0.80493 1.24006 1.27822 1.38310 1.49474 1.86666 2.08079 2.38978 2.51277 2.96868 3.02961 3.18607 3.34715 3.35280 3.42874 3.60814 3.74725 3.92203 4.02640 4.03494 4.09879 4.23643 4.29159 4.34788 4.40207 4.45696 4.49422 4.55417 4.64823 4.69112 4.75772 4.82904 4.93968 4.94529 5.02587 5.11850 5.18882 5.19733 5.23301 5.32164 5.39266 5.54385 5.59284 5.94106 6.08168 6.20142 6.37759 6.89459 6.99067 7.06162 7.62165 8.03263 8.96150 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.002273 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.014227 B =12318.262606 C =12953.218930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.015 4.015 3 Si 0.931 3.069 4 H -0.270 1.270 5 H -0.311 1.311 6 H -0.258 1.258 7 C -0.249 4.249 8 H 0.045 0.955 9 N -0.586 5.586 10 C 0.137 3.863 11 C -0.128 4.128 12 C 0.125 3.875 13 N -0.699 5.699 14 C 0.562 3.438 15 O -0.558 6.558 16 C 0.126 3.874 17 C -0.145 4.145 18 C -0.023 4.023 19 C -0.153 4.153 20 C -0.040 4.040 21 C -0.161 4.161 22 C 0.159 3.841 23 N -0.513 5.513 24 C 0.268 3.732 25 N -0.470 5.470 26 C 0.105 3.895 27 C -0.188 4.188 28 C -0.214 4.214 29 H 0.262 0.738 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.416 0.584 37 H 0.164 0.836 38 H 0.199 0.801 39 H 0.190 0.810 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.127 0.873 43 H 0.067 0.933 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -9.854 -28.441 32.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.212 4.212 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.240 1.240 6 H -0.182 1.182 7 C -0.379 4.379 8 H 0.063 0.937 9 N -0.306 5.306 10 C 0.011 3.989 11 C -0.168 4.168 12 C 0.001 3.999 13 N -0.349 5.349 14 C 0.347 3.653 15 O -0.436 6.436 16 C -0.029 4.029 17 C -0.166 4.166 18 C -0.049 4.049 19 C -0.158 4.158 20 C -0.066 4.066 21 C -0.181 4.181 22 C -0.018 4.018 23 N -0.224 5.224 24 C 0.030 3.970 25 N -0.183 5.183 26 C -0.003 4.003 27 C -0.226 4.226 28 C -0.254 4.254 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.252 0.748 37 H 0.182 0.818 38 H 0.216 0.784 39 H 0.207 0.793 40 H 0.207 0.793 41 H 0.213 0.787 42 H 0.145 0.855 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.005 -9.553 -26.715 30.431 hybrid contribution -0.379 1.182 -0.517 1.344 sum 10.626 -8.371 -27.232 30.407 Atomic orbital electron populations 1.69999 1.07642 1.27351 1.53871 1.26060 0.95539 1.00891 0.98672 0.86068 0.79454 0.80664 0.77809 1.19662 1.23952 1.18244 1.18530 0.87933 0.92979 1.38491 0.93702 1.43762 1.06391 1.52832 1.27575 1.21175 0.98998 0.93307 0.85382 1.22123 1.01621 0.99763 0.93336 1.21386 1.01778 0.93935 0.82795 1.45972 1.64174 1.19262 1.05484 1.18248 0.77945 0.85686 0.83421 1.90753 1.46983 1.18992 1.86869 1.21282 0.96865 0.90224 0.94538 1.21984 1.00403 1.03124 0.91052 1.21980 0.91511 0.90632 1.00778 1.20060 1.02467 0.97763 0.95554 1.22046 0.92809 0.92841 0.98898 1.22561 0.98715 0.97562 0.99225 1.23887 0.90511 0.99477 0.87889 1.67624 1.14147 1.03818 1.36766 1.19517 0.97520 0.91964 0.88034 1.67195 1.11843 1.04793 1.34515 1.21536 0.94259 0.97123 0.87345 1.23039 0.99511 0.95386 1.04661 1.23352 0.99924 0.98242 1.03885 0.92888 0.94608 0.90792 0.90162 0.93302 0.92768 0.89931 0.74760 0.81804 0.78365 0.79307 0.79289 0.78676 0.85507 0.91462 0.86933 0.87040 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.91 13.97 21.65 0.30 -59.60 16 2 C -0.01 -0.87 5.28 84.86 0.45 -0.42 16 3 Si 0.93 46.96 25.32 68.60 1.74 48.70 16 4 H -0.27 -12.94 6.52 99.48 0.65 -12.29 16 5 H -0.31 -16.02 7.11 99.48 0.71 -15.32 16 6 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -14.07 8.93 84.03 0.75 -13.32 16 8 H 0.05 2.82 6.86 -2.91 -0.02 2.80 16 9 N -0.59 -27.16 2.37 -678.01 -1.61 -28.77 16 10 C 0.14 5.62 4.57 86.38 0.39 6.01 16 11 C -0.13 -4.63 5.65 30.59 0.17 -4.46 16 12 C 0.12 4.12 5.67 86.38 0.49 4.61 16 13 N -0.70 -22.15 5.54 -465.48 -2.58 -24.73 16 14 C 0.56 17.97 7.81 86.94 0.68 18.65 16 15 O -0.56 -19.96 16.28 -3.69 -0.06 -20.02 16 16 C 0.13 3.48 6.75 42.30 0.29 3.77 16 17 C -0.14 -2.86 9.54 22.36 0.21 -2.65 16 18 C -0.02 -0.29 9.89 22.47 0.22 -0.07 16 19 C -0.15 -2.46 5.75 -21.20 -0.12 -2.58 16 20 C -0.04 -0.28 9.90 22.50 0.22 -0.06 16 21 C -0.16 -0.93 10.04 22.17 0.22 -0.71 16 22 C 0.16 2.02 11.14 85.10 0.95 2.97 16 23 N -0.51 -12.39 10.43 -193.75 -2.02 -14.41 16 24 C 0.27 6.80 7.62 135.12 1.03 7.83 16 25 N -0.47 -13.93 9.56 -182.98 -1.75 -15.68 16 26 C 0.10 4.02 6.57 44.99 0.30 4.31 16 27 C -0.19 -7.03 9.80 30.60 0.30 -6.73 16 28 C -0.21 -7.81 10.35 30.59 0.32 -7.49 16 29 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 30 H 0.04 1.65 3.46 -2.39 -0.01 1.65 16 31 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.42 12.86 7.78 -92.71 -0.72 12.14 16 37 H 0.16 2.87 7.60 -2.91 -0.02 2.84 16 38 H 0.20 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.19 -0.38 8.06 -2.91 -0.02 -0.41 16 40 H 0.19 -0.57 8.06 -2.91 -0.02 -0.60 16 41 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.13 4.00 8.14 -2.38 -0.02 3.98 16 43 H 0.07 3.01 6.45 -2.39 -0.02 3.00 16 44 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 45 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 46 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -82.74 385.35 1.12 -81.61 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.24 Total: 23.26 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.87 Total: 9.65 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -7.66 Total: -143.20 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.74 Total: 48.70 kcal Total: -82.74 1.12 -81.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479870398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.776 kcal (2) G-P(sol) polarization free energy of solvation -82.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds