Wall clock time and date at job start Tue Mar 31 2020 23:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00466 * 2 1 4 4 O 1.21274 * 120.00344 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99423 * 0.02562 * 3 2 1 6 6 S 1.81001 * 109.46896 * 180.02562 * 5 3 2 7 7 C 1.76201 * 99.99894 * 180.02562 * 6 5 3 8 8 H 1.07991 * 120.00323 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99766 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00034 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46807 * 179.97438 * 11 9 7 13 13 H 1.48497 * 109.46906 * 300.00462 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.46503 * 119.99900 * 180.02562 * 2 1 3 16 16 H 1.09006 * 109.49718 * 180.02562 * 15 2 1 17 17 C 1.53039 * 109.49519 * 300.06329 * 15 2 1 18 18 C 1.53044 * 109.53754 * 181.32112 * 17 15 2 19 19 C 1.53195 * 109.30653 * 298.63036 * 18 17 15 20 20 N 1.46929 * 108.77608 * 54.63802 * 19 18 17 21 21 C 1.34771 * 120.62848 * 126.42970 * 20 19 18 22 22 O 1.21285 * 120.00211 * 179.97438 * 21 20 19 23 23 C 1.50706 * 120.00367 * 0.02562 * 21 20 19 24 24 C 1.52997 * 109.47214 * 179.97438 * 23 21 20 25 25 C 1.52998 * 117.50028 * 243.62157 * 24 23 21 26 26 C 1.52997 * 60.00024 * 252.50910 * 25 24 23 27 27 C 1.46930 * 118.76174 * 306.40979 * 20 19 18 28 28 H 1.08998 * 109.47302 * 89.99620 * 1 2 3 29 29 H 1.08999 * 109.47029 * 209.99915 * 1 2 3 30 30 H 1.09003 * 109.46544 * 329.99739 * 1 2 3 31 31 H 1.09001 * 109.47454 * 60.00304 * 5 3 2 32 32 H 1.09003 * 109.47322 * 299.99933 * 5 3 2 33 33 H 0.97001 * 119.99662 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46416 * 301.33700 * 17 15 2 35 35 H 1.08999 * 109.46322 * 61.29818 * 17 15 2 36 36 H 1.08993 * 109.50338 * 58.58023 * 18 17 15 37 37 H 1.09001 * 109.49377 * 178.65229 * 18 17 15 38 38 H 1.09003 * 109.58296 * 174.42618 * 19 18 17 39 39 H 1.08996 * 109.59180 * 294.84492 * 19 18 17 40 40 H 1.09000 * 109.46726 * 300.00013 * 23 21 20 41 41 H 1.09001 * 109.46923 * 60.00002 * 23 21 20 42 42 H 1.09005 * 115.55225 * 29.32963 * 24 23 21 43 43 H 1.08999 * 117.49654 * 0.02562 * 25 24 23 44 44 H 1.09000 * 117.49942 * 145.02313 * 25 24 23 45 45 H 1.09000 * 117.50265 * 252.50790 * 26 25 24 46 46 H 1.09001 * 117.50130 * 107.48723 * 26 25 24 47 47 H 1.09001 * 109.55999 * 293.78358 * 27 20 19 48 48 H 1.09002 * 109.61248 * 173.35712 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5617 3.8480 -0.0003 7 6 1.4416 5.2082 0.0013 8 1 0.3764 5.0305 0.0020 9 6 1.9284 6.5081 0.0017 10 7 3.2268 6.7246 0.0003 11 14 0.7410 7.9501 0.0027 12 1 1.5072 9.2221 0.0036 13 1 -0.1145 7.8876 -1.2095 14 1 -0.1136 7.8867 1.2155 15 6 2.1975 -1.2688 -0.0006 16 1 3.2693 -1.0701 0.0000 17 6 1.8270 -2.0730 1.2477 18 6 2.6164 -3.3840 1.2648 19 6 2.2495 -4.2123 0.0294 20 7 2.4664 -3.3930 -1.1708 21 6 3.2374 -3.8441 -2.1799 22 8 3.4084 -3.1585 -3.1657 23 6 3.8863 -5.2009 -2.0841 24 6 4.6997 -5.4679 -3.3521 25 6 4.2608 -6.6336 -4.2407 26 6 5.5336 -6.7498 -3.3997 27 6 1.8265 -2.0728 -1.2506 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 0.7592 2.5299 0.8908 32 1 0.7584 2.5302 -0.8892 33 1 3.5670 7.6330 0.0002 34 1 2.0677 -1.4926 2.1384 35 1 0.7593 -2.2921 1.2348 36 1 3.6842 -3.1660 1.2526 37 1 2.3698 -3.9453 2.1661 38 1 2.8800 -5.1004 -0.0154 39 1 1.2019 -4.5081 0.0856 40 1 4.5457 -5.2278 -1.2166 41 1 3.1163 -5.9653 -1.9791 42 1 5.1062 -4.5846 -3.8447 43 1 3.3922 -7.2099 -3.9220 44 1 4.3783 -6.5172 -5.3180 45 1 6.4885 -6.7099 -3.9238 46 1 5.5028 -7.4029 -2.5276 47 1 0.7444 -2.1940 -1.2993 48 1 2.1781 -1.5490 -2.1396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495330492.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:04 Heat of formation + Delta-G solvation = -70.340451 kcal Electronic energy + Delta-G solvation = -27285.277118 eV Core-core repulsion = 23466.184445 eV Total energy + Delta-G solvation = -3819.092673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66838 -40.73118 -38.78499 -37.80876 -36.41834 -34.60210 -33.65777 -32.34435 -30.82762 -29.54158 -27.82009 -27.65408 -26.34482 -24.18885 -23.22498 -22.57337 -21.46027 -20.49817 -19.95729 -19.54528 -18.40181 -18.07652 -17.32700 -17.13336 -16.89392 -16.79264 -16.48007 -15.90883 -15.82939 -15.44166 -15.13732 -14.77762 -14.56646 -14.54915 -14.49015 -14.27500 -13.95248 -13.71535 -13.54645 -13.34173 -13.22208 -13.16357 -12.87626 -12.65718 -12.54794 -12.39540 -12.32342 -11.99164 -11.91394 -11.76429 -11.70794 -11.30589 -11.14308 -11.04623 -10.93166 -10.73205 -10.29736 -10.02492 -9.50914 -8.70693 -8.35912 -6.15345 1.20588 1.40802 1.43113 1.48561 1.53627 1.59814 1.80894 2.21727 2.26374 2.91105 2.97957 3.23302 3.46947 3.55935 3.73522 3.79416 3.83764 3.94132 4.00212 4.04858 4.15216 4.17585 4.18369 4.28246 4.40979 4.42600 4.53471 4.56134 4.62118 4.65991 4.70425 4.75896 4.80020 4.80821 4.84466 4.94355 5.03468 5.07142 5.17417 5.27233 5.28095 5.33340 5.38912 5.39552 5.60733 6.17440 6.19828 6.36618 7.04598 7.08015 7.13997 8.73222 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.002119 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.539482 B =13211.874086 C =13893.257142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.605 5.605 3 C 0.529 3.471 4 O -0.569 6.569 5 C -0.120 4.120 6 S -0.159 6.159 7 C -0.545 4.545 8 H 0.085 0.915 9 C 0.011 3.989 10 N -0.912 5.912 11 Si 1.001 2.999 12 H -0.279 1.279 13 H -0.262 1.262 14 H -0.259 1.259 15 C 0.129 3.871 16 H 0.059 0.941 17 C -0.122 4.122 18 C -0.129 4.129 19 C 0.101 3.899 20 N -0.610 5.610 21 C 0.505 3.495 22 O -0.593 6.593 23 C -0.095 4.095 24 C -0.169 4.169 25 C -0.179 4.179 26 C -0.163 4.163 27 C 0.112 3.888 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -32.972 2.308 34.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.317 3.683 4 O -0.448 6.448 5 C -0.271 4.271 6 S 0.069 5.931 7 C -0.693 4.693 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.822 3.178 12 H -0.204 1.204 13 H -0.187 1.187 14 H -0.184 1.184 15 C 0.024 3.976 16 H 0.077 0.923 17 C -0.160 4.160 18 C -0.168 4.168 19 C -0.020 4.020 20 N -0.344 5.344 21 C 0.295 3.705 22 O -0.474 6.474 23 C -0.134 4.134 24 C -0.188 4.188 25 C -0.216 4.216 26 C -0.199 4.199 27 C -0.012 4.012 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.137 0.863 47 H 0.116 0.884 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.327 -32.520 1.799 33.179 hybrid contribution -1.298 1.762 -0.406 2.226 sum -7.625 -30.759 1.393 31.720 Atomic orbital electron populations 1.22165 0.76650 1.05380 1.03397 1.47826 1.08608 1.04061 1.73363 1.20263 0.87281 0.85708 0.75020 1.90677 1.16028 1.87441 1.50654 1.23356 1.02604 0.94631 1.06523 1.85661 1.12906 0.97527 1.97051 1.23155 0.94598 0.92490 1.59034 0.89725 1.26188 0.97670 1.01799 0.93688 1.70193 1.14224 1.22536 1.47913 0.84969 0.77524 0.75698 0.79584 1.20429 1.18660 1.18376 1.21375 0.96702 0.82814 0.96674 0.92294 1.21887 1.02580 0.96260 0.95271 1.21935 0.99907 0.95310 0.99629 1.22202 1.04350 0.93781 0.81656 1.48234 1.49068 1.17508 1.19546 1.21489 0.77686 0.89606 0.81674 1.90703 1.62715 1.60417 1.33538 1.21282 1.00381 0.92709 0.99010 1.22015 1.04402 0.93388 0.98977 1.23128 0.99627 1.00997 0.97840 1.23087 0.95258 0.98453 1.03135 1.21680 0.98700 0.83677 0.97140 0.91392 0.87336 0.90193 0.86869 0.87573 0.91997 0.92177 0.88285 0.92861 0.86643 0.86551 0.88116 0.86191 0.85368 0.90268 0.86993 0.89637 0.88846 0.86314 0.88426 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.21 127.77 1.18 2.30 16 2 N -0.60 -16.73 2.76 -822.15 -2.27 -19.00 16 3 C 0.53 21.18 7.69 87.66 0.67 21.85 16 4 O -0.57 -28.69 15.19 -3.01 -0.05 -28.73 16 5 C -0.12 -4.98 4.71 71.24 0.34 -4.65 16 6 S -0.16 -9.14 20.57 -56.49 -1.16 -10.31 16 7 C -0.55 -31.69 9.50 67.96 0.65 -31.05 16 8 H 0.08 4.52 7.80 -2.92 -0.02 4.50 16 9 C 0.01 0.64 5.49 84.86 0.47 1.11 16 10 N -0.91 -57.25 13.22 21.65 0.29 -56.96 16 11 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 15 C 0.13 3.18 2.67 45.07 0.12 3.30 16 16 H 0.06 2.02 6.90 -2.38 -0.02 2.01 16 17 C -0.12 -1.82 5.12 30.62 0.16 -1.66 16 18 C -0.13 -1.23 6.08 30.67 0.19 -1.04 16 19 C 0.10 0.72 6.34 86.36 0.55 1.27 16 20 N -0.61 -10.87 2.97 -818.88 -2.43 -13.31 16 21 C 0.51 11.38 7.70 87.66 0.67 12.06 16 22 O -0.59 -20.44 14.97 -3.05 -0.05 -20.49 16 23 C -0.09 -1.19 4.33 29.85 0.13 -1.06 16 24 C -0.17 -2.87 5.41 -10.80 -0.06 -2.93 16 25 C -0.18 -2.34 10.18 30.59 0.31 -2.03 16 26 C -0.16 -1.82 10.25 30.59 0.31 -1.50 16 27 C 0.11 2.53 5.79 86.36 0.50 3.03 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.05 6.45 -2.39 -0.02 1.04 16 30 H 0.08 1.39 6.44 -2.39 -0.02 1.37 16 31 H 0.11 4.14 7.40 -2.39 -0.02 4.12 16 32 H 0.11 4.03 8.11 -2.39 -0.02 4.01 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.10 0.90 6.72 -2.39 -0.02 0.88 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.12 0.22 5.94 -2.39 -0.01 0.20 16 39 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.12 0.98 7.69 -2.39 -0.02 0.96 16 41 H 0.13 0.73 7.68 -2.39 -0.02 0.71 16 42 H 0.08 1.98 7.31 -2.38 -0.02 1.96 16 43 H 0.11 1.02 8.03 -2.39 -0.02 1.00 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.10 1.62 7.51 -2.39 -0.02 1.60 16 48 H 0.05 1.65 7.01 -2.39 -0.02 1.63 16 Total: -1.00 -91.18 395.47 3.48 -87.70 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.95 Total: 15.93 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.18 Total: -0.99 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -4.42 Total: -89.27 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.09 Total: -49.22 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.31 kcal Total: -91.18 3.48 -87.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495330492.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.355 kcal (2) G-P(sol) polarization free energy of solvation -91.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds