Wall clock time and date at job start Tue Mar 31 2020 22:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 120.00227 * 2 1 4 4 H 1.08003 * 119.99772 * 202.68113 * 3 2 1 5 5 C 1.38812 * 119.99990 * 22.68159 * 3 2 1 6 6 N 1.31614 * 119.99759 * 11.49371 * 5 3 2 7 7 Si 1.86795 * 119.99700 * 191.49386 * 5 3 2 8 8 H 1.48501 * 109.47253 * 60.00404 * 7 5 3 9 9 H 1.48501 * 109.46811 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47227 * 299.99705 * 7 5 3 11 11 C 1.46504 * 119.99830 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46764 * 269.99531 * 11 2 1 13 13 H 1.09002 * 109.47316 * 304.99973 * 12 11 2 14 14 O 1.42899 * 109.46998 * 65.00122 * 12 11 2 15 15 C 1.53001 * 109.46925 * 184.99575 * 12 11 2 16 16 N 1.46507 * 109.46740 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00123 * 270.00000 * 16 15 12 18 18 C 1.34775 * 119.99556 * 90.00594 * 16 15 12 19 19 O 1.21286 * 120.00371 * 0.02562 * 18 16 15 20 20 C 1.50703 * 119.99612 * 179.97438 * 18 16 15 21 21 O 1.42899 * 109.46873 * 179.97438 * 20 18 16 22 22 C 1.35946 * 116.99790 * 180.02562 * 21 20 18 23 23 C 1.38699 * 120.03163 * 359.72597 * 22 21 20 24 24 C 1.38154 * 119.96865 * 179.79081 * 23 22 21 25 25 C 1.38456 * 120.02894 * 0.48335 * 24 23 22 26 26 F 1.35103 * 119.96502 * 179.72084 * 25 24 23 27 27 C 1.38450 * 120.06012 * 359.75051 * 25 24 23 28 28 C 1.38146 * 120.03342 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.46900 * 273.93208 * 1 2 3 30 30 H 1.09005 * 109.47119 * 33.92522 * 1 2 3 31 31 H 1.08995 * 109.47566 * 153.93361 * 1 2 3 32 32 H 0.97000 * 119.99952 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47341 * 149.99813 * 11 2 1 34 34 H 1.09003 * 109.47355 * 29.99169 * 11 2 1 35 35 H 0.96705 * 114.00547 * 59.99914 * 14 12 11 36 36 H 1.08993 * 109.47217 * 300.00379 * 15 12 11 37 37 H 1.09006 * 109.46921 * 60.00344 * 15 12 11 38 38 H 1.09004 * 109.47068 * 89.99998 * 17 16 15 39 39 H 1.08994 * 109.47416 * 210.00309 * 17 16 15 40 40 H 1.09007 * 109.47332 * 330.00607 * 17 16 15 41 41 H 1.08991 * 109.47219 * 299.99829 * 20 18 16 42 42 H 1.09000 * 109.46635 * 60.00499 * 20 18 16 43 43 H 1.08004 * 120.01419 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.98283 * 180.20983 * 24 23 22 45 45 H 1.08009 * 119.98130 * 179.97438 * 27 25 24 46 46 H 1.07999 * 120.01946 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1671 1.2220 -0.3607 5 6 1.5362 2.3416 0.4636 6 7 0.3913 2.2656 1.1082 7 14 2.3357 4.0045 0.1724 8 1 2.4797 4.2357 -1.2875 9 1 1.4874 5.0715 0.7616 10 1 3.6756 4.0284 0.8120 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9643 -0.9139 1.9812 14 8 1.2061 -1.9943 2.0806 15 6 3.3237 -2.9688 1.4431 16 7 3.5684 -3.3918 2.8243 17 6 4.7332 -2.8812 3.5513 18 6 2.7219 -4.2508 3.4259 19 8 1.7578 -4.6740 2.8238 20 6 2.9739 -4.6864 4.8464 21 8 1.9460 -5.5903 5.2568 22 6 2.0247 -6.0808 6.5223 23 6 3.0727 -5.7039 7.3489 24 6 3.1490 -6.1997 8.6362 25 6 2.1854 -7.0803 9.0978 26 9 2.2644 -7.5688 10.3549 27 6 1.1414 -7.4611 8.2720 28 6 1.0601 -6.9632 6.9859 29 1 -0.3633 0.0705 1.0253 30 1 -0.3633 0.8528 -0.5736 31 1 -0.3634 -0.9231 -0.4515 32 1 -0.0373 3.0731 1.4325 33 1 3.1498 -1.1383 -0.5143 34 1 1.6083 -2.0283 -0.5146 35 1 0.6954 -2.6956 1.6532 36 1 2.8119 -3.7657 0.9038 37 1 4.2745 -2.7526 0.9558 38 1 4.4621 -1.9634 4.0731 39 1 5.0652 -3.6259 4.2746 40 1 5.5390 -2.6742 2.8470 41 1 3.9416 -5.1841 4.9075 42 1 2.9720 -3.8139 5.4997 43 1 3.8271 -5.0208 6.9875 44 1 3.9631 -5.9038 9.2812 45 1 0.3906 -8.1484 8.6332 46 1 0.2458 -7.2608 6.3419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486356592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:45 Heat of formation + Delta-G solvation = -125.509750 kcal Electronic energy + Delta-G solvation = -29330.099304 eV Core-core repulsion = 24942.401134 eV Total energy + Delta-G solvation = -4387.698169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.82813 -41.53900 -40.58292 -38.80583 -38.03199 -36.75503 -36.08758 -33.28070 -32.37304 -31.69530 -30.66874 -29.18708 -28.06807 -27.77958 -26.44984 -24.26366 -23.67696 -23.05883 -22.19712 -20.44618 -19.56813 -18.77400 -18.42740 -18.15177 -17.72439 -17.57758 -17.26278 -16.64359 -16.58597 -16.46203 -16.20241 -15.93571 -15.64662 -15.41611 -15.04282 -14.87989 -14.66805 -14.53254 -14.11965 -14.01295 -13.95102 -13.64398 -13.38489 -13.29558 -13.21445 -13.07421 -12.75145 -12.60581 -12.49379 -12.15033 -12.02230 -11.99768 -11.94840 -11.90322 -11.78163 -11.21218 -10.82696 -10.56768 -10.20577 -9.62435 -9.16457 -8.67663 -7.78952 -5.27454 0.14036 0.16902 1.43772 1.46253 1.49995 1.56093 1.61110 2.48517 2.53215 2.54368 3.29486 3.33130 3.40044 3.63221 3.70576 3.77478 3.79007 3.91855 4.06099 4.15132 4.15706 4.26818 4.30867 4.31234 4.50467 4.56125 4.59951 4.68749 4.75477 4.86742 4.88792 4.94960 5.00645 5.09088 5.12804 5.18632 5.30156 5.33836 5.46231 5.64739 5.66535 5.79455 6.21164 6.34605 6.38396 6.97032 7.13882 7.16889 7.89902 8.35473 9.24419 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002055 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.061840 B =13618.937682 C =13861.409563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.610 5.610 3 C -0.261 4.261 4 H 0.078 0.922 5 C -0.060 4.060 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.271 1.271 11 C 0.121 3.879 12 C 0.080 3.920 13 H 0.067 0.933 14 O -0.566 6.566 15 C 0.094 3.906 16 N -0.604 5.604 17 C 0.064 3.936 18 C 0.510 3.490 19 O -0.563 6.563 20 C 0.044 3.956 21 O -0.314 6.314 22 C 0.106 3.894 23 C -0.179 4.179 24 C -0.109 4.109 25 C 0.040 3.960 26 F -0.149 7.149 27 C -0.111 4.111 28 C -0.134 4.134 29 H -0.001 1.001 30 H 0.012 0.988 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.367 0.633 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.250 -19.626 12.442 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.333 5.333 3 C -0.392 4.392 4 H 0.096 0.904 5 C -0.254 4.254 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.197 1.197 11 C -0.006 4.006 12 C 0.017 3.983 13 H 0.085 0.915 14 O -0.371 6.371 15 C -0.030 4.030 16 N -0.337 5.337 17 C -0.078 4.078 18 C 0.298 3.702 19 O -0.442 6.442 20 C -0.034 4.034 21 O -0.227 6.227 22 C 0.061 3.939 23 C -0.198 4.198 24 C -0.128 4.128 25 C 0.021 3.979 26 F -0.128 7.128 27 C -0.130 4.130 28 C -0.153 4.153 29 H 0.018 0.982 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.214 0.786 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.183 0.817 44 H 0.179 0.821 45 H 0.177 0.823 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.726 -19.293 12.461 25.787 hybrid contribution -0.240 0.882 -0.080 0.917 sum 11.485 -18.411 12.381 24.983 Atomic orbital electron populations 1.20417 0.83133 0.95114 0.97137 1.44058 1.01936 1.01630 1.85664 1.19560 0.98545 0.86469 1.34583 0.90417 1.25898 0.98562 1.02193 0.98794 1.70294 1.19773 1.27310 1.41271 0.85287 0.77689 0.79287 0.77831 1.20336 1.22649 1.19672 1.21663 0.97012 0.87497 0.94449 1.23004 0.84220 0.95247 0.95839 0.91511 1.86589 1.33600 1.59810 1.57136 1.22256 1.01857 0.96458 0.82402 1.47708 1.26807 1.44663 1.14518 1.22205 0.86850 1.00372 0.98346 1.20467 0.82368 0.78885 0.88454 1.90677 1.29809 1.57057 1.66618 1.22716 0.92456 0.94991 0.93200 1.86154 1.49230 1.59700 1.27658 1.19339 0.95768 0.94896 0.83910 1.21403 0.99742 1.04423 0.94216 1.21220 0.99038 0.96130 0.96411 1.17841 0.98981 1.00422 0.80698 1.91477 1.96351 1.86805 1.38132 1.21143 0.98237 1.00904 0.92695 1.20481 0.99916 0.98707 0.96183 0.98239 0.96922 0.96004 0.94631 0.91217 0.92517 0.78621 0.90277 0.86585 0.92776 0.87895 0.88597 0.85226 0.87128 0.81683 0.82097 0.82323 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.82 8.61 127.77 1.10 10.92 16 2 N -0.61 -30.81 2.89 -726.92 -2.10 -32.91 16 3 C -0.26 -14.21 9.67 84.03 0.81 -13.40 16 4 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 5 C -0.06 -3.39 5.12 84.86 0.43 -2.96 16 6 N -0.94 -57.68 10.61 21.65 0.23 -57.45 16 7 Si 0.97 45.11 29.57 68.60 2.03 47.14 16 8 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 9 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.12 4.62 5.37 86.38 0.46 5.08 16 12 C 0.08 2.84 3.48 30.60 0.11 2.94 16 13 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 14 O -0.57 -23.82 11.70 -140.66 -1.65 -25.47 16 15 C 0.09 2.36 5.19 86.38 0.45 2.81 16 16 N -0.60 -13.49 2.83 -846.74 -2.39 -15.89 16 17 C 0.06 0.83 10.29 127.77 1.31 2.14 16 18 C 0.51 13.48 7.26 87.66 0.64 14.12 16 19 O -0.56 -20.13 14.87 21.59 0.32 -19.80 16 20 C 0.04 0.79 3.77 71.24 0.27 1.06 16 21 O -0.31 -7.59 9.67 -73.90 -0.71 -8.30 16 22 C 0.11 2.07 6.69 22.49 0.15 2.22 16 23 C -0.18 -2.49 9.04 22.36 0.20 -2.29 16 24 C -0.11 -1.49 10.02 22.30 0.22 -1.27 16 25 C 0.04 0.67 7.30 22.37 0.16 0.83 16 26 F -0.15 -2.73 17.27 44.97 0.78 -1.96 16 27 C -0.11 -1.78 10.02 22.30 0.22 -1.55 16 28 C -0.13 -2.48 9.99 22.36 0.22 -2.26 16 29 H 0.00 -0.04 7.43 -2.39 -0.02 -0.06 16 30 H 0.01 0.69 7.20 -2.38 -0.02 0.67 16 31 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 32 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.07 2.38 8.03 -2.39 -0.02 2.36 16 34 H 0.06 1.98 7.87 -2.39 -0.02 1.96 16 35 H 0.37 14.37 8.45 -74.05 -0.63 13.74 16 36 H 0.08 2.10 7.42 -2.39 -0.02 2.08 16 37 H 0.12 2.16 7.89 -2.38 -0.02 2.14 16 38 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.10 0.57 6.44 -2.39 -0.02 0.56 16 40 H 0.10 0.93 7.89 -2.38 -0.02 0.91 16 41 H 0.13 1.23 6.91 -2.39 -0.02 1.21 16 42 H 0.11 1.60 7.64 -2.39 -0.02 1.58 16 43 H 0.17 1.25 6.30 -2.91 -0.02 1.23 16 44 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 45 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -79.89 386.46 3.65 -76.24 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.38 Total: 19.99 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.77 Total: 18.40 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -4.26 Total: -106.25 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -2.04 Total: -53.57 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.89 3.65 -76.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486356592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.266 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds