Wall clock time and date at job start Tue Mar 31 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99792 * 2 1 4 4 C 1.53003 * 109.47127 * 90.00014 * 3 2 1 5 5 N 1.46500 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00170 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00141 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.53950 * 113.57771 * 80.75936 * 8 6 5 10 10 C 1.53159 * 86.69660 * 139.37686 * 9 8 6 11 11 C 1.52906 * 121.13989 * 100.81522 * 10 9 8 12 12 C 1.53949 * 86.78398 * 100.82555 * 11 10 9 13 13 C 1.52908 * 121.14128 * 209.38149 * 10 9 8 14 14 C 1.52914 * 88.03442 * 335.09777 * 10 9 8 15 15 C 1.34779 * 120.00171 * 180.02562 * 2 1 3 16 16 O 1.21278 * 119.99962 * 180.02562 * 15 2 1 17 17 C 1.50692 * 120.00039 * 359.97438 * 15 2 1 18 18 S 1.81002 * 109.47436 * 180.02562 * 17 15 2 19 19 C 1.76195 * 100.00093 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00087 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99951 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99891 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00181 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47092 * 90.00108 * 23 21 19 25 25 H 1.48502 * 109.46891 * 210.00244 * 23 21 19 26 26 H 1.48498 * 109.46837 * 330.00068 * 23 21 19 27 27 H 1.08996 * 109.47265 * 90.00052 * 1 2 3 28 28 H 1.09004 * 109.47180 * 210.00027 * 1 2 3 29 29 H 1.09001 * 109.47542 * 329.99376 * 1 2 3 30 30 H 1.08994 * 109.47318 * 330.00542 * 3 2 1 31 31 H 1.08996 * 109.47088 * 209.99539 * 3 2 1 32 32 H 1.09002 * 109.46825 * 60.00136 * 4 3 2 33 33 H 1.09004 * 109.47231 * 300.00120 * 4 3 2 34 34 H 0.96996 * 119.99481 * 0.02562 * 5 4 3 35 35 H 1.09002 * 112.82235 * 309.66867 * 8 6 5 36 36 H 1.09004 * 113.66202 * 253.88712 * 9 8 6 37 37 H 1.08998 * 113.66740 * 24.93903 * 9 8 6 38 38 H 1.08998 * 113.66290 * 215.29885 * 11 10 9 39 39 H 1.08999 * 113.66439 * 346.35096 * 11 10 9 40 40 H 1.09000 * 113.57955 * 270.13047 * 12 11 10 41 41 H 1.08999 * 113.65113 * 139.34661 * 12 11 10 42 42 H 1.09002 * 113.66204 * 13.64659 * 13 10 9 43 43 H 1.09003 * 113.66133 * 144.69680 * 13 10 9 44 44 H 1.08995 * 113.66233 * 270.42754 * 14 10 9 45 45 H 1.08998 * 113.74404 * 139.37723 * 14 10 9 46 46 H 1.08999 * 109.47651 * 300.00534 * 17 15 2 47 47 H 1.09000 * 109.46929 * 60.00427 * 17 15 2 48 48 H 0.97002 * 120.00172 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 7 3.1854 2.9789 1.4426 6 6 3.5219 3.5627 2.6098 7 8 3.2184 3.0377 3.6601 8 6 4.2754 4.8678 2.6098 9 6 3.3773 6.0974 2.3828 10 6 4.2186 6.7990 3.4531 11 6 5.3230 7.7849 3.0703 12 6 4.3228 8.9041 3.4123 13 6 3.6203 7.8937 4.3373 14 6 4.5525 5.4188 4.0204 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4416 -5.2082 -0.0013 20 1 0.3763 -5.0305 -0.0012 21 6 1.9283 -6.5080 -0.0020 22 7 3.2267 -6.7246 -0.0017 23 14 0.7409 -7.9501 -0.0021 24 1 0.4257 -8.3316 -1.4022 25 1 1.3626 -9.1032 0.6972 26 1 -0.5094 -7.5617 0.6986 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1498 1.1384 -0.5137 32 1 3.0415 0.9508 1.9563 33 1 1.4999 1.8407 1.9564 34 1 3.4278 3.3989 0.6026 35 1 5.1568 4.8471 1.9688 36 1 3.4775 6.5349 1.3894 37 1 2.3390 5.9409 2.6754 38 1 6.1873 7.7528 3.7336 39 1 5.5952 7.7488 2.0154 40 1 3.7125 9.2174 2.5653 41 1 4.7709 9.7435 3.9440 42 1 2.5323 7.9446 4.2947 43 1 4.0060 7.8921 5.3568 44 1 3.8441 5.0719 4.7725 45 1 5.5907 5.3131 4.3351 46 1 0.7591 -2.5303 0.8896 47 1 0.7585 -2.5298 -0.8903 48 1 3.5669 -7.6330 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528532787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:16 Heat of formation + Delta-G solvation = -34.102858 kcal Electronic energy + Delta-G solvation = -26214.136842 eV Core-core repulsion = 22396.615549 eV Total energy + Delta-G solvation = -3817.521293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.20721 -39.70370 -39.07456 -36.02519 -34.97412 -34.57178 -32.43179 -30.75330 -28.50040 -26.80482 -26.20285 -26.18628 -25.65568 -25.36737 -23.14258 -21.94680 -20.34464 -19.16954 -18.39025 -17.71213 -17.48006 -16.74304 -16.48551 -16.04839 -15.74396 -15.54225 -15.37753 -15.07778 -14.80612 -14.59685 -13.92935 -13.84238 -13.36456 -13.21797 -13.18631 -12.99074 -12.88044 -12.57528 -12.52472 -12.44239 -12.36628 -12.31375 -11.82414 -11.48105 -11.44062 -11.28415 -11.06551 -11.02836 -10.76339 -10.70669 -10.52071 -10.42450 -9.86046 -9.81344 -9.43981 -9.25223 -9.06909 -8.67270 -8.23893 -6.50990 -6.21922 -3.92806 2.44593 2.63421 2.97878 3.14908 3.22317 3.28360 3.32370 3.61843 3.92615 4.02251 4.14719 4.19808 4.25585 4.33678 4.40480 4.66100 4.70210 4.89329 4.94267 5.01181 5.06417 5.07207 5.13297 5.22030 5.24551 5.29352 5.31022 5.39819 5.41363 5.47534 5.52406 5.53889 5.54671 5.64074 5.65589 5.78131 5.83598 5.89217 5.90824 5.99138 6.08094 6.11263 6.18198 6.54768 7.28230 7.42139 7.59220 8.05434 8.34742 8.47727 9.23330 10.85509 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031491 B = 0.001624 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.931831 B =17241.535985 C =17525.115123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.109 3.891 4 C 0.102 3.898 5 N -0.726 5.726 6 C 0.522 3.478 7 O -0.536 6.536 8 C -0.135 4.135 9 C -0.096 4.096 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.141 4.141 13 C -0.127 4.127 14 C -0.103 4.103 15 C 0.533 3.467 16 O -0.512 6.512 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 31.630 2.394 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.360 5.360 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.378 5.378 6 C 0.308 3.692 7 O -0.412 6.412 8 C -0.156 4.156 9 C -0.134 4.134 10 C -0.108 4.108 11 C -0.154 4.154 12 C -0.178 4.178 13 C -0.164 4.164 14 C -0.141 4.141 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.545 31.075 3.156 31.240 hybrid contribution -2.143 -0.830 -0.480 2.348 sum -2.688 30.245 2.676 30.482 Atomic orbital electron populations 1.21808 0.79256 1.03358 1.01927 1.47747 1.06970 1.05178 1.76062 1.21431 0.98828 0.85783 0.95447 1.21769 0.96981 0.85494 0.98075 1.45871 1.58901 1.24242 1.08819 1.20512 0.79248 0.86000 0.83467 1.90718 1.54393 1.64749 1.31389 1.22752 0.99882 0.91582 1.01402 1.22635 0.98279 0.93549 0.98923 1.22475 0.97763 0.93135 0.97468 1.22663 0.96297 0.94824 1.01591 1.22826 0.98455 0.96701 0.99809 1.22746 1.00133 0.95296 0.98275 1.22703 1.02698 0.93590 0.95066 1.20423 0.87976 0.84588 0.74894 1.90705 1.13717 1.86722 1.47385 1.23558 1.04606 0.97076 1.04841 1.85410 1.08013 0.93344 1.96713 1.22856 0.94300 0.92190 1.59030 0.90913 1.24992 0.95675 0.98377 0.94508 1.70019 1.11749 1.21680 1.46801 0.86164 0.80269 0.80712 0.78334 1.20271 1.20739 1.19685 0.92483 0.90412 0.91342 0.90282 0.89171 0.90646 0.91465 0.76609 0.86873 0.90473 0.89357 0.89689 0.91262 0.90268 0.91515 0.91387 0.89834 0.88488 0.90845 0.89105 0.89146 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.24 59.84 0.61 1.39 16 2 N -0.62 -8.37 2.87 -181.58 -0.52 -8.89 16 3 C 0.11 1.18 5.52 -4.04 -0.02 1.16 16 4 C 0.10 1.20 6.00 -4.04 -0.02 1.18 16 5 N -0.73 -6.88 5.56 -60.29 -0.33 -7.22 16 6 C 0.52 5.86 7.35 -10.99 -0.08 5.78 16 7 O -0.54 -8.50 15.90 5.56 0.09 -8.41 16 8 C -0.13 -1.03 4.14 -90.79 -0.38 -1.41 16 9 C -0.10 -0.58 7.41 -26.15 -0.19 -0.78 16 10 C -0.11 -0.67 1.11 -154.58 -0.17 -0.85 16 11 C -0.12 -0.60 7.84 -26.28 -0.21 -0.81 16 12 C -0.14 -0.69 8.08 -25.75 -0.21 -0.90 16 13 C -0.13 -0.74 7.84 -26.28 -0.21 -0.95 16 14 C -0.10 -0.84 7.16 -26.28 -0.19 -1.02 16 15 C 0.53 9.97 7.69 -10.99 -0.08 9.89 16 16 O -0.51 -11.52 15.44 5.56 0.09 -11.43 16 17 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 29 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.09 1.10 7.42 -51.93 -0.39 0.71 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.40 2.49 8.47 -40.82 -0.35 2.14 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.97 7.44 -51.93 -0.39 0.59 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.71 7.40 -51.92 -0.38 1.32 16 47 H 0.09 1.68 8.11 -51.92 -0.42 1.25 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -36.76 407.88 -9.95 -46.71 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.13 Total: -0.80 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.78 Total: -3.13 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.12 Total: -41.59 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.76 -9.95 -46.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528532787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.611 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds