Wall clock time and date at job start Tue Mar 31 2020 22:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.08998 * 109.49329 * 55.00520 * 4 3 2 6 6 C 1.53034 * 109.49910 * 175.06413 * 4 3 2 7 7 C 1.53035 * 109.53986 * 181.28745 * 6 4 3 8 8 C 1.53195 * 109.34277 * 298.68459 * 7 6 4 9 9 N 1.46927 * 108.77373 * 54.61657 * 8 7 6 10 10 C 1.34776 * 120.62992 * 126.36889 * 9 8 7 11 11 O 1.21285 * 119.99986 * 180.02562 * 10 9 8 12 12 C 1.50699 * 119.99923 * 0.02562 * 10 9 8 13 13 S 1.81007 * 109.46974 * 179.97438 * 12 10 9 14 14 C 1.76192 * 99.99793 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00220 * 359.97438 * 14 13 12 16 16 C 1.38804 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99355 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00360 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47038 * 59.99809 * 18 16 14 20 20 H 1.48504 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47227 * 299.99802 * 18 16 14 22 22 C 1.46928 * 118.74015 * 306.39727 * 9 8 7 23 23 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 24 24 O 1.21283 * 119.99750 * 180.02562 * 23 2 1 25 25 C 1.50702 * 119.99928 * 0.28128 * 23 2 1 26 26 C 1.52999 * 117.49844 * 248.46973 * 25 23 2 27 27 C 1.52996 * 117.49546 * 179.81078 * 25 23 2 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 1.08996 * 109.46654 * 301.34209 * 6 4 3 34 34 H 1.09005 * 109.46028 * 61.30416 * 6 4 3 35 35 H 1.09003 * 109.49879 * 178.72144 * 7 6 4 36 36 H 1.09000 * 109.49906 * 58.65771 * 7 6 4 37 37 H 1.08998 * 109.58541 * 294.83505 * 8 7 6 38 38 H 1.08992 * 109.59178 * 174.40392 * 8 7 6 39 39 H 1.08994 * 109.47253 * 299.99663 * 12 10 9 40 40 H 1.08999 * 109.46855 * 60.00140 * 12 10 9 41 41 H 0.97002 * 119.99474 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.58475 * 293.81957 * 22 9 8 43 43 H 1.08996 * 109.70379 * 173.46073 * 22 9 8 44 44 H 1.08995 * 115.54871 * 34.13521 * 25 23 2 45 45 H 1.09007 * 117.49732 * 359.97438 * 26 25 23 46 46 H 1.08998 * 117.49972 * 145.01907 * 26 25 23 47 47 H 1.09004 * 117.49547 * 214.97632 * 27 25 23 48 48 H 1.08995 * 117.50518 * 359.97085 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5065 1.7550 -1.9820 6 6 3.1076 3.0934 -1.4451 7 6 3.3339 3.5499 -2.8881 8 6 4.2763 2.5666 -3.5895 9 7 3.7231 1.2111 -3.4651 10 6 3.5292 0.4457 -4.5574 11 8 3.0715 -0.6714 -4.4415 12 6 3.8812 0.9780 -5.9226 13 16 3.5092 -0.2763 -7.1735 14 6 4.0029 0.5866 -8.6281 15 1 4.3952 1.5901 -8.5539 16 6 3.8867 -0.0229 -9.8698 17 7 3.4080 -1.2458 -9.9603 18 14 4.4094 0.8921 -11.4121 19 1 5.8499 1.2403 -11.3168 20 1 4.1869 0.0284 -12.5994 21 1 3.6077 2.1348 -11.5461 22 6 3.3848 0.7061 -2.1275 23 6 2.1390 -1.1672 0.0005 24 8 3.3518 -1.1671 0.0010 25 6 1.3855 -2.4723 -0.0053 26 6 1.4583 -3.3357 1.2557 27 6 2.2077 -3.7626 -0.0089 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 2.4566 3.8046 -0.9366 34 1 4.0650 3.0428 -0.9264 35 1 3.7797 4.5447 -2.8894 36 1 2.3799 3.5781 -3.4146 37 1 5.2592 2.6046 -3.1201 38 1 4.3618 2.8310 -4.6434 39 1 3.2978 1.8764 -6.1238 40 1 4.9435 1.2196 -5.9555 41 1 3.3271 -1.6719 -10.8280 42 1 4.2951 0.5924 -1.5389 43 1 2.8832 -0.2576 -2.2145 44 1 0.4480 -2.4713 -0.5611 45 1 2.0516 -2.9598 2.0894 46 1 0.5688 -3.9030 1.5293 47 1 1.8108 -4.6107 -0.5668 48 1 3.2935 -3.6675 -0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493722935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:48 Heat of formation + Delta-G solvation = -46.266053 kcal Electronic energy + Delta-G solvation = -27997.913242 eV Core-core repulsion = 24179.864513 eV Total energy + Delta-G solvation = -3818.048729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61569 -39.60506 -37.54021 -36.38221 -35.62316 -33.19679 -32.40143 -31.61066 -29.42915 -27.41153 -26.64700 -25.53615 -24.92470 -23.92131 -22.62366 -21.99553 -20.58430 -19.20442 -18.89832 -17.72354 -17.55434 -16.68939 -16.40231 -15.74830 -15.64372 -15.12851 -14.91119 -14.78006 -14.60978 -14.35983 -13.96085 -13.87861 -13.46149 -13.16219 -13.13985 -12.95248 -12.85850 -12.60450 -12.55728 -12.36211 -11.89352 -11.80242 -11.72092 -11.24877 -11.02975 -11.02493 -10.99268 -10.95195 -10.78082 -10.74809 -10.66723 -10.59991 -9.89824 -9.77661 -9.26763 -9.03404 -8.86464 -8.37649 -8.18599 -6.46509 -6.18761 -3.88965 2.34197 2.73314 3.02668 3.15671 3.24961 3.28194 3.31254 3.65698 3.66926 4.23001 4.24423 4.52682 4.55274 4.61294 4.67171 4.68291 4.78025 4.85174 4.94554 5.02413 5.08885 5.16007 5.21509 5.24358 5.29441 5.34755 5.41115 5.41541 5.50727 5.53150 5.61965 5.64401 5.74506 5.75737 5.78284 5.84625 5.93781 5.95920 5.97389 6.12899 6.16227 6.24347 6.32295 6.77310 7.12440 7.61538 7.69678 8.02798 8.37624 8.67670 9.26148 10.88629 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002793 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.250595 B =10023.441806 C =11471.809863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.123 3.877 4 C -0.120 4.120 5 H 0.075 0.925 6 C -0.110 4.110 7 C -0.134 4.134 8 C 0.106 3.894 9 N -0.620 5.620 10 C 0.533 3.467 11 O -0.517 6.517 12 C -0.150 4.150 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.128 3.872 23 C 0.545 3.455 24 O -0.531 6.531 25 C -0.196 4.196 26 C -0.154 4.154 27 C -0.145 4.145 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 6.974 24.831 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.349 5.349 3 C 0.000 4.000 4 C -0.140 4.140 5 H 0.094 0.906 6 C -0.148 4.148 7 C -0.172 4.172 8 C -0.017 4.017 9 N -0.356 5.356 10 C 0.321 3.679 11 O -0.392 6.392 12 C -0.300 4.300 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.200 1.200 22 C 0.005 3.995 23 C 0.334 3.666 24 O -0.407 6.407 25 C -0.217 4.217 26 C -0.191 4.191 27 C -0.182 4.182 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.143 0.857 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.889 5.150 24.875 26.077 hybrid contribution 0.639 2.105 -1.256 2.534 sum -5.250 7.256 23.619 25.260 Atomic orbital electron populations 1.21825 0.79280 1.03572 1.01722 1.47742 1.07131 1.05831 1.74163 1.21498 0.97903 0.84421 0.96162 1.21981 1.00015 0.95816 0.96223 0.90618 1.21488 1.00945 0.95421 0.96994 1.21901 1.00667 0.98700 0.95926 1.21714 0.96330 0.81602 1.02083 1.48140 1.65331 1.15642 1.06536 1.20316 0.77139 0.85069 0.85363 1.90683 1.43363 1.19135 1.85998 1.23549 1.04346 1.05775 0.96335 1.85395 1.84033 1.18178 0.95829 1.22824 1.49508 1.03468 0.92514 0.91048 1.24990 0.94832 0.95059 0.98701 1.70018 1.42526 1.12393 1.25377 0.86231 0.79122 0.79311 0.80870 1.19943 1.20816 1.19966 1.21528 0.98437 0.97478 0.82022 1.19665 0.87365 0.84380 0.75212 1.90705 1.13721 1.87131 1.49182 1.22234 1.03003 0.90920 1.05514 1.22925 1.03215 1.01609 0.91356 1.22976 1.00201 0.95413 0.99636 0.92496 0.91000 0.90676 0.90194 0.89594 0.91648 0.91519 0.90616 0.91350 0.91600 0.89296 0.89411 0.89370 0.92167 0.91431 0.89288 0.85717 0.88479 0.87906 0.87753 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.27 59.85 0.61 1.14 16 2 N -0.62 -6.05 2.77 -181.57 -0.50 -6.55 16 3 C 0.12 1.11 5.00 -4.04 -0.02 1.09 16 4 C -0.12 -1.27 2.54 -90.50 -0.23 -1.50 16 5 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.11 -0.93 5.17 -26.70 -0.14 -1.07 16 7 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 8 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 9 N -0.62 -9.95 2.97 -172.77 -0.51 -10.47 16 10 C 0.53 11.05 7.72 -10.99 -0.08 10.96 16 11 O -0.52 -12.75 15.28 5.55 0.08 -12.66 16 12 C -0.15 -3.21 4.50 36.00 0.16 -3.04 16 13 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 14 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 17 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 18 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.13 1.91 4.33 -3.71 -0.02 1.89 16 23 C 0.55 6.76 6.12 -10.98 -0.07 6.69 16 24 O -0.53 -8.36 13.97 5.55 0.08 -8.28 16 25 C -0.20 -1.98 5.29 -91.77 -0.49 -2.47 16 26 C -0.15 -1.23 10.24 -26.69 -0.27 -1.51 16 27 C -0.14 -1.48 10.05 -26.70 -0.27 -1.75 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.07 0.48 5.99 -51.93 -0.31 0.17 16 31 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 39 H 0.09 1.73 7.69 -51.92 -0.40 1.33 16 40 H 0.09 1.77 7.94 -51.92 -0.41 1.36 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 43 H 0.09 1.62 5.42 -51.93 -0.28 1.34 16 44 H 0.13 1.08 6.44 -51.93 -0.33 0.75 16 45 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.11 1.30 7.67 -51.93 -0.40 0.90 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -37.01 394.20 -10.05 -47.06 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.84 Total: 0.95 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.79 Total: -2.91 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.28 Total: -42.82 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.16 Total: -20.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.01 -10.05 -47.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493722935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.793 kcal (2) G-P(sol) polarization free energy of solvation -37.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds