Wall clock time and date at job start Tue Mar 31 2020 23:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48502 * 109.47261 * 239.99843 * 3 2 1 5 5 H 1.48502 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46897 * 120.00404 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43379 * 307.53262 * 11 10 9 13 13 C 1.54888 * 110.49144 * 70.22314 * 11 10 9 14 14 C 1.54880 * 102.75044 * 156.61781 * 13 11 10 15 15 C 1.54265 * 104.19918 * 322.05742 * 14 13 11 16 16 C 1.53878 * 106.59441 * 23.61137 * 15 14 13 17 17 H 1.09005 * 110.03122 * 240.71253 * 16 15 14 18 18 N 1.46501 * 110.03231 * 119.28802 * 16 15 14 19 19 C 1.34772 * 120.00458 * 87.82959 * 18 16 15 20 20 O 1.21551 * 119.99807 * 0.02562 * 19 18 16 21 21 C 1.47863 * 120.00090 * 179.97438 * 19 18 16 22 22 C 1.40620 * 119.75865 * 359.97438 * 21 19 18 23 23 C 1.35726 * 120.83996 * 179.97438 * 22 21 19 24 24 C 1.40699 * 120.08217 * 0.02562 * 23 22 21 25 25 N 1.33804 * 120.86287 * 180.02562 * 24 23 22 26 26 C 1.31328 * 119.76593 * 179.97438 * 25 24 23 27 27 C 1.39760 * 120.70927 * 359.97438 * 26 25 24 28 28 N 1.31283 * 120.67581 * 359.97438 * 27 26 25 29 29 C 1.33822 * 119.73373 * 0.04882 * 28 27 26 30 30 C 1.38413 * 119.75620 * 179.72612 * 21 19 18 31 31 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 34 34 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 35 35 H 1.09002 * 110.75287 * 274.93733 * 13 11 10 36 36 H 1.09006 * 110.75349 * 38.30032 * 13 11 10 37 37 H 1.09000 * 110.48596 * 203.38078 * 14 13 11 38 38 H 1.09002 * 110.60022 * 80.79064 * 14 13 11 39 39 H 1.08992 * 110.03806 * 264.32723 * 15 14 13 40 40 H 1.09004 * 110.07797 * 142.91379 * 15 14 13 41 41 H 0.97004 * 119.99671 * 267.82917 * 18 16 15 42 42 H 1.07999 * 119.57854 * 359.97438 * 22 21 19 43 43 H 1.08003 * 119.95769 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.64577 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.66141 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.24910 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3434 -4.7048 0.8085 13 6 0.3390 -4.9125 -1.3668 14 6 -0.1114 -6.3936 -1.4147 15 6 1.0600 -7.1663 -0.7741 16 6 1.8073 -6.1655 0.1247 17 1 2.8375 -6.0562 -0.2143 18 7 1.7823 -6.6245 1.5158 19 6 2.7415 -7.4562 1.9684 20 8 3.6275 -7.8250 1.2226 21 6 2.7165 -7.9189 3.3725 22 6 1.6899 -7.4877 4.2314 23 6 1.6454 -7.8992 5.5240 24 6 2.6339 -8.7678 6.0220 25 7 2.6049 -9.1836 7.2935 26 6 3.5383 -9.9948 7.7356 27 6 4.5637 -10.4303 6.8918 28 7 4.6135 -10.0373 5.6401 29 6 3.6741 -9.2104 5.1662 30 6 3.7008 -8.7775 3.8305 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0002 33 1 2.6849 -3.7145 0.8894 34 1 2.6848 -3.7144 -0.8906 35 1 -0.5227 -4.2455 -1.3927 36 1 1.0252 -4.6907 -2.1842 37 1 -0.2610 -6.7137 -2.4458 38 1 -1.0241 -6.5358 -0.8359 39 1 1.7274 -7.5426 -1.5492 40 1 0.6795 -7.9939 -0.1753 41 1 1.0754 -6.3299 2.1111 42 1 0.9272 -6.8206 3.8576 43 1 0.8502 -7.5595 6.1710 44 1 3.5132 -10.3288 8.7623 45 1 5.3225 -11.0977 7.2730 46 1 4.4850 -9.1098 3.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496917683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:50 Heat of formation + Delta-G solvation = 37.496152 kcal Electronic energy + Delta-G solvation = -28165.286336 eV Core-core repulsion = 24247.718608 eV Total energy + Delta-G solvation = -3917.567727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82964 -40.23853 -38.32979 -37.18439 -35.22239 -34.53675 -33.71000 -31.42248 -31.37404 -30.99685 -28.62874 -27.85533 -25.85341 -24.95505 -24.42689 -22.81837 -22.15485 -21.65375 -20.24424 -20.07016 -18.88061 -18.59795 -17.49637 -17.21326 -16.62134 -16.33974 -15.58050 -15.21900 -15.05597 -14.82399 -14.67149 -14.57049 -14.35170 -14.18320 -13.69919 -13.50959 -13.20129 -12.91901 -12.83730 -12.28813 -12.16863 -12.15919 -12.11543 -12.09441 -11.75186 -11.37180 -10.97101 -10.85566 -10.77810 -10.50363 -10.40564 -10.34491 -10.09768 -10.00380 -9.71009 -9.56632 -9.46080 -9.11305 -8.95780 -8.86836 -6.92339 -5.77069 -3.05321 -0.34804 -0.00816 1.41914 1.98229 2.92817 3.01518 3.44294 3.48605 3.49655 3.55830 3.63154 3.70336 3.80294 4.29817 4.38630 4.45193 4.54583 4.59976 4.67886 4.76772 4.80402 4.93460 5.01304 5.26180 5.42716 5.43298 5.53961 5.57752 5.61497 5.64820 5.68118 5.74980 5.78890 5.80873 5.89321 6.03462 6.12327 6.14220 6.19468 6.26576 6.50480 6.52150 6.54561 6.76400 6.79106 6.88126 7.25104 7.38422 7.69984 8.06095 8.42113 9.53422 10.10773 10.45893 11.45764 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.002370 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.613661 B =11813.061708 C =13188.334048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.145 3.855 17 H 0.096 0.904 18 N -0.710 5.710 19 C 0.557 3.443 20 O -0.531 6.531 21 C -0.111 4.111 22 C -0.072 4.072 23 C -0.085 4.085 24 C 0.092 3.908 25 N -0.427 5.427 26 C 0.084 3.916 27 C 0.073 3.927 28 N -0.416 5.416 29 C 0.069 3.931 30 C -0.014 4.014 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.177 0.823 45 H 0.178 0.822 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -23.599 11.941 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.114 0.886 18 N -0.361 5.361 19 C 0.343 3.657 20 O -0.409 6.409 21 C -0.116 4.116 22 C -0.093 4.093 23 C -0.104 4.104 24 C -0.031 4.031 25 N -0.141 5.141 26 C -0.092 4.092 27 C -0.103 4.103 28 N -0.130 5.130 29 C -0.055 4.055 30 C -0.035 4.035 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.236 0.764 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.194 0.806 45 H 0.195 0.805 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.745 -23.584 11.189 26.247 hybrid contribution -0.124 1.072 0.532 1.203 sum 2.620 -22.512 11.721 25.515 Atomic orbital electron populations 1.69640 1.05070 1.25738 1.57882 1.24721 0.95526 0.97641 1.03080 0.86273 0.78528 0.83551 0.77877 1.21260 1.21692 1.21315 1.19184 0.91007 0.84195 1.42584 0.91324 1.42307 1.05787 0.99842 1.89505 1.20689 0.92914 0.85176 0.97935 1.22440 0.97916 0.93112 0.98666 0.90217 1.22454 1.00538 0.95220 0.96605 1.22386 0.97548 0.95948 1.00387 1.22547 0.97606 0.97869 0.98989 1.21789 1.01466 0.93102 0.79548 0.88591 1.46109 1.28550 1.47967 1.13492 1.18074 0.81990 0.79134 0.86470 1.90795 1.35820 1.56771 1.57474 1.20072 0.96921 0.99918 0.94690 1.21103 0.97151 0.97902 0.93101 1.20697 0.97975 0.96209 0.95563 1.19690 0.95518 0.97490 0.90447 1.68746 1.23817 1.08662 1.12875 1.24175 0.90446 0.92850 1.01743 1.24129 0.98341 0.98012 0.89804 1.68691 1.22379 1.07533 1.14399 1.19448 0.93267 0.97342 0.95427 1.21239 0.97117 0.92506 0.92612 0.93500 0.78274 0.96466 0.96071 0.90651 0.90978 0.91780 0.91825 0.91201 0.91697 0.76394 0.84036 0.83488 0.80575 0.80548 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.07 5.49 -59.91 -0.33 -18.40 16 10 C 0.16 3.17 5.54 -4.04 -0.02 3.15 16 11 C -0.10 -1.53 2.59 -88.96 -0.23 -1.76 16 12 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 13 C -0.11 -1.57 6.19 -24.74 -0.15 -1.73 16 14 C -0.12 -1.43 6.83 -25.08 -0.17 -1.60 16 15 C -0.13 -1.54 6.59 -25.61 -0.17 -1.71 16 16 C 0.15 1.93 2.82 -66.81 -0.19 1.74 16 17 H 0.10 1.47 7.26 -51.93 -0.38 1.09 16 18 N -0.71 -8.33 4.93 -53.66 -0.26 -8.59 16 19 C 0.56 7.29 7.77 -12.32 -0.10 7.20 16 20 O -0.53 -8.71 15.95 5.32 0.08 -8.63 16 21 C -0.11 -1.23 5.87 -105.00 -0.62 -1.84 16 22 C -0.07 -0.64 9.44 -39.58 -0.37 -1.01 16 23 C -0.09 -0.77 9.95 -39.55 -0.39 -1.16 16 24 C 0.09 0.98 6.59 -84.72 -0.56 0.42 16 25 N -0.43 -4.12 10.46 -10.74 -0.11 -4.24 16 26 C 0.08 0.54 11.22 -17.20 -0.19 0.35 16 27 C 0.07 0.49 11.22 -17.22 -0.19 0.30 16 28 N -0.42 -4.32 10.46 -10.81 -0.11 -4.43 16 29 C 0.07 0.77 6.58 -84.81 -0.56 0.21 16 30 C -0.01 -0.17 9.56 -38.69 -0.37 -0.54 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.38 9.85 7.64 -40.82 -0.31 9.54 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.09 7.97 -51.93 -0.41 0.67 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 41 H 0.40 3.76 6.34 -40.82 -0.26 3.50 16 42 H 0.14 0.90 6.35 -52.49 -0.33 0.57 16 43 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 45 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.16 1.84 7.61 -52.48 -0.40 1.45 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -34.86 383.31 -10.04 -44.90 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.25 Total: 8.68 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.53 Total: -5.28 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.09 Total: -62.88 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.86 -10.04 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496917683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.391 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds