Wall clock time and date at job start Tue Mar 31 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99792 * 2 1 4 4 C 1.53003 * 109.47127 * 90.00014 * 3 2 1 5 5 N 1.46500 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00170 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00141 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.53950 * 113.57771 * 80.75936 * 8 6 5 10 10 C 1.53159 * 86.69660 * 139.37686 * 9 8 6 11 11 C 1.52906 * 121.13989 * 100.81522 * 10 9 8 12 12 C 1.53949 * 86.78398 * 100.82555 * 11 10 9 13 13 C 1.52908 * 121.14128 * 209.38149 * 10 9 8 14 14 C 1.52914 * 88.03442 * 335.09777 * 10 9 8 15 15 C 1.34779 * 120.00171 * 180.02562 * 2 1 3 16 16 O 1.21278 * 119.99962 * 180.02562 * 15 2 1 17 17 C 1.50692 * 120.00039 * 359.97438 * 15 2 1 18 18 S 1.81002 * 109.47436 * 180.02562 * 17 15 2 19 19 C 1.76195 * 100.00093 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00087 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99951 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99891 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00181 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47092 * 90.00108 * 23 21 19 25 25 H 1.48502 * 109.46891 * 210.00244 * 23 21 19 26 26 H 1.48498 * 109.46837 * 330.00068 * 23 21 19 27 27 H 1.08996 * 109.47265 * 90.00052 * 1 2 3 28 28 H 1.09004 * 109.47180 * 210.00027 * 1 2 3 29 29 H 1.09001 * 109.47542 * 329.99376 * 1 2 3 30 30 H 1.08994 * 109.47318 * 330.00542 * 3 2 1 31 31 H 1.08996 * 109.47088 * 209.99539 * 3 2 1 32 32 H 1.09002 * 109.46825 * 60.00136 * 4 3 2 33 33 H 1.09004 * 109.47231 * 300.00120 * 4 3 2 34 34 H 0.96996 * 119.99481 * 0.02562 * 5 4 3 35 35 H 1.09002 * 112.82235 * 309.66867 * 8 6 5 36 36 H 1.09004 * 113.66202 * 253.88712 * 9 8 6 37 37 H 1.08998 * 113.66740 * 24.93903 * 9 8 6 38 38 H 1.08998 * 113.66290 * 215.29885 * 11 10 9 39 39 H 1.08999 * 113.66439 * 346.35096 * 11 10 9 40 40 H 1.09000 * 113.57955 * 270.13047 * 12 11 10 41 41 H 1.08999 * 113.65113 * 139.34661 * 12 11 10 42 42 H 1.09002 * 113.66204 * 13.64659 * 13 10 9 43 43 H 1.09003 * 113.66133 * 144.69680 * 13 10 9 44 44 H 1.08995 * 113.66233 * 270.42754 * 14 10 9 45 45 H 1.08998 * 113.74404 * 139.37723 * 14 10 9 46 46 H 1.08999 * 109.47651 * 300.00534 * 17 15 2 47 47 H 1.09000 * 109.46929 * 60.00427 * 17 15 2 48 48 H 0.97002 * 120.00172 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 7 3.1854 2.9789 1.4426 6 6 3.5219 3.5627 2.6098 7 8 3.2184 3.0377 3.6601 8 6 4.2754 4.8678 2.6098 9 6 3.3773 6.0974 2.3828 10 6 4.2186 6.7990 3.4531 11 6 5.3230 7.7849 3.0703 12 6 4.3228 8.9041 3.4123 13 6 3.6203 7.8937 4.3373 14 6 4.5525 5.4188 4.0204 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4416 -5.2082 -0.0013 20 1 0.3763 -5.0305 -0.0012 21 6 1.9283 -6.5080 -0.0020 22 7 3.2267 -6.7246 -0.0017 23 14 0.7409 -7.9501 -0.0021 24 1 0.4257 -8.3316 -1.4022 25 1 1.3626 -9.1032 0.6972 26 1 -0.5094 -7.5617 0.6986 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1498 1.1384 -0.5137 32 1 3.0415 0.9508 1.9563 33 1 1.4999 1.8407 1.9564 34 1 3.4278 3.3989 0.6026 35 1 5.1568 4.8471 1.9688 36 1 3.4775 6.5349 1.3894 37 1 2.3390 5.9409 2.6754 38 1 6.1873 7.7528 3.7336 39 1 5.5952 7.7488 2.0154 40 1 3.7125 9.2174 2.5653 41 1 4.7709 9.7435 3.9440 42 1 2.5323 7.9446 4.2947 43 1 4.0060 7.8921 5.3568 44 1 3.8441 5.0719 4.7725 45 1 5.5907 5.3131 4.3351 46 1 0.7591 -2.5303 0.8896 47 1 0.7585 -2.5298 -0.8903 48 1 3.5669 -7.6330 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528532787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:14 Heat of formation + Delta-G solvation = -58.792391 kcal Electronic energy + Delta-G solvation = -26215.207460 eV Core-core repulsion = 22396.615549 eV Total energy + Delta-G solvation = -3818.591912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.84888 -40.94920 -39.97319 -37.19778 -35.65691 -35.54878 -34.59400 -31.97776 -29.78234 -27.71582 -27.65324 -26.77961 -26.64388 -26.25168 -24.05761 -22.63717 -21.23939 -20.48201 -19.54875 -18.89738 -18.31483 -18.05696 -17.54307 -16.91590 -16.86483 -16.71248 -16.54176 -16.09786 -15.98318 -15.74501 -15.47129 -14.86387 -14.47196 -14.35851 -14.30999 -13.92516 -13.71152 -13.58724 -13.49963 -13.26259 -13.17431 -13.06878 -13.00365 -12.90687 -12.88601 -12.64719 -12.38626 -11.92074 -11.80545 -11.72992 -11.28498 -11.14909 -11.04178 -10.98655 -10.95579 -10.58598 -10.28281 -10.20142 -9.80394 -8.68852 -8.35501 -6.14174 1.23050 1.42111 1.43207 1.50592 1.55469 1.56376 1.88937 2.26337 2.42487 2.98756 3.25090 3.40568 3.49199 3.58964 3.67010 3.67869 3.80095 3.88002 3.99452 4.01046 4.18440 4.21628 4.31077 4.36122 4.41703 4.46777 4.59756 4.68735 4.72049 4.73950 4.81017 4.87718 4.90025 4.93425 4.95316 5.01012 5.06332 5.10676 5.15202 5.26945 5.36574 5.40759 5.52086 5.54182 5.62933 6.17845 6.19930 6.50495 7.05640 7.08488 7.22001 8.73800 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031491 B = 0.001624 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.931831 B =17241.535985 C =17525.115123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.113 3.887 4 C 0.111 3.889 5 N -0.711 5.711 6 C 0.516 3.484 7 O -0.591 6.591 8 C -0.129 4.129 9 C -0.085 4.085 10 C -0.106 4.106 11 C -0.113 4.113 12 C -0.135 4.135 13 C -0.134 4.134 14 C -0.114 4.114 15 C 0.530 3.470 16 O -0.562 6.562 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.258 1.258 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.420 0.580 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 33.822 0.878 34.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.010 4.010 4 C -0.015 4.015 5 N -0.364 5.364 6 C 0.304 3.696 7 O -0.471 6.471 8 C -0.150 4.150 9 C -0.123 4.123 10 C -0.106 4.106 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.171 4.171 14 C -0.151 4.151 15 C 0.317 3.683 16 O -0.440 6.440 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.182 1.182 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.154 0.846 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.822 33.336 1.598 33.493 hybrid contribution -1.486 -1.374 0.034 2.024 sum -4.308 31.962 1.632 32.293 Atomic orbital electron populations 1.22156 0.76431 1.04790 1.03833 1.47732 1.08692 1.04343 1.73609 1.21613 0.99103 0.85452 0.94836 1.21516 0.96347 0.85299 0.98303 1.45731 1.57994 1.23168 1.09493 1.21228 0.78651 0.86798 0.82892 1.90696 1.56618 1.66387 1.33371 1.22848 1.00640 0.89983 1.01527 1.22602 0.97348 0.92139 1.00185 1.22498 0.98472 0.92181 0.97414 1.22676 0.95936 0.94067 1.02328 1.22818 0.98169 0.96519 0.99702 1.22795 1.00155 0.95788 0.98383 1.22707 1.01993 0.95496 0.94952 1.20207 0.87310 0.85642 0.75105 1.90687 1.15674 1.87471 1.50163 1.23382 1.02739 0.94924 1.06498 1.85596 1.12759 0.97432 1.97043 1.23198 0.94631 0.92607 1.58940 0.89829 1.26142 0.97602 1.01713 0.93684 1.70189 1.14157 1.22478 1.47982 0.84940 0.77847 0.76249 0.78864 1.19127 1.20388 1.18185 0.90228 0.90927 0.88149 0.85192 0.90505 0.95443 0.91193 0.74297 0.84556 0.87827 0.90218 0.89700 0.90053 0.89435 0.91037 0.91572 0.90248 0.91167 0.90848 0.87571 0.87050 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.24 127.77 1.31 2.41 16 2 N -0.61 -15.21 2.87 -846.79 -2.43 -17.64 16 3 C 0.11 2.20 5.52 86.38 0.48 2.68 16 4 C 0.11 2.56 6.00 86.38 0.52 3.08 16 5 N -0.71 -12.64 5.56 -463.06 -2.57 -15.21 16 6 C 0.52 11.54 7.35 87.66 0.64 12.18 16 7 O -0.59 -19.62 15.90 -3.03 -0.05 -19.67 16 8 C -0.13 -1.82 4.14 -10.90 -0.05 -1.86 16 9 C -0.09 -0.84 7.41 30.97 0.23 -0.61 16 10 C -0.11 -1.16 1.11 -52.23 -0.06 -1.22 16 11 C -0.11 -0.91 7.84 30.88 0.24 -0.66 16 12 C -0.13 -1.03 8.08 31.23 0.25 -0.78 16 13 C -0.13 -1.42 7.84 30.88 0.24 -1.18 16 14 C -0.11 -1.86 7.16 30.89 0.22 -1.64 16 15 C 0.53 19.82 7.69 87.65 0.67 20.49 16 16 O -0.56 -26.26 15.44 -3.02 -0.05 -26.31 16 17 C -0.12 -4.99 4.71 71.23 0.34 -4.66 16 18 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 19 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 23 Si 1.00 43.80 29.55 68.60 2.03 45.82 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.27 6.44 -2.38 -0.02 1.26 16 29 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 30 H 0.13 1.30 8.07 -2.39 -0.02 1.28 16 31 H 0.08 1.78 7.42 -2.39 -0.02 1.76 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.42 4.13 8.47 -92.71 -0.79 3.34 16 35 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.53 7.44 -2.39 -0.02 1.51 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.11 3.91 7.40 -2.40 -0.02 3.89 16 47 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 48 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -86.13 407.88 2.37 -83.76 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.16 Total: 16.69 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.15 Total: -1.30 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -4.72 Total: -89.08 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.09 Total: -45.97 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -86.13 2.37 -83.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528532787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.966 kcal (2) G-P(sol) polarization free energy of solvation -86.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds