Wall clock time and date at job start Tue Mar 31 2020 22:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99815 * 2 1 4 4 C 1.52996 * 109.47067 * 125.00292 * 3 2 1 5 5 C 1.50700 * 109.47067 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99790 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00175 * 179.97438 * 5 4 3 8 8 C 1.47431 * 125.64670 * 5.03257 * 7 5 4 9 9 C 1.54908 * 104.83034 * 204.09334 * 8 7 5 10 10 C 1.55159 * 101.58325 * 322.99109 * 9 8 7 11 11 C 1.47020 * 125.64948 * 184.99191 * 7 5 4 12 12 H 1.08995 * 109.88389 * 59.40091 * 11 7 5 13 13 C 1.53004 * 109.88311 * 298.38927 * 11 7 5 14 14 N 1.46501 * 109.47075 * 174.16030 * 13 11 7 15 15 C 1.46496 * 119.99903 * 95.45593 * 14 13 11 16 16 C 1.34779 * 119.99757 * 275.45282 * 14 13 11 17 17 O 1.21275 * 120.00403 * 0.02562 * 16 14 13 18 18 C 1.50698 * 119.99463 * 180.02562 * 16 14 13 19 19 S 1.81004 * 109.46813 * 180.02562 * 18 16 14 20 20 C 1.76205 * 99.99782 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00226 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99854 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47229 * 90.00177 * 24 22 20 26 26 H 1.48502 * 109.47284 * 210.00041 * 24 22 20 27 27 H 1.48504 * 109.46942 * 330.00366 * 24 22 20 28 28 H 1.07996 * 120.00490 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00012 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00064 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47356 * 4.99484 * 3 2 1 32 32 H 1.09001 * 109.46862 * 244.99700 * 3 2 1 33 33 H 1.09002 * 109.47410 * 59.99939 * 4 3 2 34 34 H 1.09001 * 109.46796 * 299.99448 * 4 3 2 35 35 H 1.09000 * 110.36665 * 322.92883 * 8 7 5 36 36 H 1.08999 * 110.36773 * 85.25508 * 8 7 5 37 37 H 1.09000 * 111.00594 * 81.05991 * 9 8 7 38 38 H 1.09000 * 111.00326 * 204.87995 * 9 8 7 39 39 H 1.08998 * 110.71845 * 277.13904 * 10 9 8 40 40 H 1.09003 * 110.72311 * 153.86508 * 10 9 8 41 41 H 1.08998 * 109.47153 * 294.16451 * 13 11 7 42 42 H 1.09007 * 109.46608 * 54.15968 * 13 11 7 43 43 H 1.09013 * 109.47061 * 89.99770 * 15 14 13 44 44 H 1.09001 * 109.47259 * 209.99683 * 15 14 13 45 45 H 1.08994 * 109.47096 * 330.00154 * 15 14 13 46 46 H 1.08996 * 109.47219 * 300.00203 * 18 16 14 47 47 H 1.09000 * 109.47135 * 60.00128 * 18 16 14 48 48 H 0.96994 * 119.99412 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5694 3.4648 0.3215 7 7 4.7043 2.8876 2.1383 8 6 5.1430 1.9371 3.1765 9 6 5.6709 2.8259 4.3302 10 6 6.3498 3.9811 3.5480 11 6 5.4326 4.1520 2.3187 12 1 4.7271 4.9650 2.4898 13 6 6.2764 4.4482 1.0772 14 7 6.8876 5.7732 1.2069 15 6 8.2520 5.9030 1.7241 16 6 6.1946 6.8728 0.8503 17 8 5.0649 6.7654 0.4225 18 6 6.8236 8.2358 0.9832 19 16 5.6507 9.4981 0.4288 20 6 6.6179 10.9483 0.6860 21 1 7.6203 10.8662 1.0794 22 6 6.0918 12.1963 0.3821 23 7 4.8702 12.2964 -0.0978 24 14 7.1174 13.7337 0.6541 25 1 7.8921 14.0360 -0.5762 26 1 6.2226 14.8763 0.9688 27 1 8.0527 13.5109 1.7858 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5066 1.0920 34 1 2.4772 1.2356 2.1129 35 1 4.3022 1.3329 3.5173 36 1 5.9396 1.2989 2.7943 37 1 4.8502 3.1986 4.9432 38 1 6.3964 2.2860 4.9387 39 1 7.3571 3.6994 3.2414 40 1 6.3681 4.8928 4.1452 41 1 7.0584 3.6950 0.9813 42 1 5.6404 4.4263 0.1921 43 1 8.9602 5.8582 0.8965 44 1 8.3559 6.8577 2.2398 45 1 8.4554 5.0898 2.4207 46 1 7.0843 8.4155 2.0261 47 1 7.7239 8.2817 0.3705 48 1 4.5024 13.1686 -0.3098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486540819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:14 Heat of formation + Delta-G solvation = -50.411300 kcal Electronic energy + Delta-G solvation = -27359.185241 eV Core-core repulsion = 23540.956761 eV Total energy + Delta-G solvation = -3818.228480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57849 -39.18978 -37.73340 -35.56143 -35.19651 -32.39032 -32.16729 -31.31174 -30.46244 -28.72001 -27.02189 -25.52723 -25.25568 -24.57101 -22.65004 -21.32090 -20.04944 -19.31239 -18.89324 -17.61085 -17.27840 -16.79704 -16.29388 -15.95660 -15.57324 -15.45120 -15.03453 -14.77206 -14.69870 -14.00582 -13.88659 -13.72736 -13.56547 -13.36717 -13.07068 -12.93506 -12.63374 -12.58189 -12.50752 -12.36379 -12.18213 -12.03847 -11.79913 -11.54987 -11.31592 -11.27543 -11.09753 -11.03217 -10.98461 -10.88288 -10.71872 -9.87250 -9.76669 -9.57399 -9.23795 -9.03107 -9.00477 -8.31645 -8.16125 -6.45102 -6.17552 -3.87799 1.97511 2.56052 2.66789 3.10380 3.18537 3.24504 3.30005 3.33845 3.69885 4.12801 4.22571 4.23988 4.52091 4.54451 4.64795 4.81676 4.83906 4.93699 4.98291 5.01220 5.04469 5.12553 5.16978 5.18898 5.23729 5.30795 5.40042 5.44295 5.52482 5.57670 5.61321 5.63800 5.70905 5.71510 5.75675 5.88749 5.95358 5.96328 6.05912 6.17949 6.27016 6.34928 6.49565 6.72218 7.38005 7.61435 7.63579 8.11523 8.38859 8.68307 9.27275 10.89833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002396 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.392728 B =11684.855291 C =13059.263863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.082 4.082 4 C -0.128 4.128 5 C 0.519 3.481 6 O -0.514 6.514 7 N -0.619 5.619 8 C 0.100 3.900 9 C -0.134 4.134 10 C -0.126 4.126 11 C 0.122 3.878 12 H 0.083 0.917 13 C 0.111 3.889 14 N -0.623 5.623 15 C 0.079 3.921 16 C 0.527 3.473 17 O -0.501 6.501 18 C -0.148 4.148 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -27.972 9.367 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.120 4.120 4 C -0.168 4.168 5 C 0.308 3.692 6 O -0.389 6.389 7 N -0.355 5.355 8 C -0.023 4.023 9 C -0.172 4.172 10 C -0.164 4.164 11 C 0.018 3.982 12 H 0.101 0.899 13 C -0.013 4.013 14 N -0.360 5.360 15 C -0.065 4.065 16 C 0.314 3.686 17 O -0.373 6.373 18 C -0.299 4.299 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.099 -27.564 8.111 28.754 hybrid contribution 2.136 1.011 0.826 2.504 sum 3.235 -26.553 8.937 28.203 Atomic orbital electron populations 1.23907 0.96023 1.01957 1.01045 1.22952 0.96077 0.98230 1.00021 1.20537 0.97940 0.95518 0.98005 1.21589 0.98775 0.95297 1.01134 1.20485 0.79008 0.89290 0.80442 1.90840 1.64565 1.47832 1.35635 1.48572 1.41006 1.14775 1.31158 1.22326 0.99520 0.92344 0.88119 1.22789 1.00868 0.96694 0.96844 1.22770 0.98512 0.99479 0.95678 1.22019 0.93933 0.86935 0.95322 0.89861 1.21688 0.96752 0.83618 0.99222 1.47794 1.15492 1.05917 1.66809 1.21832 0.82756 1.02963 0.98922 1.20384 0.85977 0.85344 0.76863 1.90768 1.17836 1.85982 1.42749 1.23551 1.05198 0.96309 1.04853 1.85476 1.18504 0.95387 1.84105 1.22861 1.02833 0.92313 1.50258 0.90993 1.25000 0.95300 0.98716 0.94648 1.70030 1.14330 1.24956 1.40926 0.86174 0.79554 0.81166 0.78623 1.20293 1.20776 1.19724 0.88390 0.88553 0.87436 0.90470 0.90052 0.89077 0.89010 0.90522 0.91307 0.90449 0.89759 0.90455 0.89833 0.91097 0.88529 0.92831 0.90623 0.91456 0.89392 0.89391 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 14.32 29.01 0.42 -1.02 16 2 C -0.15 -1.17 9.52 -36.03 -0.34 -1.51 16 3 C -0.08 -0.78 4.95 -27.89 -0.14 -0.92 16 4 C -0.13 -1.06 4.61 -27.89 -0.13 -1.19 16 5 C 0.52 6.56 7.66 -10.99 -0.08 6.48 16 6 O -0.51 -9.24 14.76 5.56 0.08 -9.16 16 7 N -0.62 -6.64 3.07 -163.01 -0.50 -7.14 16 8 C 0.10 0.63 6.74 -2.53 -0.02 0.61 16 9 C -0.13 -0.80 7.08 -24.58 -0.17 -0.97 16 10 C -0.13 -1.04 5.67 -24.89 -0.14 -1.18 16 11 C 0.12 1.52 3.10 -66.95 -0.21 1.31 16 12 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.11 1.54 4.79 -4.04 -0.02 1.52 16 14 N -0.62 -9.27 2.76 -181.57 -0.50 -9.77 16 15 C 0.08 0.82 9.95 59.84 0.60 1.41 16 16 C 0.53 10.65 7.65 -10.99 -0.08 10.57 16 17 O -0.50 -12.46 15.53 5.56 0.09 -12.37 16 18 C -0.15 -3.13 4.71 36.00 0.17 -2.96 16 19 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.71 13.22 55.49 0.73 -25.97 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 29 H 0.10 0.58 8.06 -52.48 -0.42 0.15 16 30 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.08 0.87 7.75 -51.93 -0.40 0.46 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.63 7.95 -51.93 -0.41 0.21 16 35 H 0.08 0.36 7.47 -51.93 -0.39 -0.03 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.53 6.33 -51.93 -0.33 0.20 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.10 1.75 5.98 -51.93 -0.31 1.43 16 43 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 44 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 45 H 0.07 0.50 6.17 -51.93 -0.32 0.18 16 46 H 0.09 1.69 7.40 -51.92 -0.38 1.31 16 47 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 48 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -38.22 403.21 -9.11 -47.33 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.89 Total: -0.69 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.27 Total: -42.88 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.22 -9.11 -47.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486540819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.085 kcal (2) G-P(sol) polarization free energy of solvation -38.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds