Wall clock time and date at job start Tue Mar 31 2020 23:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00007 * 2 1 4 4 O 1.21287 * 120.00071 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00273 * 0.02562 * 3 2 1 6 6 S 1.80993 * 109.47352 * 179.97438 * 5 3 2 7 7 C 1.76201 * 100.00038 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00064 * 0.02562 * 7 6 5 9 9 C 1.38805 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00011 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99876 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46950 * 59.99837 * 11 9 7 13 13 H 1.48498 * 109.47086 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47071 * 300.00042 * 11 9 7 15 15 C 1.46503 * 120.00108 * 179.97438 * 2 1 3 16 16 H 1.09000 * 109.52736 * 179.97438 * 15 2 1 17 17 C 1.53043 * 109.49732 * 59.83747 * 15 2 1 18 18 C 1.53037 * 109.53919 * 178.68549 * 17 15 2 19 19 C 1.53191 * 109.31499 * 61.36673 * 18 17 15 20 20 N 1.46925 * 108.77423 * 305.36620 * 19 18 17 21 21 C 1.34779 * 120.63041 * 233.62788 * 20 19 18 22 22 O 1.21283 * 119.99742 * 179.97438 * 21 20 19 23 23 C 1.50696 * 120.00186 * 359.97438 * 21 20 19 24 24 C 1.52997 * 109.47364 * 179.97438 * 23 21 20 25 25 C 1.53005 * 117.49758 * 243.74654 * 24 23 21 26 26 C 1.53001 * 117.49789 * 175.08657 * 24 23 21 27 27 C 1.46926 * 118.73914 * 53.60547 * 20 19 18 28 28 H 1.08995 * 109.46888 * 269.99902 * 1 2 3 29 29 H 1.09004 * 109.46739 * 30.00145 * 1 2 3 30 30 H 1.09000 * 109.47090 * 149.99727 * 1 2 3 31 31 H 1.09004 * 109.46606 * 300.00028 * 5 3 2 32 32 H 1.09002 * 109.46738 * 59.99877 * 5 3 2 33 33 H 0.97008 * 120.00215 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.45405 * 58.66342 * 17 15 2 35 35 H 1.09001 * 109.45854 * 298.70631 * 17 15 2 36 36 H 1.08997 * 109.49928 * 301.41588 * 18 17 15 37 37 H 1.08998 * 109.49765 * 181.31916 * 18 17 15 38 38 H 1.08998 * 109.59071 * 185.58119 * 19 18 17 39 39 H 1.09003 * 109.70105 * 65.21889 * 19 18 17 40 40 H 1.08995 * 109.47063 * 300.00414 * 23 21 20 41 41 H 1.09006 * 109.47000 * 59.99630 * 23 21 20 42 42 H 1.09002 * 115.55199 * 29.41649 * 24 23 21 43 43 H 1.09001 * 117.49556 * 0.02562 * 25 24 23 44 44 H 1.09001 * 117.49585 * 145.01818 * 25 24 23 45 45 H 1.08997 * 117.49832 * 214.97654 * 26 24 23 46 46 H 1.09000 * 117.49829 * 359.97438 * 26 24 23 47 47 H 1.09006 * 109.58406 * 66.18027 * 27 20 19 48 48 H 1.09002 * 109.59019 * 186.60016 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4416 5.2082 0.0010 8 1 0.3763 5.0305 0.0011 9 6 1.9284 6.5081 0.0009 10 7 3.2267 6.7246 0.0013 11 14 0.7409 7.9501 0.0000 12 1 -0.1147 7.8875 1.2122 13 1 1.5070 9.2222 -0.0007 14 1 -0.1136 7.8868 -1.2129 15 6 2.1976 -1.2687 0.0006 16 1 3.2694 -1.0706 0.0000 17 6 1.8252 -2.0741 -1.2464 18 6 2.6145 -3.3851 -1.2635 19 6 2.2495 -4.2124 -0.0269 20 7 2.4682 -3.3921 1.1722 21 6 3.2417 -3.8417 2.1801 22 8 3.4148 -3.1548 3.1646 23 6 3.8916 -5.1979 2.0840 24 6 4.7089 -5.4628 3.3499 25 6 6.2232 -5.6167 3.1939 26 6 5.3562 -6.8413 3.4974 27 6 1.8279 -2.0721 1.2515 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8908 33 1 3.5669 7.6331 0.0008 34 1 2.0646 -1.4944 -2.1378 35 1 0.7575 -2.2932 -1.2318 36 1 3.6824 -3.1671 -1.2531 37 1 2.3663 -3.9475 -2.1637 38 1 2.8802 -5.1003 0.0179 39 1 1.2023 -4.5102 -0.0800 40 1 3.1222 -5.9630 1.9811 41 1 4.5492 -5.2249 1.2150 42 1 4.3429 -4.9792 4.2556 43 1 6.6371 -5.5289 2.1893 44 1 6.8533 -5.2347 3.9971 45 1 5.4164 -7.2644 4.5001 46 1 5.1994 -7.5596 2.6927 47 1 0.7457 -2.1933 1.3014 48 1 2.1802 -1.5477 2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495330480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:01 Heat of formation + Delta-G solvation = -45.811266 kcal Electronic energy + Delta-G solvation = -27316.250003 eV Core-core repulsion = 23498.220995 eV Total energy + Delta-G solvation = -3818.029008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.73941 -39.51769 -37.88603 -37.02910 -35.25299 -32.79170 -32.41918 -31.44186 -29.83311 -28.37839 -26.81001 -25.61582 -25.47325 -23.33004 -22.69484 -21.80803 -20.62658 -19.25837 -19.11600 -17.66291 -17.52720 -16.76316 -16.44916 -16.10636 -15.61444 -15.36962 -15.12523 -14.79618 -14.64215 -14.41430 -14.15776 -14.02907 -13.60395 -13.53289 -13.13656 -13.05222 -12.94265 -12.64677 -12.54851 -12.33541 -11.99851 -11.85069 -11.83629 -11.64975 -11.31396 -11.18199 -11.03956 -11.03222 -10.89148 -10.75521 -10.68180 -10.36319 -9.98167 -9.80715 -9.37319 -9.08525 -9.04791 -8.47082 -8.21889 -6.49170 -6.20313 -3.91106 2.37898 2.53538 2.99249 3.05248 3.24119 3.26714 3.29949 3.47564 3.60728 4.13090 4.21233 4.31810 4.44349 4.48364 4.52918 4.58420 4.68756 4.78987 4.93825 4.98931 5.00161 5.06647 5.10292 5.12548 5.14550 5.22785 5.26174 5.31492 5.36865 5.42950 5.47762 5.56023 5.59031 5.64572 5.69244 5.73549 5.79424 5.88104 5.95617 5.98603 6.04755 6.12493 6.13801 6.64421 7.10091 7.49645 7.60157 7.94970 8.35897 8.53816 9.24586 10.87028 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.002159 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.763076 B =12962.870220 C =13724.462634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.619 5.619 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.149 4.149 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.129 3.871 16 H 0.105 0.895 17 C -0.129 4.129 18 C -0.133 4.133 19 C 0.105 3.895 20 N -0.613 5.613 21 C 0.517 3.483 22 O -0.531 6.531 23 C -0.107 4.107 24 C -0.143 4.143 25 C -0.177 4.177 26 C -0.180 4.180 27 C 0.105 3.895 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -29.691 -0.790 30.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C 0.323 3.677 4 O -0.387 6.387 5 C -0.299 4.299 6 S 0.165 5.835 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.024 3.976 16 H 0.123 0.877 17 C -0.168 4.168 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.348 5.348 21 C 0.305 3.695 22 O -0.407 6.407 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.214 4.214 26 C -0.217 4.217 27 C -0.018 4.018 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.415 -29.164 -0.245 29.265 hybrid contribution -2.343 0.943 -0.153 2.530 sum -4.758 -28.221 -0.398 28.622 Atomic orbital electron populations 1.21785 0.79773 1.03227 1.01871 1.47817 1.06750 1.05086 1.75844 1.20398 0.87963 0.84538 0.74835 1.90700 1.13786 1.86631 1.47592 1.23550 1.04550 0.97081 1.04760 1.85426 1.08016 0.93314 1.96705 1.22815 0.94260 0.92209 1.59093 0.90988 1.24994 0.95677 0.98374 0.94550 1.70008 1.11750 1.21761 1.46725 0.86225 0.80184 0.80306 0.78782 1.19926 1.20813 1.19957 1.21271 0.99282 0.83146 0.93879 0.87666 1.21898 1.00385 0.95950 0.98541 1.21904 1.01402 0.96221 0.97641 1.21811 1.01853 0.93800 0.84289 1.48065 1.49892 1.18151 1.18644 1.20624 0.78029 0.88525 0.82334 1.90725 1.60606 1.58329 1.31038 1.21243 0.99987 0.94676 0.98805 1.22078 0.94590 1.00043 0.99433 1.23056 0.93321 1.01969 1.03080 1.23006 1.04811 0.90983 1.02937 1.21907 0.97261 0.82869 0.99810 0.92654 0.90431 0.91296 0.89200 0.89178 0.92126 0.90780 0.91348 0.90954 0.90074 0.89520 0.91023 0.88523 0.88704 0.86373 0.88774 0.88626 0.88674 0.88809 0.91297 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.21 59.85 0.55 1.32 16 2 N -0.62 -8.68 2.77 -173.79 -0.48 -9.17 16 3 C 0.53 10.31 7.69 -10.99 -0.08 10.23 16 4 O -0.51 -12.02 15.19 5.55 0.08 -11.93 16 5 C -0.15 -3.05 4.71 36.00 0.17 -2.88 16 6 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 11 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.13 1.60 2.67 -67.81 -0.18 1.41 16 16 H 0.11 1.66 6.90 -51.93 -0.36 1.30 16 17 C -0.13 -1.14 5.12 -26.69 -0.14 -1.27 16 18 C -0.13 -0.86 6.08 -26.61 -0.16 -1.02 16 19 C 0.11 0.61 6.34 -3.71 -0.02 0.58 16 20 N -0.61 -5.90 2.97 -172.77 -0.51 -6.42 16 21 C 0.52 5.82 7.70 -10.99 -0.08 5.74 16 22 O -0.53 -8.45 14.98 5.56 0.08 -8.36 16 23 C -0.11 -0.79 4.33 -27.89 -0.12 -0.91 16 24 C -0.14 -1.22 5.41 -90.62 -0.49 -1.71 16 25 C -0.18 -1.38 10.18 -26.69 -0.27 -1.65 16 26 C -0.18 -1.16 10.25 -26.69 -0.27 -1.43 16 27 C 0.11 1.20 5.79 -3.71 -0.02 1.18 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 30 H 0.07 0.51 6.45 -51.93 -0.33 0.17 16 31 H 0.09 1.68 7.40 -51.91 -0.38 1.30 16 32 H 0.09 1.72 8.11 -51.91 -0.42 1.30 16 33 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.49 6.71 -51.93 -0.35 0.14 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.48 7.94 -51.93 -0.41 0.07 16 41 H 0.09 0.55 7.42 -51.93 -0.39 0.16 16 42 H 0.12 1.27 7.31 -51.93 -0.38 0.89 16 43 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 48 H 0.10 1.44 7.01 -51.93 -0.36 1.08 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -37.06 395.47 -10.06 -47.12 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.76 Total: -0.70 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.93 Total: -3.45 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.26 Total: -41.24 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.06 -10.06 -47.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495330480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.310 kcal (2) G-P(sol) polarization free energy of solvation -37.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds