Wall clock time and date at job start Tue Mar 31 2020 22:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.08998 * 109.49329 * 55.00520 * 4 3 2 6 6 C 1.53034 * 109.49910 * 175.06413 * 4 3 2 7 7 C 1.53035 * 109.53986 * 181.28745 * 6 4 3 8 8 C 1.53195 * 109.34277 * 298.68459 * 7 6 4 9 9 N 1.46927 * 108.77373 * 54.61657 * 8 7 6 10 10 C 1.34776 * 120.62992 * 126.36889 * 9 8 7 11 11 O 1.21285 * 119.99986 * 180.02562 * 10 9 8 12 12 C 1.50699 * 119.99923 * 0.02562 * 10 9 8 13 13 S 1.81007 * 109.46974 * 179.97438 * 12 10 9 14 14 C 1.76192 * 99.99793 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00220 * 359.97438 * 14 13 12 16 16 C 1.38804 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99355 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00360 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47038 * 59.99809 * 18 16 14 20 20 H 1.48504 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47227 * 299.99802 * 18 16 14 22 22 C 1.46928 * 118.74015 * 306.39727 * 9 8 7 23 23 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 24 24 O 1.21283 * 119.99750 * 180.02562 * 23 2 1 25 25 C 1.50702 * 119.99928 * 0.28128 * 23 2 1 26 26 C 1.52999 * 117.49844 * 248.46973 * 25 23 2 27 27 C 1.52996 * 117.49546 * 179.81078 * 25 23 2 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 1.08996 * 109.46654 * 301.34209 * 6 4 3 34 34 H 1.09005 * 109.46028 * 61.30416 * 6 4 3 35 35 H 1.09003 * 109.49879 * 178.72144 * 7 6 4 36 36 H 1.09000 * 109.49906 * 58.65771 * 7 6 4 37 37 H 1.08998 * 109.58541 * 294.83505 * 8 7 6 38 38 H 1.08992 * 109.59178 * 174.40392 * 8 7 6 39 39 H 1.08994 * 109.47253 * 299.99663 * 12 10 9 40 40 H 1.08999 * 109.46855 * 60.00140 * 12 10 9 41 41 H 0.97002 * 119.99474 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.58475 * 293.81957 * 22 9 8 43 43 H 1.08996 * 109.70379 * 173.46073 * 22 9 8 44 44 H 1.08995 * 115.54871 * 34.13521 * 25 23 2 45 45 H 1.09007 * 117.49732 * 359.97438 * 26 25 23 46 46 H 1.08998 * 117.49972 * 145.01907 * 26 25 23 47 47 H 1.09004 * 117.49547 * 214.97632 * 27 25 23 48 48 H 1.08995 * 117.50518 * 359.97085 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5065 1.7550 -1.9820 6 6 3.1076 3.0934 -1.4451 7 6 3.3339 3.5499 -2.8881 8 6 4.2763 2.5666 -3.5895 9 7 3.7231 1.2111 -3.4651 10 6 3.5292 0.4457 -4.5574 11 8 3.0715 -0.6714 -4.4415 12 6 3.8812 0.9780 -5.9226 13 16 3.5092 -0.2763 -7.1735 14 6 4.0029 0.5866 -8.6281 15 1 4.3952 1.5901 -8.5539 16 6 3.8867 -0.0229 -9.8698 17 7 3.4080 -1.2458 -9.9603 18 14 4.4094 0.8921 -11.4121 19 1 5.8499 1.2403 -11.3168 20 1 4.1869 0.0284 -12.5994 21 1 3.6077 2.1348 -11.5461 22 6 3.3848 0.7061 -2.1275 23 6 2.1390 -1.1672 0.0005 24 8 3.3518 -1.1671 0.0010 25 6 1.3855 -2.4723 -0.0053 26 6 1.4583 -3.3357 1.2557 27 6 2.2077 -3.7626 -0.0089 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 2.4566 3.8046 -0.9366 34 1 4.0650 3.0428 -0.9264 35 1 3.7797 4.5447 -2.8894 36 1 2.3799 3.5781 -3.4146 37 1 5.2592 2.6046 -3.1201 38 1 4.3618 2.8310 -4.6434 39 1 3.2978 1.8764 -6.1238 40 1 4.9435 1.2196 -5.9555 41 1 3.3271 -1.6719 -10.8280 42 1 4.2951 0.5924 -1.5389 43 1 2.8832 -0.2576 -2.2145 44 1 0.4480 -2.4713 -0.5611 45 1 2.0516 -2.9598 2.0894 46 1 0.5688 -3.9030 1.5293 47 1 1.8108 -4.6107 -0.5668 48 1 3.2935 -3.6675 -0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493722935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:47 Heat of formation + Delta-G solvation = -70.160471 kcal Electronic energy + Delta-G solvation = -27998.949381 eV Core-core repulsion = 24179.864513 eV Total energy + Delta-G solvation = -3819.084868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61150 -40.85319 -38.73409 -37.26595 -36.55490 -34.60546 -34.33314 -32.58374 -30.99239 -28.22197 -27.71751 -27.42824 -26.16056 -24.78830 -23.36039 -22.87167 -21.66659 -20.41649 -19.93486 -19.49441 -18.50342 -18.19512 -17.24760 -17.02344 -16.89125 -16.76213 -16.44146 -15.96092 -15.59559 -15.48019 -15.17352 -15.07938 -14.57500 -14.47758 -14.27628 -14.10652 -13.84430 -13.61942 -13.49538 -13.46044 -13.19289 -13.10599 -12.87720 -12.78416 -12.57128 -12.48044 -12.09352 -11.88628 -11.85242 -11.73656 -11.55844 -11.53790 -11.42716 -11.14427 -10.91593 -10.81885 -10.29872 -9.72961 -9.63170 -8.70832 -8.35903 -6.15439 1.22504 1.43049 1.43647 1.45418 1.52346 1.54210 1.99974 2.08212 2.25786 2.87850 2.97894 3.22247 3.49772 3.60757 3.73527 3.78167 3.80955 3.93215 3.94078 4.04514 4.11237 4.19213 4.22916 4.31133 4.36462 4.39304 4.50712 4.55765 4.62645 4.65393 4.68743 4.77792 4.83494 4.84669 4.91790 4.94408 5.02747 5.05108 5.12148 5.17492 5.18184 5.39295 5.41821 5.52932 5.56771 6.17840 6.27345 6.32801 7.04494 7.09599 7.15387 8.73339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002793 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.250595 B =10023.441806 C =11471.809863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.614 5.614 3 C 0.123 3.877 4 C -0.109 4.109 5 H 0.068 0.932 6 C -0.105 4.105 7 C -0.128 4.128 8 C 0.093 3.907 9 N -0.609 5.609 10 C 0.527 3.473 11 O -0.570 6.570 12 C -0.120 4.120 13 S -0.153 6.153 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.001 2.999 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.260 1.260 22 C 0.132 3.868 23 C 0.532 3.468 24 O -0.578 6.578 25 C -0.208 4.208 26 C -0.122 4.122 27 C -0.168 4.168 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.272 0.728 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.134 0.866 47 H 0.115 0.885 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 10.498 25.958 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.346 5.346 3 C 0.000 4.000 4 C -0.130 4.130 5 H 0.087 0.913 6 C -0.143 4.143 7 C -0.166 4.166 8 C -0.029 4.029 9 N -0.342 5.342 10 C 0.315 3.685 11 O -0.449 6.449 12 C -0.271 4.271 13 S 0.075 5.925 14 C -0.694 4.694 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.184 1.184 22 C 0.009 3.991 23 C 0.322 3.678 24 O -0.459 6.459 25 C -0.229 4.229 26 C -0.159 4.159 27 C -0.206 4.206 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.157 0.843 45 H 0.113 0.887 46 H 0.152 0.848 47 H 0.133 0.867 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.628 8.745 26.049 28.266 hybrid contribution 0.882 1.038 -1.485 2.015 sum -5.746 9.783 24.564 27.057 Atomic orbital electron populations 1.22064 0.77146 1.04216 1.03477 1.47902 1.08561 1.05418 1.72705 1.21612 0.98231 0.84966 0.95142 1.21925 0.98501 0.96046 0.96503 0.91338 1.21513 1.01822 0.94151 0.96830 1.21903 0.99646 0.99158 0.95856 1.22127 0.97954 0.79812 1.02966 1.48210 1.63688 1.16659 1.05693 1.20255 0.77185 0.84815 0.86220 1.90663 1.46133 1.21394 1.86692 1.23344 1.05505 1.03738 0.94521 1.85618 1.84854 1.22851 0.99220 1.23153 1.49715 1.03875 0.92678 0.89880 1.26171 0.94434 0.95931 1.02646 1.70192 1.43770 1.14406 1.26441 0.84974 0.79193 0.78037 0.75598 1.18678 1.20304 1.18434 1.21526 0.98722 0.97417 0.81387 1.20128 0.87082 0.85839 0.74744 1.90670 1.15679 1.87906 1.51618 1.22350 1.03130 0.89910 1.07514 1.23006 1.03321 0.99651 0.89911 1.22972 0.98921 0.96254 1.02410 0.90067 0.89735 0.90761 0.86231 0.90839 0.88362 0.90797 0.87444 0.92095 0.89859 0.89342 0.87303 0.87756 0.91948 0.92336 0.93168 0.84275 0.88717 0.84812 0.86707 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.27 127.77 1.31 2.13 16 2 N -0.61 -11.62 2.77 -846.74 -2.35 -13.97 16 3 C 0.12 2.00 5.00 86.38 0.43 2.44 16 4 C -0.11 -2.15 2.54 -10.72 -0.03 -2.18 16 5 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.11 -1.39 5.17 30.62 0.16 -1.23 16 7 C -0.13 -1.93 6.08 30.67 0.19 -1.75 16 8 C 0.09 2.05 6.34 86.36 0.55 2.60 16 9 N -0.61 -19.56 2.97 -818.92 -2.43 -22.00 16 10 C 0.53 22.57 7.72 87.66 0.68 23.25 16 11 O -0.57 -29.90 15.28 -3.04 -0.05 -29.94 16 12 C -0.12 -5.20 4.50 71.24 0.32 -4.88 16 13 S -0.15 -8.89 20.57 -56.49 -1.16 -10.05 16 14 C -0.55 -31.99 9.50 67.96 0.65 -31.35 16 15 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 16 C 0.01 0.75 5.49 84.86 0.47 1.21 16 17 N -0.91 -57.09 13.22 21.65 0.29 -56.81 16 18 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 C 0.13 4.03 4.33 86.36 0.37 4.40 16 23 C 0.53 13.73 6.12 87.66 0.54 14.27 16 24 O -0.58 -19.58 13.97 -3.04 -0.04 -19.62 16 25 C -0.21 -4.32 5.29 -11.54 -0.06 -4.38 16 26 C -0.12 -1.86 10.24 30.62 0.31 -1.55 16 27 C -0.17 -3.68 10.05 30.62 0.31 -3.37 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.76 8.07 -2.39 -0.02 0.74 16 30 H 0.07 0.86 5.99 -2.39 -0.01 0.84 16 31 H 0.12 1.04 8.07 -2.39 -0.02 1.02 16 32 H 0.07 1.42 7.42 -2.38 -0.02 1.40 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 1.97 5.93 -2.39 -0.01 1.95 16 39 H 0.11 4.22 7.69 -2.40 -0.02 4.20 16 40 H 0.10 4.15 7.94 -2.40 -0.02 4.13 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.06 1.89 7.74 -2.39 -0.02 1.87 16 43 H 0.05 1.95 5.42 -2.39 -0.01 1.94 16 44 H 0.14 2.40 6.44 -2.39 -0.02 2.38 16 45 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.08 2.20 7.67 -2.39 -0.02 2.18 16 Total: -1.00 -87.31 394.20 3.41 -83.90 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.95 Total: 22.70 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.19 Total: -0.39 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -4.50 Total: -92.77 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.09 Total: -49.56 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -87.31 3.41 -83.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493722935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.741 kcal (2) G-P(sol) polarization free energy of solvation -87.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds