Wall clock time and date at job start Tue Mar 31 2020 22:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00227 * 2 1 4 4 H 1.08003 * 119.99772 * 202.68113 * 3 2 1 5 5 C 1.38812 * 119.99990 * 22.68159 * 3 2 1 6 6 N 1.31614 * 119.99759 * 11.49371 * 5 3 2 7 7 Si 1.86795 * 119.99700 * 191.49386 * 5 3 2 8 8 H 1.48501 * 109.47253 * 60.00404 * 7 5 3 9 9 H 1.48501 * 109.46811 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47227 * 299.99705 * 7 5 3 11 11 C 1.46504 * 119.99830 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46764 * 269.99531 * 11 2 1 13 13 H 1.09002 * 109.47316 * 304.99973 * 12 11 2 14 14 O 1.42899 * 109.46998 * 65.00122 * 12 11 2 15 15 C 1.53001 * 109.46925 * 184.99575 * 12 11 2 16 16 N 1.46507 * 109.46740 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00123 * 270.00000 * 16 15 12 18 18 C 1.34775 * 119.99556 * 90.00594 * 16 15 12 19 19 O 1.21286 * 120.00371 * 0.02562 * 18 16 15 20 20 C 1.50703 * 119.99612 * 179.97438 * 18 16 15 21 21 O 1.42899 * 109.46873 * 179.97438 * 20 18 16 22 22 C 1.35946 * 116.99790 * 180.02562 * 21 20 18 23 23 C 1.38699 * 120.03163 * 359.72597 * 22 21 20 24 24 C 1.38154 * 119.96865 * 179.79081 * 23 22 21 25 25 C 1.38456 * 120.02894 * 0.48335 * 24 23 22 26 26 F 1.35103 * 119.96502 * 179.72084 * 25 24 23 27 27 C 1.38450 * 120.06012 * 359.75051 * 25 24 23 28 28 C 1.38146 * 120.03342 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.46900 * 273.93208 * 1 2 3 30 30 H 1.09005 * 109.47119 * 33.92522 * 1 2 3 31 31 H 1.08995 * 109.47566 * 153.93361 * 1 2 3 32 32 H 0.97000 * 119.99952 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47341 * 149.99813 * 11 2 1 34 34 H 1.09003 * 109.47355 * 29.99169 * 11 2 1 35 35 H 0.96705 * 114.00547 * 59.99914 * 14 12 11 36 36 H 1.08993 * 109.47217 * 300.00379 * 15 12 11 37 37 H 1.09006 * 109.46921 * 60.00344 * 15 12 11 38 38 H 1.09004 * 109.47068 * 89.99998 * 17 16 15 39 39 H 1.08994 * 109.47416 * 210.00309 * 17 16 15 40 40 H 1.09007 * 109.47332 * 330.00607 * 17 16 15 41 41 H 1.08991 * 109.47219 * 299.99829 * 20 18 16 42 42 H 1.09000 * 109.46635 * 60.00499 * 20 18 16 43 43 H 1.08004 * 120.01419 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.98283 * 180.20983 * 24 23 22 45 45 H 1.08009 * 119.98130 * 179.97438 * 27 25 24 46 46 H 1.07999 * 120.01946 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1671 1.2220 -0.3607 5 6 1.5362 2.3416 0.4636 6 7 0.3913 2.2656 1.1082 7 14 2.3357 4.0045 0.1724 8 1 2.4797 4.2357 -1.2875 9 1 1.4874 5.0715 0.7616 10 1 3.6756 4.0284 0.8120 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9643 -0.9139 1.9812 14 8 1.2061 -1.9943 2.0806 15 6 3.3237 -2.9688 1.4431 16 7 3.5684 -3.3918 2.8243 17 6 4.7332 -2.8812 3.5513 18 6 2.7219 -4.2508 3.4259 19 8 1.7578 -4.6740 2.8238 20 6 2.9739 -4.6864 4.8464 21 8 1.9460 -5.5903 5.2568 22 6 2.0247 -6.0808 6.5223 23 6 3.0727 -5.7039 7.3489 24 6 3.1490 -6.1997 8.6362 25 6 2.1854 -7.0803 9.0978 26 9 2.2644 -7.5688 10.3549 27 6 1.1414 -7.4611 8.2720 28 6 1.0601 -6.9632 6.9859 29 1 -0.3633 0.0705 1.0253 30 1 -0.3633 0.8528 -0.5736 31 1 -0.3634 -0.9231 -0.4515 32 1 -0.0373 3.0731 1.4325 33 1 3.1498 -1.1383 -0.5143 34 1 1.6083 -2.0283 -0.5146 35 1 0.6954 -2.6956 1.6532 36 1 2.8119 -3.7657 0.9038 37 1 4.2745 -2.7526 0.9558 38 1 4.4621 -1.9634 4.0731 39 1 5.0652 -3.6259 4.2746 40 1 5.5390 -2.6742 2.8470 41 1 3.9416 -5.1841 4.9075 42 1 2.9720 -3.8139 5.4997 43 1 3.8271 -5.0208 6.9875 44 1 3.9631 -5.9038 9.2812 45 1 0.3906 -8.1484 8.6332 46 1 0.2458 -7.2608 6.3419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486356592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:46 Heat of formation + Delta-G solvation = -102.165707 kcal Electronic energy + Delta-G solvation = -29329.087030 eV Core-core repulsion = 24942.401134 eV Total energy + Delta-G solvation = -4386.685896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.12234 -40.71079 -39.64641 -37.61123 -36.94421 -35.38009 -34.50113 -31.72501 -31.35772 -30.56658 -29.67986 -28.17704 -27.05224 -25.78440 -25.14671 -23.49513 -22.62549 -21.84298 -20.49664 -19.46597 -18.84699 -17.71720 -17.31359 -16.84820 -16.74104 -16.56255 -16.10935 -15.85676 -15.45047 -15.08045 -14.96728 -14.70215 -14.40298 -14.21023 -13.97922 -13.67980 -13.40194 -13.33654 -13.23694 -13.12208 -12.85918 -12.66079 -12.52024 -12.40278 -11.71790 -11.53357 -11.27160 -11.24837 -11.07897 -10.84153 -10.69563 -10.41139 -10.25202 -9.98402 -9.94483 -9.81324 -9.58513 -9.56488 -8.60066 -8.45936 -8.39755 -6.65752 -5.67708 -3.14092 0.76352 0.85037 2.30305 2.57034 3.19581 3.30670 3.38043 3.43779 3.44834 3.95382 4.18140 4.33966 4.39512 4.50801 4.54574 4.72446 4.78246 4.87695 4.93429 5.08348 5.14579 5.17615 5.30062 5.47710 5.48550 5.51839 5.56608 5.71689 5.74335 5.78429 5.83274 5.88503 6.03840 6.11074 6.29227 6.46170 6.57198 6.82488 6.88253 6.94909 7.28933 7.47405 7.79228 7.94210 8.12570 8.43082 8.48915 9.27333 9.90983 10.40902 11.36311 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002055 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.061840 B =13618.937682 C =13861.409563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.592 5.592 3 C -0.259 4.259 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.125 3.875 12 C 0.070 3.930 13 H 0.095 0.905 14 O -0.542 6.542 15 C 0.082 3.918 16 N -0.604 5.604 17 C 0.073 3.927 18 C 0.522 3.478 19 O -0.513 6.513 20 C 0.042 3.958 21 O -0.283 6.283 22 C 0.126 3.874 23 C -0.184 4.184 24 C -0.111 4.111 25 C 0.055 3.945 26 F -0.143 7.143 27 C -0.111 4.111 28 C -0.120 4.120 29 H 0.034 0.966 30 H 0.040 0.960 31 H -0.007 1.007 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.363 0.637 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -18.928 12.012 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.314 5.314 3 C -0.389 4.389 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.545 5.545 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C -0.004 4.004 12 C 0.006 3.994 13 H 0.113 0.887 14 O -0.346 6.346 15 C -0.041 4.041 16 N -0.339 5.339 17 C -0.071 4.071 18 C 0.308 3.692 19 O -0.387 6.387 20 C -0.036 4.036 21 O -0.195 6.195 22 C 0.080 3.920 23 C -0.203 4.203 24 C -0.130 4.130 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.130 4.130 28 C -0.138 4.138 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.209 0.791 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.161 0.839 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.579 -18.568 12.023 23.725 hybrid contribution 0.692 0.751 0.053 1.023 sum 9.271 -17.817 12.076 23.435 Atomic orbital electron populations 1.20767 0.82215 0.95008 0.99552 1.43829 1.02034 1.00117 1.85383 1.19126 0.98228 0.85526 1.36019 0.91601 1.25066 0.97769 0.98489 0.98290 1.70086 1.17982 1.27084 1.39367 0.86360 0.78439 0.83989 0.77825 1.21104 1.21654 1.21054 1.21448 0.96442 0.89402 0.93067 1.23261 0.84415 0.93665 0.98015 0.88692 1.86623 1.32218 1.59392 1.56353 1.22537 1.01437 0.99214 0.80883 1.47610 1.26012 1.45368 1.14866 1.21892 0.88044 0.99692 0.97423 1.19708 0.83082 0.79279 0.87135 1.90706 1.27707 1.55119 1.65191 1.22594 0.91278 0.94132 0.95623 1.86202 1.47930 1.58957 1.26454 1.19105 0.94609 0.94162 0.84170 1.21141 0.99992 1.04579 0.94609 1.20930 0.98877 0.96975 0.96206 1.17584 0.98277 0.99785 0.80799 1.91492 1.96277 1.86627 1.37733 1.20977 0.97935 1.00925 0.93180 1.20335 0.99607 0.98222 0.95672 0.94715 0.94160 0.98897 0.93742 0.93257 0.94135 0.79145 0.89913 0.89857 0.91861 0.91578 0.90405 0.89206 0.88790 0.84417 0.84393 0.83945 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.33 8.61 59.85 0.52 4.85 16 2 N -0.59 -14.95 2.89 -181.11 -0.52 -15.47 16 3 C -0.26 -7.09 9.67 -15.06 -0.15 -7.23 16 4 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 5 C 0.00 0.08 5.12 -17.43 -0.09 -0.01 16 6 N -0.90 -26.82 10.61 55.49 0.59 -26.23 16 7 Si 0.90 21.81 29.57 -169.99 -5.03 16.79 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.13 2.48 5.37 -4.04 -0.02 2.46 16 12 C 0.07 1.27 3.48 -26.73 -0.09 1.18 16 13 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 14 O -0.54 -11.22 11.70 -43.93 -0.51 -11.73 16 15 C 0.08 1.12 5.19 -4.04 -0.02 1.09 16 16 N -0.60 -7.42 2.83 -181.57 -0.51 -7.93 16 17 C 0.07 0.60 10.29 59.84 0.62 1.21 16 18 C 0.52 7.23 7.26 -10.98 -0.08 7.15 16 19 O -0.51 -9.10 14.87 -20.22 -0.30 -9.40 16 20 C 0.04 0.43 3.77 36.01 0.14 0.57 16 21 O -0.28 -3.54 9.67 -39.48 -0.38 -3.92 16 22 C 0.13 1.30 6.69 -39.23 -0.26 1.03 16 23 C -0.18 -1.52 9.04 -39.44 -0.36 -1.88 16 24 C -0.11 -0.89 10.02 -39.53 -0.40 -1.29 16 25 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.36 16 27 C -0.11 -0.93 10.02 -39.54 -0.40 -1.33 16 28 C -0.12 -1.12 9.99 -39.44 -0.39 -1.52 16 29 H 0.03 0.98 7.43 -51.93 -0.39 0.60 16 30 H 0.04 1.10 7.20 -51.93 -0.37 0.73 16 31 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 34 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 35 H 0.36 6.92 8.45 45.56 0.39 7.30 16 36 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 37 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 40 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 41 H 0.09 0.62 6.91 -51.93 -0.36 0.26 16 42 H 0.09 0.82 7.64 -51.93 -0.40 0.42 16 43 H 0.14 0.81 6.30 -52.48 -0.33 0.48 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -35.23 386.46 -7.98 -43.21 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.89 Total: 3.71 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.28 Total: 6.50 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.45 Total: -49.63 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -1.20 Total: -25.05 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.23 -7.98 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486356592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.957 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds