Wall clock time and date at job start Tue Mar 31 2020 23:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47422 * 270.00245 * 3 2 1 5 5 H 1.48506 * 109.47060 * 29.99734 * 3 2 1 6 6 H 1.48501 * 109.47304 * 150.00047 * 3 2 1 7 7 C 1.38808 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00799 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64711 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27119 * 178.97411 * 10 9 7 12 12 C 1.55154 * 102.94145 * 337.80606 * 11 10 9 13 13 H 1.08991 * 111.00597 * 277.39039 * 12 11 10 14 14 C 1.53005 * 111.00263 * 153.57383 * 12 11 10 15 15 C 1.52992 * 109.47277 * 178.18001 * 14 12 11 16 16 N 1.46499 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.34784 * 119.99971 * 180.02562 * 16 15 14 18 18 O 1.21547 * 119.99723 * 359.72726 * 17 16 15 19 19 C 1.47857 * 119.99744 * 179.97438 * 17 16 15 20 20 C 1.40622 * 119.75745 * 359.73113 * 19 17 16 21 21 C 1.35728 * 120.83409 * 179.74750 * 20 19 17 22 22 C 1.40705 * 120.08420 * 0.51837 * 21 20 19 23 23 N 1.33798 * 120.86091 * 179.73998 * 22 21 20 24 24 C 1.31332 * 119.76266 * 180.02562 * 23 22 21 25 25 C 1.39750 * 120.71247 * 359.97438 * 24 23 22 26 26 N 1.31277 * 120.67354 * 359.97438 * 25 24 23 27 27 C 1.33826 * 119.73619 * 0.02562 * 26 25 24 28 28 C 1.38414 * 119.75703 * 179.97438 * 19 17 16 29 29 C 1.47467 * 125.63269 * 179.97438 * 9 7 2 30 30 H 0.96997 * 120.00404 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88105 * 59.55998 * 10 9 7 32 32 H 1.08992 * 110.01181 * 298.46617 * 10 9 7 33 33 H 1.08998 * 110.71680 * 219.44519 * 11 10 9 34 34 H 1.09003 * 110.86855 * 96.24525 * 11 10 9 35 35 H 1.09004 * 109.46840 * 58.17824 * 14 12 11 36 36 H 1.09005 * 109.47310 * 298.18214 * 14 12 11 37 37 H 1.09004 * 109.47330 * 60.00123 * 15 14 12 38 38 H 1.09005 * 109.47124 * 300.00327 * 15 14 12 39 39 H 0.96999 * 119.99984 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.58202 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.95574 * 180.25959 * 21 20 19 42 42 H 1.07998 * 119.64283 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.66180 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.24554 * 0.02562 * 28 19 17 45 45 H 1.08998 * 110.34986 * 85.24833 * 29 9 7 46 46 H 1.09000 * 110.40421 * 322.91417 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1375 -2.5328 -0.0017 11 6 -0.4483 -4.0442 -0.0295 12 6 0.8521 -4.6557 -0.6145 13 1 0.8568 -4.5958 -1.7028 14 6 1.0372 -6.1008 -0.1469 15 6 2.3028 -6.6832 -0.7789 16 7 2.4797 -8.0670 -0.3317 17 6 3.5358 -8.7848 -0.7630 18 8 4.3386 -8.2857 -1.5270 19 6 3.7146 -10.1813 -0.3111 20 6 2.7829 -10.7534 0.5732 21 6 2.9230 -12.0349 0.9980 22 6 4.0162 -12.8065 0.5631 23 7 4.1723 -14.0696 0.9761 24 6 5.2011 -14.7701 0.5570 25 6 6.1367 -14.2110 -0.3178 26 7 6.0050 -12.9743 -0.7380 27 6 4.9651 -12.2401 -0.3251 28 6 4.8006 -10.9141 -0.7576 29 6 1.9342 -3.7313 -0.0028 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5575 -2.0517 -0.8850 32 1 -0.5567 -2.0845 0.8990 33 1 -1.2983 -4.2511 -0.6797 34 1 -0.6333 -4.4211 0.9765 35 1 0.1740 -6.6938 -0.4492 36 1 1.1304 -6.1222 0.9390 37 1 3.1660 -6.0901 -0.4766 38 1 2.2096 -6.6618 -1.8648 39 1 1.8373 -8.4663 0.2755 40 1 1.9428 -10.1672 0.9152 41 1 2.1967 -12.4614 1.6739 42 1 5.3254 -15.7893 0.8919 43 1 6.9766 -14.8023 -0.6514 44 1 5.5163 -10.4694 -1.4334 45 1 2.1677 -4.0425 1.0154 46 1 2.8333 -3.7406 -0.6189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494078728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:07 Heat of formation + Delta-G solvation = 29.347895 kcal Electronic energy + Delta-G solvation = -27411.177405 eV Core-core repulsion = 23493.256343 eV Total energy + Delta-G solvation = -3917.921062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49244 -40.98843 -39.41503 -38.13083 -36.57285 -35.85747 -34.79406 -32.83055 -31.86324 -31.70338 -30.63958 -28.35452 -26.99813 -26.14704 -25.57247 -23.90448 -23.20187 -22.40356 -21.81522 -21.01034 -19.78768 -19.38715 -18.85627 -18.19414 -17.49389 -16.99100 -16.86171 -16.63070 -16.33060 -16.04138 -15.69147 -15.58717 -15.27190 -15.09087 -14.97751 -14.84700 -14.12296 -13.83882 -13.68187 -13.60745 -13.31581 -13.10266 -12.92323 -12.84903 -12.82215 -12.78638 -12.75241 -12.63636 -12.23269 -12.00935 -11.79405 -11.60532 -11.37611 -11.30614 -11.12843 -10.70401 -10.28476 -10.19152 -10.02628 -9.73037 -8.87807 -7.85302 -5.20138 -1.05009 -0.64749 0.68975 1.26762 1.43859 1.45923 1.54572 1.96104 2.15197 2.49062 2.92628 2.97851 3.09746 3.17226 3.32403 3.50439 3.68305 3.75925 3.80483 3.86959 3.97882 4.00318 4.10852 4.17401 4.35144 4.39092 4.41708 4.63475 4.65301 4.71004 4.72669 4.78596 4.89416 4.94167 5.01220 5.02742 5.14571 5.15216 5.18792 5.28053 5.36109 5.45271 5.50004 5.55417 5.72808 5.81045 6.18446 6.21666 6.44379 6.64147 7.09638 7.11782 7.80039 8.43902 9.24914 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.001653 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.342757 B =16936.621836 C =17537.200108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.099 4.099 15 C 0.121 3.879 16 N -0.702 5.702 17 C 0.553 3.447 18 O -0.578 6.578 19 C -0.117 4.117 20 C -0.066 4.066 21 C -0.082 4.082 22 C 0.076 3.924 23 N -0.449 5.449 24 C 0.097 3.903 25 C 0.084 3.916 26 N -0.455 5.455 27 C 0.047 3.953 28 C -0.032 4.032 29 C 0.132 3.868 30 H 0.246 0.754 31 H 0.006 0.994 32 H 0.004 0.996 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.419 0.581 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.223 0.777 43 H 0.218 0.782 44 H 0.135 0.865 45 H 0.026 0.974 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -35.375 3.205 35.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.137 4.137 15 C -0.003 4.003 16 N -0.354 5.354 17 C 0.341 3.659 18 O -0.459 6.459 19 C -0.122 4.122 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.047 4.047 23 N -0.163 5.163 24 C -0.079 4.079 25 C -0.093 4.093 26 N -0.169 5.169 27 C -0.075 4.075 28 C -0.053 4.053 29 C 0.007 3.993 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.258 0.742 40 H 0.194 0.806 41 H 0.189 0.811 42 H 0.239 0.761 43 H 0.234 0.766 44 H 0.152 0.848 45 H 0.044 0.956 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.095 -34.531 2.685 35.008 hybrid contribution 0.401 1.451 -0.049 1.506 sum 5.495 -33.080 2.636 33.637 Atomic orbital electron populations 1.70190 1.06206 1.25182 1.58415 1.25646 0.96673 1.00991 1.02774 0.85096 0.77649 0.79224 0.77482 1.21329 1.21820 1.19525 1.19467 0.90928 0.84102 1.42837 0.90406 1.44851 1.02717 1.01244 1.86961 1.20948 0.83531 0.92683 0.97354 1.22758 0.97359 0.94377 1.01472 1.22153 0.94852 0.93839 0.99717 0.91015 1.21608 0.96937 0.93655 1.01545 1.21376 0.98773 0.80711 0.99391 1.45750 1.26558 1.13857 1.49282 1.18440 0.81239 0.85921 0.80311 1.90801 1.45184 1.72631 1.37272 1.19918 0.97566 0.93582 1.01103 1.21313 0.98182 0.95254 0.93888 1.21005 0.96228 0.93020 0.99843 1.19972 0.96377 0.92559 0.95811 1.68835 1.21350 1.04771 1.21392 1.24986 0.88506 1.02454 0.91986 1.24919 1.00302 0.90994 0.93099 1.68698 1.18972 1.07808 1.21420 1.19495 0.94023 0.95490 0.98521 1.21194 0.96380 0.91114 0.96605 1.21859 0.95409 0.84744 0.97255 0.94442 0.97585 0.97806 0.89953 0.90333 0.88089 0.89727 0.92833 0.91948 0.74209 0.80645 0.81126 0.76094 0.76578 0.84759 0.95618 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 10.31 21.65 0.22 -58.35 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 3 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -14.21 10.28 84.03 0.86 -13.35 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -33.28 3.40 -691.87 -2.35 -35.63 16 10 C 0.18 8.94 5.37 86.73 0.47 9.41 16 11 C -0.12 -4.09 6.42 31.78 0.20 -3.88 16 12 C -0.09 -2.62 3.04 -9.40 -0.03 -2.65 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 14 C -0.10 -1.95 4.84 30.59 0.15 -1.81 16 15 C 0.12 2.69 5.55 86.38 0.48 3.17 16 16 N -0.70 -12.33 5.50 -465.96 -2.57 -14.89 16 17 C 0.55 13.03 7.77 86.79 0.67 13.70 16 18 O -0.58 -19.26 16.30 -3.86 -0.06 -19.32 16 19 C -0.12 -2.20 5.87 -20.11 -0.12 -2.32 16 20 C -0.07 -0.76 9.44 22.27 0.21 -0.55 16 21 C -0.08 -1.00 9.95 22.29 0.22 -0.78 16 22 C 0.08 1.29 6.59 40.32 0.27 1.56 16 23 N -0.45 -6.50 10.46 -187.89 -1.96 -8.46 16 24 C 0.10 0.75 11.21 85.13 0.95 1.70 16 25 C 0.08 0.77 11.21 85.14 0.95 1.73 16 26 N -0.45 -8.47 10.46 -188.12 -1.97 -10.43 16 27 C 0.05 0.95 6.58 40.25 0.27 1.22 16 28 C -0.03 -0.71 9.56 22.85 0.22 -0.50 16 29 C 0.13 5.35 6.04 86.85 0.52 5.87 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.01 0.33 7.38 -2.39 -0.02 0.31 16 32 H 0.00 0.21 7.50 -2.39 -0.02 0.19 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.08 1.50 8.04 -2.38 -0.02 1.48 16 37 H 0.05 1.46 7.60 -2.38 -0.02 1.44 16 38 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.42 3.87 6.46 -92.71 -0.60 3.27 16 40 H 0.18 0.59 6.35 -2.91 -0.02 0.58 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.22 -0.48 8.06 -2.91 -0.02 -0.51 16 43 H 0.22 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.13 3.39 7.61 -2.91 -0.02 3.37 16 45 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 46 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -85.61 380.42 0.52 -85.09 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.41 Total: 3.83 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.77 Total: 9.00 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -8.62 Total: -127.77 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -85.61 0.52 -85.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494078728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.433 kcal (2) G-P(sol) polarization free energy of solvation -85.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds