Wall clock time and date at job start Tue Mar 31 2020 23:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00564 * 2 1 4 4 H 1.48499 * 109.46732 * 270.00406 * 3 2 1 5 5 H 1.48499 * 109.46868 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47354 * 150.00083 * 3 2 1 7 7 C 1.38814 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00012 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00218 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00049 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46963 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43320 * 56.08449 * 11 10 9 13 13 C 1.54268 * 110.48341 * 293.54388 * 11 10 9 14 14 C 1.53875 * 106.59850 * 217.71305 * 13 11 10 15 15 C 1.54261 * 106.59738 * 359.97438 * 14 13 11 16 16 H 1.09002 * 110.48926 * 264.80016 * 15 14 13 17 17 N 1.46501 * 110.48661 * 142.28923 * 15 14 13 18 18 C 1.34783 * 120.00160 * 86.45420 * 17 15 14 19 19 O 1.21540 * 119.99578 * 359.97438 * 18 17 15 20 20 C 1.47886 * 119.99925 * 180.02562 * 18 17 15 21 21 N 1.32137 * 120.04024 * 359.97438 * 20 18 17 22 22 C 1.31971 * 122.77283 * 180.02562 * 21 20 18 23 23 C 1.37781 * 121.73248 * 0.02562 * 22 21 20 24 24 C 1.40394 * 118.72401 * 359.97438 * 23 22 21 25 25 C 1.40643 * 122.28282 * 180.02562 * 24 23 22 26 26 C 1.36636 * 117.95223 * 179.97438 * 25 24 23 27 27 C 1.39394 * 119.92541 * 0.02562 * 26 25 24 28 28 N 1.31200 * 121.85902 * 0.02562 * 27 26 25 29 29 C 1.33266 * 121.21508 * 359.65966 * 28 27 26 30 30 C 1.54890 * 110.48342 * 178.77185 * 11 10 9 31 31 H 0.97003 * 119.99405 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99631 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47615 * 60.00161 * 10 9 7 34 34 H 1.09002 * 109.47304 * 300.00048 * 10 9 7 35 35 H 1.09004 * 110.03178 * 336.99794 * 13 11 10 36 36 H 1.09001 * 110.03287 * 98.37793 * 13 11 10 37 37 H 1.09000 * 110.03415 * 119.28896 * 14 13 11 38 38 H 1.08996 * 110.03228 * 240.71697 * 14 13 11 39 39 H 0.97003 * 120.00460 * 266.45204 * 17 15 14 40 40 H 1.08005 * 119.13687 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.64141 * 180.02562 * 23 22 21 42 42 H 1.08008 * 121.02053 * 359.95953 * 25 24 23 43 43 H 1.08000 * 120.03632 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.07019 * 179.97438 * 27 26 25 45 45 H 1.08997 * 110.75347 * 274.92639 * 30 11 10 46 46 H 1.08992 * 110.75945 * 38.30706 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1376 0.0005 9 7 3.3796 -1.2024 0.0000 10 6 4.1119 -2.4711 0.0000 11 6 5.6162 -2.1916 0.0000 12 1 5.8862 -1.5618 0.8476 13 6 6.0415 -1.5255 -1.3248 14 6 7.4180 -2.1094 -1.6884 15 6 7.7813 -3.1095 -0.5715 16 1 8.4051 -2.6294 0.1824 17 7 8.4644 -4.2781 -1.1319 18 6 9.7997 -4.2553 -1.3136 19 8 10.4371 -3.2651 -1.0128 20 6 10.4891 -5.4348 -1.8798 21 7 9.7969 -6.5115 -2.2075 22 6 10.3564 -7.5932 -2.7159 23 6 11.7138 -7.6701 -2.9396 24 6 12.5147 -6.5635 -2.6156 25 6 13.9072 -6.5604 -2.8132 26 6 14.6007 -5.4352 -2.4671 27 6 13.9251 -4.3378 -1.9359 28 7 12.6260 -4.3466 -1.7528 29 6 11.8902 -5.4100 -2.0751 30 6 6.4141 -3.5188 0.0311 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3623 -0.0004 33 1 3.8482 -3.0429 -0.8897 34 1 3.8489 -3.0425 0.8902 35 1 5.3192 -1.7567 -2.1078 36 1 6.1161 -0.4460 -1.1929 37 1 7.3637 -2.6239 -2.6478 38 1 8.1613 -1.3135 -1.7327 39 1 7.9557 -5.0683 -1.3723 40 1 9.7341 -8.4409 -2.9623 41 1 12.1531 -8.5640 -3.3568 42 1 14.4127 -7.4212 -3.2256 43 1 15.6713 -5.3965 -2.6042 44 1 14.4871 -3.4555 -1.6667 45 1 6.5340 -3.8735 1.0548 46 1 5.9301 -4.2751 -0.5867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507399027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:39 Heat of formation + Delta-G solvation = 18.931870 kcal Electronic energy + Delta-G solvation = -28006.248580 eV Core-core repulsion = 24087.875845 eV Total energy + Delta-G solvation = -3918.372735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.35593 -40.78232 -39.29429 -38.88271 -36.59022 -34.87751 -34.67239 -33.28144 -32.49232 -31.59393 -30.36401 -29.13178 -26.68499 -25.94954 -25.11462 -24.41059 -23.69417 -21.99378 -21.70107 -20.68275 -19.87036 -19.48083 -18.75764 -18.54782 -17.38832 -17.26430 -16.75658 -16.52707 -16.33792 -15.88692 -15.68422 -15.36693 -15.27234 -15.14059 -14.85310 -14.60702 -14.39113 -14.18849 -14.02223 -13.80184 -13.73028 -13.43788 -13.14166 -12.97382 -12.84984 -12.52571 -12.20629 -11.97887 -11.84529 -11.81909 -11.72754 -11.58503 -11.35646 -11.34287 -10.99462 -10.95813 -10.38593 -10.21812 -10.08571 -9.47960 -9.27378 -8.02411 -5.34895 -1.12922 -0.34873 0.62803 1.37827 1.40549 1.47930 1.62675 1.98671 2.15797 2.48482 3.02102 3.04363 3.19608 3.29069 3.40273 3.50797 3.57372 3.65465 3.72292 3.78987 3.93076 4.00996 4.21848 4.26331 4.35941 4.46088 4.46636 4.49285 4.55548 4.59095 4.62271 4.64608 4.74280 4.89682 4.94469 5.02491 5.10324 5.12209 5.14199 5.19847 5.32538 5.33198 5.51032 5.56720 5.60608 5.76747 6.22125 6.40879 6.64238 6.91964 7.08999 7.20332 7.86319 8.05342 9.19202 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.001929 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.372609 B =14514.158841 C =15242.616822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.253 1.253 7 C -0.233 4.233 8 H 0.057 0.943 9 N -0.758 5.758 10 C 0.163 3.837 11 C -0.092 4.092 12 H 0.078 0.922 13 C -0.113 4.113 14 C -0.124 4.124 15 C 0.147 3.853 16 H 0.083 0.917 17 N -0.697 5.697 18 C 0.560 3.440 19 O -0.536 6.536 20 C 0.096 3.904 21 N -0.448 5.448 22 C 0.055 3.945 23 C -0.090 4.090 24 C -0.106 4.106 25 C -0.051 4.051 26 C -0.154 4.154 27 C 0.128 3.872 28 N -0.485 5.485 29 C 0.082 3.918 30 C -0.106 4.106 31 H 0.257 0.743 32 H 0.365 0.635 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.416 0.584 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.190 0.810 43 H 0.184 0.816 44 H 0.181 0.819 45 H 0.087 0.913 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.943 -20.669 -8.296 43.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.178 1.178 7 C -0.364 4.364 8 H 0.075 0.925 9 N -0.404 5.404 10 C 0.037 3.963 11 C -0.111 4.111 12 H 0.096 0.904 13 C -0.151 4.151 14 C -0.162 4.162 15 C 0.042 3.958 16 H 0.101 0.899 17 N -0.349 5.349 18 C 0.345 3.655 19 O -0.410 6.410 20 C -0.055 4.055 21 N -0.161 5.161 22 C -0.092 4.092 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.077 4.077 26 C -0.175 4.175 27 C -0.045 4.045 28 N -0.193 5.193 29 C -0.042 4.042 30 C -0.145 4.145 31 H 0.066 0.934 32 H 0.198 0.802 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.254 0.746 40 H 0.218 0.782 41 H 0.212 0.788 42 H 0.207 0.793 43 H 0.201 0.799 44 H 0.198 0.802 45 H 0.105 0.895 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 35.733 -19.446 -7.611 41.387 hybrid contribution 0.645 0.437 -0.464 0.907 sum 36.378 -19.009 -8.074 41.832 Atomic orbital electron populations 1.69885 1.07060 1.26613 1.59900 1.25501 0.96145 1.01209 1.02817 0.85429 0.78666 0.79724 0.78142 1.20412 1.22157 1.17753 1.19075 0.82827 0.93492 1.41007 0.92459 1.42729 1.02419 1.04329 1.90889 1.20824 0.89959 0.87232 0.98286 1.22035 0.93622 0.97254 0.98233 0.90404 1.22094 0.95948 0.99814 0.97234 1.22445 0.96461 0.98559 0.98781 1.21792 0.93158 0.85781 0.95054 0.89933 1.45853 1.06571 1.18741 1.63713 1.17987 0.82568 0.86254 0.78683 1.90821 1.66216 1.33563 1.50449 1.21220 0.89774 0.93841 1.00712 1.67263 1.40902 0.99648 1.08270 1.23259 0.94280 0.95594 0.96111 1.22967 0.94159 0.98489 0.95380 1.19372 0.97037 0.94665 1.00266 1.21989 0.90621 1.00204 0.94851 1.22521 1.03904 0.93091 0.97941 1.23885 0.89533 0.99640 0.91479 1.68254 1.08562 1.26405 1.16125 1.19683 0.94195 0.91753 0.98546 1.22639 0.92572 0.96970 1.02291 0.93374 0.80151 0.95425 0.95604 0.91939 0.92272 0.91412 0.92196 0.74624 0.78212 0.78830 0.79267 0.79874 0.80193 0.89481 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.42 13.97 21.65 0.30 -64.12 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.95 46.91 27.74 68.60 1.90 48.81 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.25 -11.32 6.52 99.48 0.65 -10.68 16 7 C -0.23 -13.68 10.47 84.03 0.88 -12.80 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.76 -36.43 5.24 -343.44 -1.80 -38.23 16 10 C 0.16 6.24 5.57 86.38 0.48 6.72 16 11 C -0.09 -2.75 2.93 -9.72 -0.03 -2.78 16 12 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.11 -3.34 6.05 31.32 0.19 -3.15 16 14 C -0.12 -3.32 6.53 31.32 0.20 -3.12 16 15 C 0.15 3.72 3.16 46.08 0.15 3.86 16 16 H 0.08 2.32 7.66 -2.39 -0.02 2.30 16 17 N -0.70 -16.99 5.10 -440.23 -2.25 -19.24 16 18 C 0.56 16.31 7.80 86.80 0.68 16.98 16 19 O -0.54 -19.13 14.92 -3.84 -0.06 -19.19 16 20 C 0.10 2.38 6.81 42.45 0.29 2.67 16 21 N -0.45 -8.68 9.48 -184.13 -1.75 -10.43 16 22 C 0.05 0.61 11.12 84.56 0.94 1.55 16 23 C -0.09 -0.69 9.93 22.69 0.23 -0.46 16 24 C -0.11 -1.43 5.75 -21.27 -0.12 -1.56 16 25 C -0.05 -0.32 9.94 22.48 0.22 -0.10 16 26 C -0.15 -1.05 10.03 22.17 0.22 -0.82 16 27 C 0.13 1.90 11.14 85.07 0.95 2.85 16 28 N -0.48 -12.15 8.49 -187.91 -1.60 -13.74 16 29 C 0.08 1.91 6.61 40.62 0.27 2.17 16 30 C -0.11 -2.51 5.92 31.90 0.19 -2.32 16 31 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 32 H 0.37 16.86 5.38 -92.71 -0.50 16.36 16 33 H 0.03 1.07 8.05 -2.39 -0.02 1.05 16 34 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.99 7.77 -2.38 -0.02 1.97 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.42 8.62 7.87 -92.71 -0.73 7.89 16 40 H 0.20 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.19 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.19 -0.53 8.06 -2.91 -0.02 -0.55 16 43 H 0.18 -0.28 8.06 -2.91 -0.02 -0.31 16 44 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.09 1.92 7.94 -2.39 -0.02 1.90 16 Total: -1.00 -85.98 381.05 0.69 -85.29 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.27 Total: 24.63 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.20 Total: 6.22 kcal Atomic # 7 Polarization: -138.67 SS G_CDS: -7.09 Total: -145.76 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -85.98 0.69 -85.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507399027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.223 kcal (2) G-P(sol) polarization free energy of solvation -85.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds