Wall clock time and date at job start Tue Mar 31 2020 23:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00180 * 2 1 4 4 C 1.47205 * 109.47222 * 180.02562 * 3 2 1 5 5 C 3.40061 * 161.19038 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18613 * 0.02562 * 2 1 3 7 7 N 1.46897 * 109.47404 * 328.80087 * 6 5 4 8 8 C 1.46905 * 111.00268 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47260 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.53781 * 52.38851 * 9 8 7 11 11 C 1.54269 * 110.48856 * 289.77577 * 9 8 7 12 12 C 1.53876 * 106.60115 * 217.71173 * 11 9 8 13 13 C 1.54266 * 106.59514 * 359.97438 * 12 11 9 14 14 C 1.54886 * 104.19976 * 23.60807 * 13 12 11 15 15 H 1.09003 * 110.91258 * 80.44475 * 14 13 12 16 16 N 1.46499 * 110.76011 * 203.74084 * 14 13 12 17 17 C 1.34777 * 120.00199 * 268.33356 * 16 14 13 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 14 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47035 * 59.99524 * 25 23 21 27 27 H 1.48499 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46580 * 299.99884 * 25 23 21 29 29 H 1.08994 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47025 * 300.00314 * 1 2 3 31 31 H 1.09002 * 109.46769 * 59.99837 * 1 2 3 32 32 H 1.09001 * 109.47414 * 60.00338 * 3 2 1 33 33 H 1.08997 * 109.47511 * 299.99486 * 3 2 1 34 34 H 1.09005 * 109.47258 * 208.80164 * 6 5 4 35 35 H 1.09000 * 109.47474 * 88.80093 * 6 5 4 36 36 H 1.00900 * 110.99976 * 56.04823 * 7 6 5 37 37 H 1.09005 * 109.46923 * 60.00192 * 8 7 6 38 38 H 1.08994 * 109.47068 * 299.99979 * 8 7 6 39 39 H 1.09001 * 110.02869 * 336.99995 * 11 9 8 40 40 H 1.08996 * 110.03335 * 98.42824 * 11 9 8 41 41 H 1.09003 * 110.03242 * 119.28333 * 12 11 9 42 42 H 1.08997 * 110.03303 * 240.71550 * 12 11 9 43 43 H 1.09001 * 110.48658 * 264.92722 * 13 12 11 44 44 H 1.09002 * 110.48488 * 142.29248 * 13 12 11 45 45 H 0.97000 * 119.99484 * 88.32453 * 16 14 13 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6479 1.0964 0.0005 6 6 6.1153 0.9802 0.0004 7 7 6.5100 -0.2394 0.7178 8 6 7.9713 -0.3884 0.7386 9 6 8.3430 -1.6665 1.4931 10 1 7.7993 -2.5206 1.0895 11 6 8.0554 -1.5067 3.0003 12 6 9.1922 -2.2295 3.7438 13 6 10.1306 -2.8039 2.6625 14 6 9.8700 -1.9142 1.4217 15 1 10.4172 -0.9744 1.4950 16 7 10.2241 -2.6241 0.1901 17 6 11.4646 -2.5055 -0.3232 18 8 12.2876 -1.8106 0.2342 19 6 11.8269 -3.2308 -1.5936 20 16 13.5463 -2.8671 -2.0266 21 6 13.6968 -3.8153 -3.5040 22 1 12.8548 -4.3852 -3.8681 23 6 14.8973 -3.8291 -4.2005 24 7 15.9232 -3.1333 -3.7576 25 14 15.0568 -4.8338 -5.7672 26 1 14.0681 -4.3538 -6.7658 27 1 16.4285 -4.6817 -6.3153 28 1 14.8007 -6.2651 -5.4655 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 6.5487 1.8493 0.4955 35 1 6.4759 0.9301 -1.0270 36 1 6.0689 -1.0535 0.3169 37 1 8.4171 0.4712 1.2391 38 1 8.3450 -0.4478 -0.2835 39 1 8.0461 -0.4503 3.2687 40 1 7.0974 -1.9637 3.2482 41 1 9.7348 -1.5239 4.3731 42 1 8.7859 -3.0374 4.3525 43 1 9.8755 -3.8417 2.4481 44 1 11.1708 -2.7232 2.9781 45 1 9.5657 -3.1796 -0.2558 46 1 11.7088 -4.3043 -1.4453 47 1 11.1716 -2.9011 -2.3997 48 1 16.7623 -3.1431 -4.2441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568520195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:33 Heat of formation + Delta-G solvation = -45.143473 kcal Electronic energy + Delta-G solvation = -25578.583159 eV Core-core repulsion = 21760.583109 eV Total energy + Delta-G solvation = -3818.000050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.82335 -38.44690 -38.11587 -36.44382 -33.68461 -33.41387 -32.42600 -30.59458 -29.64892 -28.49425 -27.09535 -26.50597 -25.46945 -25.12086 -23.24591 -20.92706 -20.58524 -19.84676 -17.97566 -17.69739 -16.94973 -16.70104 -16.47569 -16.37720 -16.03042 -15.51723 -15.10337 -14.89119 -14.80472 -14.61589 -14.23723 -13.80267 -13.71648 -13.59700 -13.27928 -13.08215 -13.05227 -12.72555 -12.39530 -12.28044 -12.10811 -11.85797 -11.35787 -11.25029 -11.09271 -11.04576 -11.03875 -10.83463 -10.76888 -10.70010 -10.52831 -10.49119 -9.96170 -9.81884 -9.37473 -9.06090 -8.82956 -8.79746 -8.23728 -6.49672 -6.21383 -3.91983 1.95705 2.30812 3.04718 3.10168 3.23430 3.27638 3.31624 3.44842 3.71237 3.75584 4.14566 4.20790 4.45002 4.55105 4.61374 4.65977 4.77328 4.84430 4.92275 5.00321 5.05413 5.12210 5.13635 5.17178 5.18914 5.25055 5.26967 5.32919 5.39756 5.41281 5.50668 5.58606 5.67308 5.68662 5.88688 5.90470 5.96895 6.12786 6.13965 6.18758 6.26130 6.54528 6.56097 6.71738 6.95218 7.21609 7.59323 7.74020 8.35082 8.63895 9.23783 10.85942 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.001816 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.137439 B =15418.286692 C =17214.933764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.180 3.820 4 C -0.186 4.186 5 C -0.141 4.141 6 C 0.168 3.832 7 N -0.683 5.683 8 C 0.064 3.936 9 C -0.094 4.094 10 H 0.079 0.921 11 C -0.104 4.104 12 C -0.125 4.125 13 C -0.135 4.135 14 C 0.147 3.853 15 H 0.098 0.902 16 N -0.732 5.732 17 C 0.533 3.467 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.345 0.655 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.637 6.559 11.292 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.104 3.896 4 C -0.188 4.188 5 C -0.142 4.142 6 C 0.040 3.960 7 N -0.315 5.315 8 C -0.064 4.064 9 C -0.114 4.114 10 H 0.097 0.903 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.174 4.174 14 C 0.041 3.959 15 H 0.116 0.884 16 N -0.385 5.385 17 C 0.319 3.681 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.230 0.770 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.954 7.924 12.808 30.876 hybrid contribution -1.255 -1.786 -2.826 3.570 sum -28.209 6.138 9.983 30.546 Atomic orbital electron populations 1.22800 0.80134 1.03330 1.00269 1.87977 1.20182 1.26865 1.95509 1.19036 0.83721 0.85448 1.01374 1.21626 0.92787 1.02213 1.02152 1.22176 0.93418 0.98129 1.00476 1.18865 0.84357 0.95039 0.97728 1.60446 1.08463 1.04747 1.57810 1.22077 0.86714 0.98362 0.99272 1.22212 0.95044 0.97349 0.96781 0.90281 1.22004 0.98292 1.01073 0.92840 1.22121 0.96554 0.99864 0.97798 1.22735 1.00322 0.99449 0.94929 1.21902 0.93801 0.96347 0.83816 0.88425 1.46013 1.13864 1.51535 1.27121 1.20307 0.81304 0.80975 0.85528 1.90698 1.48488 1.38751 1.61170 1.23538 1.07305 1.02780 0.96847 1.85385 1.02133 1.64373 1.31388 1.22834 1.01042 1.33960 1.10673 0.91010 1.24984 0.94763 0.95656 0.98115 1.70009 1.02445 1.38797 1.39030 0.86233 0.77444 0.80104 0.81772 1.19961 1.20793 1.19944 0.89156 0.93669 0.93709 0.90821 0.90915 0.88381 0.92348 0.83646 0.90248 0.94289 0.91260 0.91471 0.91693 0.91850 0.91354 0.90945 0.76959 0.89283 0.89358 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.36 10.66 -35.23 -0.38 -3.74 16 3 C 0.18 1.28 6.41 34.37 0.22 1.50 16 4 C -0.19 -1.84 13.73 -37.12 -0.51 -2.35 16 5 C -0.14 -1.40 13.60 -37.12 -0.50 -1.90 16 6 C 0.17 1.37 6.16 -6.61 -0.04 1.33 16 7 N -0.68 -5.73 6.36 -116.89 -0.74 -6.47 16 8 C 0.06 0.55 5.01 -3.82 -0.02 0.54 16 9 C -0.09 -0.82 2.65 -88.98 -0.24 -1.05 16 10 H 0.08 0.63 8.02 -51.93 -0.42 0.22 16 11 C -0.10 -0.87 6.26 -25.61 -0.16 -1.03 16 12 C -0.13 -1.10 6.80 -25.61 -0.17 -1.28 16 13 C -0.14 -1.48 6.51 -25.07 -0.16 -1.65 16 14 C 0.15 1.69 2.69 -65.95 -0.18 1.51 16 15 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 16 N -0.73 -9.48 5.18 -51.89 -0.27 -9.75 16 17 C 0.53 9.76 7.85 -10.98 -0.09 9.68 16 18 O -0.52 -11.57 15.51 5.55 0.09 -11.48 16 19 C -0.15 -3.09 6.16 36.01 0.22 -2.86 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 25 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.35 2.82 8.71 -39.29 -0.34 2.47 16 37 H 0.08 0.70 7.95 -51.93 -0.41 0.29 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.40 4.05 8.57 -40.82 -0.35 3.70 16 46 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 47 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 418.88 15.07 6.31 6.31 Total: -1.00 -35.34 418.88 -10.00 -45.35 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.19 Total: 1.95 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.32 Total: -9.30 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.28 Total: -41.67 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.29 Total: -15.22 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.34 -10.00 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568520195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.206 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds