Wall clock time and date at job start Tue Mar 31 2020 23:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00564 * 2 1 4 4 H 1.48499 * 109.46732 * 270.00406 * 3 2 1 5 5 H 1.48499 * 109.46868 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47354 * 150.00083 * 3 2 1 7 7 C 1.38814 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00012 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00218 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00049 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46963 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43320 * 56.08449 * 11 10 9 13 13 C 1.54268 * 110.48341 * 293.54388 * 11 10 9 14 14 C 1.53875 * 106.59850 * 217.71305 * 13 11 10 15 15 C 1.54261 * 106.59738 * 359.97438 * 14 13 11 16 16 H 1.09002 * 110.48926 * 264.80016 * 15 14 13 17 17 N 1.46501 * 110.48661 * 142.28923 * 15 14 13 18 18 C 1.34783 * 120.00160 * 86.45420 * 17 15 14 19 19 O 1.21540 * 119.99578 * 359.97438 * 18 17 15 20 20 C 1.47886 * 119.99925 * 180.02562 * 18 17 15 21 21 N 1.32137 * 120.04024 * 359.97438 * 20 18 17 22 22 C 1.31971 * 122.77283 * 180.02562 * 21 20 18 23 23 C 1.37781 * 121.73248 * 0.02562 * 22 21 20 24 24 C 1.40394 * 118.72401 * 359.97438 * 23 22 21 25 25 C 1.40643 * 122.28282 * 180.02562 * 24 23 22 26 26 C 1.36636 * 117.95223 * 179.97438 * 25 24 23 27 27 C 1.39394 * 119.92541 * 0.02562 * 26 25 24 28 28 N 1.31200 * 121.85902 * 0.02562 * 27 26 25 29 29 C 1.33266 * 121.21508 * 359.65966 * 28 27 26 30 30 C 1.54890 * 110.48342 * 178.77185 * 11 10 9 31 31 H 0.97003 * 119.99405 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99631 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47615 * 60.00161 * 10 9 7 34 34 H 1.09002 * 109.47304 * 300.00048 * 10 9 7 35 35 H 1.09004 * 110.03178 * 336.99794 * 13 11 10 36 36 H 1.09001 * 110.03287 * 98.37793 * 13 11 10 37 37 H 1.09000 * 110.03415 * 119.28896 * 14 13 11 38 38 H 1.08996 * 110.03228 * 240.71697 * 14 13 11 39 39 H 0.97003 * 120.00460 * 266.45204 * 17 15 14 40 40 H 1.08005 * 119.13687 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.64141 * 180.02562 * 23 22 21 42 42 H 1.08008 * 121.02053 * 359.95953 * 25 24 23 43 43 H 1.08000 * 120.03632 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.07019 * 179.97438 * 27 26 25 45 45 H 1.08997 * 110.75347 * 274.92639 * 30 11 10 46 46 H 1.08992 * 110.75945 * 38.30706 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1376 0.0005 9 7 3.3796 -1.2024 0.0000 10 6 4.1119 -2.4711 0.0000 11 6 5.6162 -2.1916 0.0000 12 1 5.8862 -1.5618 0.8476 13 6 6.0415 -1.5255 -1.3248 14 6 7.4180 -2.1094 -1.6884 15 6 7.7813 -3.1095 -0.5715 16 1 8.4051 -2.6294 0.1824 17 7 8.4644 -4.2781 -1.1319 18 6 9.7997 -4.2553 -1.3136 19 8 10.4371 -3.2651 -1.0128 20 6 10.4891 -5.4348 -1.8798 21 7 9.7969 -6.5115 -2.2075 22 6 10.3564 -7.5932 -2.7159 23 6 11.7138 -7.6701 -2.9396 24 6 12.5147 -6.5635 -2.6156 25 6 13.9072 -6.5604 -2.8132 26 6 14.6007 -5.4352 -2.4671 27 6 13.9251 -4.3378 -1.9359 28 7 12.6260 -4.3466 -1.7528 29 6 11.8902 -5.4100 -2.0751 30 6 6.4141 -3.5188 0.0311 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3623 -0.0004 33 1 3.8482 -3.0429 -0.8897 34 1 3.8489 -3.0425 0.8902 35 1 5.3192 -1.7567 -2.1078 36 1 6.1161 -0.4460 -1.1929 37 1 7.3637 -2.6239 -2.6478 38 1 8.1613 -1.3135 -1.7327 39 1 7.9557 -5.0683 -1.3723 40 1 9.7341 -8.4409 -2.9623 41 1 12.1531 -8.5640 -3.3568 42 1 14.4127 -7.4212 -3.2256 43 1 15.6713 -5.3965 -2.6042 44 1 14.4871 -3.4555 -1.6667 45 1 6.5340 -3.8735 1.0548 46 1 5.9301 -4.2751 -0.5867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507399027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:41 Heat of formation + Delta-G solvation = 45.454540 kcal Electronic energy + Delta-G solvation = -28005.098471 eV Core-core repulsion = 24087.875845 eV Total energy + Delta-G solvation = -3917.222626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77841 -39.81049 -38.51926 -37.89605 -34.92498 -34.21085 -33.40150 -31.99623 -31.35795 -30.87789 -28.96519 -27.95029 -25.87535 -24.64393 -24.50375 -23.63932 -21.82754 -21.16074 -20.56942 -19.50289 -19.06784 -18.08442 -18.00259 -17.48499 -16.70489 -16.23937 -15.72392 -15.53306 -15.19178 -14.86439 -14.68000 -14.46658 -14.30795 -13.89650 -13.67065 -13.58020 -13.26893 -13.15326 -13.03480 -12.74456 -12.68946 -12.09227 -11.96906 -11.62682 -11.30652 -11.25199 -10.89096 -10.77035 -10.51606 -10.44679 -10.37421 -10.29188 -10.18953 -9.95315 -9.87991 -9.56638 -9.53185 -9.09792 -8.89552 -8.82930 -7.16061 -5.71657 -3.06205 -0.57235 0.15945 1.15381 2.25534 2.85179 2.89223 3.42393 3.45742 3.49797 3.63973 3.66204 3.74362 3.92615 4.07494 4.19370 4.27495 4.60428 4.64522 4.65911 4.76236 4.81944 4.87344 5.00373 5.04836 5.08987 5.33813 5.42091 5.52826 5.55844 5.60716 5.62494 5.66491 5.75294 5.81872 5.93669 5.97669 6.03246 6.09445 6.19642 6.30418 6.41068 6.56856 6.58497 6.77591 6.90034 7.09586 7.36380 7.54808 8.05596 8.14086 8.47862 9.27796 10.00423 10.20926 11.46946 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.001929 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.372609 B =14514.158841 C =15242.616822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.165 3.835 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.141 3.859 16 H 0.094 0.906 17 N -0.705 5.705 18 C 0.563 3.437 19 O -0.494 6.494 20 C 0.143 3.857 21 N -0.442 5.442 22 C 0.075 3.925 23 C -0.122 4.122 24 C -0.085 4.085 25 C -0.063 4.063 26 C -0.155 4.155 27 C 0.133 3.867 28 N -0.422 5.422 29 C 0.106 3.894 30 C -0.119 4.119 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.166 0.834 45 H 0.073 0.927 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.249 -18.426 -7.196 38.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.036 3.964 16 H 0.112 0.888 17 N -0.357 5.357 18 C 0.346 3.654 19 O -0.366 6.366 20 C -0.011 4.011 21 N -0.155 5.155 22 C -0.071 4.071 23 C -0.142 4.142 24 C -0.092 4.092 25 C -0.089 4.089 26 C -0.176 4.176 27 C -0.041 4.041 28 N -0.129 5.129 29 C -0.019 4.019 30 C -0.158 4.158 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.244 0.756 40 H 0.185 0.815 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.184 0.816 45 H 0.091 0.909 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 32.007 -17.167 -6.513 36.899 hybrid contribution 1.692 -0.053 -0.738 1.846 sum 33.699 -17.219 -7.251 38.531 Atomic orbital electron populations 1.69707 1.05094 1.25730 1.57879 1.24673 0.95247 0.97200 1.02215 0.86544 0.79253 0.84975 0.77791 1.21086 1.21794 1.20283 1.19079 0.80754 0.94686 1.42628 0.89277 1.42706 1.03957 1.02349 1.91104 1.20655 0.87810 0.89202 0.98500 1.22148 0.96254 0.95454 0.98004 0.90523 1.22148 0.95477 0.99959 0.97788 1.22550 0.97634 0.98590 0.98384 1.21971 0.93198 0.85598 0.95591 0.88810 1.45961 1.06818 1.18819 1.64092 1.17583 0.82465 0.85896 0.79449 1.90871 1.65380 1.31835 1.48473 1.21557 0.89024 0.93470 0.97005 1.67353 1.40300 0.99368 1.08492 1.22611 0.92874 0.95665 0.95952 1.22417 0.94871 0.98154 0.98793 1.18988 0.95282 0.95070 0.99904 1.21440 0.91948 0.98955 0.96602 1.22153 1.02123 0.94240 0.99102 1.23373 0.90334 0.97930 0.92455 1.68330 1.06568 1.24789 1.13252 1.19482 0.94268 0.90432 0.97675 1.22728 0.93530 0.98369 1.01158 0.93144 0.80641 0.95432 0.95629 0.90848 0.91907 0.91652 0.91552 0.75559 0.81461 0.83502 0.83634 0.83789 0.81644 0.90860 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.92 13.97 55.49 0.78 -29.14 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.65 27.74 -169.99 -4.71 17.93 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 9 N -0.76 -18.31 5.24 -59.91 -0.31 -18.62 16 10 C 0.17 3.21 5.57 -4.04 -0.02 3.19 16 11 C -0.10 -1.53 2.93 -88.96 -0.26 -1.79 16 12 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.74 6.05 -25.61 -0.15 -1.89 16 14 C -0.13 -1.78 6.53 -25.62 -0.17 -1.95 16 15 C 0.14 1.78 3.16 -66.26 -0.21 1.57 16 16 H 0.09 1.29 7.66 -51.93 -0.40 0.89 16 17 N -0.70 -8.41 5.10 -53.11 -0.27 -8.68 16 18 C 0.56 7.75 7.80 -12.31 -0.10 7.65 16 19 O -0.49 -8.22 14.92 5.33 0.08 -8.14 16 20 C 0.14 1.72 6.81 -82.55 -0.56 1.15 16 21 N -0.44 -4.39 9.48 -9.55 -0.09 -4.48 16 22 C 0.08 0.51 11.12 -17.66 -0.20 0.32 16 23 C -0.12 -0.69 9.93 -38.94 -0.39 -1.08 16 24 C -0.09 -0.68 5.75 -106.79 -0.61 -1.29 16 25 C -0.06 -0.33 9.94 -39.25 -0.39 -0.72 16 26 C -0.16 -0.76 10.03 -39.73 -0.40 -1.16 16 27 C 0.13 1.02 11.14 -17.39 -0.19 0.83 16 28 N -0.42 -5.06 8.49 -10.75 -0.09 -5.15 16 29 C 0.11 1.21 6.61 -84.62 -0.56 0.65 16 30 C -0.12 -1.47 5.92 -24.72 -0.15 -1.62 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 32 H 0.36 8.57 5.38 -40.82 -0.22 8.35 16 33 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 1.18 7.77 -51.93 -0.40 0.78 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.41 4.22 7.87 -40.82 -0.32 3.90 16 40 H 0.17 0.60 8.06 -52.48 -0.42 0.17 16 41 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 42 H 0.15 0.26 8.06 -52.48 -0.42 -0.16 16 43 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 44 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -37.00 381.05 -9.91 -46.91 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.41 Total: 6.94 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -4.61 Total: -3.31 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.01 Total: -66.07 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.08 Total: -8.14 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.00 -9.91 -46.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507399027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.363 kcal (2) G-P(sol) polarization free energy of solvation -37.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds