Wall clock time and date at job start Tue Mar 31 2020 23:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48502 * 109.47261 * 239.99843 * 3 2 1 5 5 H 1.48502 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46897 * 120.00404 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43379 * 307.53262 * 11 10 9 13 13 C 1.54888 * 110.49144 * 70.22314 * 11 10 9 14 14 C 1.54880 * 102.75044 * 156.61781 * 13 11 10 15 15 C 1.54265 * 104.19918 * 322.05742 * 14 13 11 16 16 C 1.53878 * 106.59441 * 23.61137 * 15 14 13 17 17 H 1.09005 * 110.03122 * 240.71253 * 16 15 14 18 18 N 1.46501 * 110.03231 * 119.28802 * 16 15 14 19 19 C 1.34772 * 120.00458 * 87.82959 * 18 16 15 20 20 O 1.21551 * 119.99807 * 0.02562 * 19 18 16 21 21 C 1.47863 * 120.00090 * 179.97438 * 19 18 16 22 22 C 1.40620 * 119.75865 * 359.97438 * 21 19 18 23 23 C 1.35726 * 120.83996 * 179.97438 * 22 21 19 24 24 C 1.40699 * 120.08217 * 0.02562 * 23 22 21 25 25 N 1.33804 * 120.86287 * 180.02562 * 24 23 22 26 26 C 1.31328 * 119.76593 * 179.97438 * 25 24 23 27 27 C 1.39760 * 120.70927 * 359.97438 * 26 25 24 28 28 N 1.31283 * 120.67581 * 359.97438 * 27 26 25 29 29 C 1.33822 * 119.73373 * 0.04882 * 28 27 26 30 30 C 1.38413 * 119.75620 * 179.72612 * 21 19 18 31 31 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 34 34 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 35 35 H 1.09002 * 110.75287 * 274.93733 * 13 11 10 36 36 H 1.09006 * 110.75349 * 38.30032 * 13 11 10 37 37 H 1.09000 * 110.48596 * 203.38078 * 14 13 11 38 38 H 1.09002 * 110.60022 * 80.79064 * 14 13 11 39 39 H 1.08992 * 110.03806 * 264.32723 * 15 14 13 40 40 H 1.09004 * 110.07797 * 142.91379 * 15 14 13 41 41 H 0.97004 * 119.99671 * 267.82917 * 18 16 15 42 42 H 1.07999 * 119.57854 * 359.97438 * 22 21 19 43 43 H 1.08003 * 119.95769 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.64577 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.66141 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.24910 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3434 -4.7048 0.8085 13 6 0.3390 -4.9125 -1.3668 14 6 -0.1114 -6.3936 -1.4147 15 6 1.0600 -7.1663 -0.7741 16 6 1.8073 -6.1655 0.1247 17 1 2.8375 -6.0562 -0.2143 18 7 1.7823 -6.6245 1.5158 19 6 2.7415 -7.4562 1.9684 20 8 3.6275 -7.8250 1.2226 21 6 2.7165 -7.9189 3.3725 22 6 1.6899 -7.4877 4.2314 23 6 1.6454 -7.8992 5.5240 24 6 2.6339 -8.7678 6.0220 25 7 2.6049 -9.1836 7.2935 26 6 3.5383 -9.9948 7.7356 27 6 4.5637 -10.4303 6.8918 28 7 4.6135 -10.0373 5.6401 29 6 3.6741 -9.2104 5.1662 30 6 3.7008 -8.7775 3.8305 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0002 33 1 2.6849 -3.7145 0.8894 34 1 2.6848 -3.7144 -0.8906 35 1 -0.5227 -4.2455 -1.3927 36 1 1.0252 -4.6907 -2.1842 37 1 -0.2610 -6.7137 -2.4458 38 1 -1.0241 -6.5358 -0.8359 39 1 1.7274 -7.5426 -1.5492 40 1 0.6795 -7.9939 -0.1753 41 1 1.0754 -6.3299 2.1111 42 1 0.9272 -6.8206 3.8576 43 1 0.8502 -7.5595 6.1710 44 1 3.5132 -10.3288 8.7623 45 1 5.3225 -11.0977 7.2730 46 1 4.4850 -9.1098 3.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496917683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:49 Heat of formation + Delta-G solvation = 13.366379 kcal Electronic energy + Delta-G solvation = -28166.332681 eV Core-core repulsion = 24247.718608 eV Total energy + Delta-G solvation = -3918.614073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.50942 -41.26409 -39.41613 -38.03920 -36.34194 -35.87903 -34.85573 -33.30052 -32.10198 -31.72044 -30.21418 -28.86855 -26.74096 -26.15241 -25.59554 -24.01938 -23.42957 -22.58594 -21.42872 -21.09529 -19.79721 -19.44898 -19.01322 -18.22033 -17.71046 -17.24304 -16.63118 -16.40054 -16.12062 -15.87643 -15.69882 -15.64309 -15.23820 -15.14800 -15.07505 -14.87158 -14.68638 -14.44065 -13.62815 -13.48103 -13.18323 -13.03158 -12.88226 -12.85680 -12.83556 -12.76234 -12.72675 -12.47813 -12.20519 -11.95816 -11.86834 -11.63017 -11.59066 -11.41906 -11.17868 -10.92351 -10.26116 -10.19871 -10.03361 -9.74750 -8.99746 -7.95650 -5.23747 -1.05764 -0.66242 0.68309 1.25067 1.46674 1.48943 1.55221 1.95600 2.14498 2.55198 2.91257 2.96020 3.08523 3.16068 3.36989 3.42453 3.52217 3.67633 3.74116 3.84632 3.91376 3.96545 4.09256 4.16041 4.40937 4.41268 4.47959 4.54220 4.58324 4.65041 4.66755 4.69419 4.74278 4.88580 4.98978 5.00052 5.01970 5.09029 5.14053 5.18678 5.25537 5.34374 5.46677 5.46851 5.51329 5.57673 6.17516 6.26852 6.41813 6.63330 7.06760 7.34036 8.08695 8.34537 9.27201 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.002370 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.613661 B =11813.061708 C =13188.334048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.161 3.839 11 C -0.091 4.091 12 H 0.089 0.911 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.152 3.848 17 H 0.073 0.927 18 N -0.700 5.700 19 C 0.558 3.442 20 O -0.572 6.572 21 C -0.118 4.118 22 C -0.070 4.070 23 C -0.083 4.083 24 C 0.076 3.924 25 N -0.451 5.451 26 C 0.097 3.903 27 C 0.085 3.915 28 N -0.452 5.452 29 C 0.048 3.952 30 C -0.028 4.028 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.010 0.990 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.223 0.777 45 H 0.220 0.780 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -24.851 13.912 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.110 4.110 12 H 0.107 0.893 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.047 3.953 17 H 0.091 0.909 18 N -0.352 5.352 19 C 0.346 3.654 20 O -0.452 6.452 21 C -0.123 4.123 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.046 4.046 25 N -0.165 5.165 26 C -0.079 4.079 27 C -0.092 4.092 28 N -0.166 5.166 29 C -0.074 4.074 30 C -0.049 4.049 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.252 0.748 42 H 0.184 0.816 43 H 0.185 0.815 44 H 0.240 0.760 45 H 0.236 0.764 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.331 -24.834 13.146 28.196 hybrid contribution 0.123 1.329 0.079 1.337 sum 2.454 -23.506 13.226 27.083 Atomic orbital electron populations 1.69779 1.06337 1.26177 1.59219 1.25491 0.96421 1.00802 1.03580 0.85272 0.77305 0.79473 0.78067 1.20621 1.21815 1.20622 1.19534 0.91284 0.85589 1.41617 0.91378 1.42442 1.05632 1.00711 1.89309 1.20782 0.93683 0.85123 0.96961 1.22283 0.97022 0.91971 0.99699 0.89310 1.22407 0.99665 0.97317 0.95502 1.22316 0.97758 0.93190 1.01619 1.22484 0.97500 0.97603 0.98691 1.21580 1.00201 0.92772 0.80763 0.90874 1.45984 1.28640 1.47396 1.13146 1.18368 0.81349 0.78660 0.87052 1.90769 1.37387 1.58353 1.58692 1.19927 0.97987 1.00611 0.93788 1.21269 0.96895 0.98033 0.92829 1.20961 0.98018 0.95532 0.95726 1.19915 0.95698 0.98009 0.91020 1.68827 1.25261 1.10075 1.12310 1.25010 0.88816 0.90616 1.03456 1.24947 0.98804 0.96946 0.88498 1.68704 1.22919 1.08519 1.16441 1.19479 0.94253 0.98355 0.95343 1.21188 0.97205 0.93339 0.93124 0.93891 0.79000 0.97206 0.96828 0.91875 0.92244 0.90337 0.90213 0.91281 0.90525 0.74813 0.81600 0.81519 0.76036 0.76350 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.18 13.06 21.65 0.28 -57.90 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -37.07 5.49 -343.45 -1.89 -38.96 16 10 C 0.16 6.48 5.54 86.38 0.48 6.96 16 11 C -0.09 -2.69 2.59 -9.72 -0.03 -2.72 16 12 H 0.09 2.51 7.74 -2.39 -0.02 2.49 16 13 C -0.11 -3.12 6.19 31.88 0.20 -2.92 16 14 C -0.11 -2.32 6.83 31.67 0.22 -2.10 16 15 C -0.12 -2.75 6.59 31.32 0.21 -2.55 16 16 C 0.15 4.01 2.82 45.72 0.13 4.14 16 17 H 0.07 2.31 7.26 -2.38 -0.02 2.29 16 18 N -0.70 -16.13 4.93 -441.95 -2.18 -18.31 16 19 C 0.56 14.95 7.77 86.79 0.67 15.62 16 20 O -0.57 -19.66 15.95 -3.88 -0.06 -19.72 16 21 C -0.12 -2.68 5.87 -20.11 -0.12 -2.79 16 22 C -0.07 -1.18 9.44 22.27 0.21 -0.97 16 23 C -0.08 -1.41 9.95 22.29 0.22 -1.19 16 24 C 0.08 1.55 6.59 40.32 0.27 1.82 16 25 N -0.45 -7.80 10.46 -187.89 -1.96 -9.77 16 26 C 0.10 0.95 11.22 85.14 0.95 1.91 16 27 C 0.08 0.92 11.22 85.14 0.95 1.88 16 28 N -0.45 -9.14 10.46 -188.10 -1.97 -11.11 16 29 C 0.05 1.09 6.58 40.25 0.27 1.35 16 30 C -0.03 -0.69 9.56 22.85 0.22 -0.47 16 31 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.38 19.70 7.64 -92.71 -0.71 18.99 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.01 0.58 8.02 -2.39 -0.02 0.56 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.81 7.97 -2.38 -0.02 1.79 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.56 7.92 -2.38 -0.02 1.54 16 41 H 0.41 7.21 6.34 -92.71 -0.59 6.62 16 42 H 0.17 1.80 6.35 -2.91 -0.02 1.78 16 43 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.22 -0.05 8.06 -2.91 -0.02 -0.08 16 45 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 46 H 0.14 3.70 7.61 -2.91 -0.02 3.68 16 Total: -1.00 -77.64 383.31 0.14 -77.50 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.27 Total: 28.69 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.16 Total: 1.24 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -7.71 Total: -136.05 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.72 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -77.64 0.14 -77.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496917683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.865 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds