Wall clock time and date at job start Tue Mar 31 2020 23:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00180 * 2 1 4 4 C 1.47205 * 109.47222 * 180.02562 * 3 2 1 5 5 C 3.40061 * 161.19038 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18613 * 0.02562 * 2 1 3 7 7 N 1.46897 * 109.47404 * 328.80087 * 6 5 4 8 8 C 1.46905 * 111.00268 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47260 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.53781 * 52.38851 * 9 8 7 11 11 C 1.54269 * 110.48856 * 289.77577 * 9 8 7 12 12 C 1.53876 * 106.60115 * 217.71173 * 11 9 8 13 13 C 1.54266 * 106.59514 * 359.97438 * 12 11 9 14 14 C 1.54886 * 104.19976 * 23.60807 * 13 12 11 15 15 H 1.09003 * 110.91258 * 80.44475 * 14 13 12 16 16 N 1.46499 * 110.76011 * 203.74084 * 14 13 12 17 17 C 1.34777 * 120.00199 * 268.33356 * 16 14 13 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 14 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47035 * 59.99524 * 25 23 21 27 27 H 1.48499 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46580 * 299.99884 * 25 23 21 29 29 H 1.08994 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47025 * 300.00314 * 1 2 3 31 31 H 1.09002 * 109.46769 * 59.99837 * 1 2 3 32 32 H 1.09001 * 109.47414 * 60.00338 * 3 2 1 33 33 H 1.08997 * 109.47511 * 299.99486 * 3 2 1 34 34 H 1.09005 * 109.47258 * 208.80164 * 6 5 4 35 35 H 1.09000 * 109.47474 * 88.80093 * 6 5 4 36 36 H 1.00900 * 110.99976 * 56.04823 * 7 6 5 37 37 H 1.09005 * 109.46923 * 60.00192 * 8 7 6 38 38 H 1.08994 * 109.47068 * 299.99979 * 8 7 6 39 39 H 1.09001 * 110.02869 * 336.99995 * 11 9 8 40 40 H 1.08996 * 110.03335 * 98.42824 * 11 9 8 41 41 H 1.09003 * 110.03242 * 119.28333 * 12 11 9 42 42 H 1.08997 * 110.03303 * 240.71550 * 12 11 9 43 43 H 1.09001 * 110.48658 * 264.92722 * 13 12 11 44 44 H 1.09002 * 110.48488 * 142.29248 * 13 12 11 45 45 H 0.97000 * 119.99484 * 88.32453 * 16 14 13 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6479 1.0964 0.0005 6 6 6.1153 0.9802 0.0004 7 7 6.5100 -0.2394 0.7178 8 6 7.9713 -0.3884 0.7386 9 6 8.3430 -1.6665 1.4931 10 1 7.7993 -2.5206 1.0895 11 6 8.0554 -1.5067 3.0003 12 6 9.1922 -2.2295 3.7438 13 6 10.1306 -2.8039 2.6625 14 6 9.8700 -1.9142 1.4217 15 1 10.4172 -0.9744 1.4950 16 7 10.2241 -2.6241 0.1901 17 6 11.4646 -2.5055 -0.3232 18 8 12.2876 -1.8106 0.2342 19 6 11.8269 -3.2308 -1.5936 20 16 13.5463 -2.8671 -2.0266 21 6 13.6968 -3.8153 -3.5040 22 1 12.8548 -4.3852 -3.8681 23 6 14.8973 -3.8291 -4.2005 24 7 15.9232 -3.1333 -3.7576 25 14 15.0568 -4.8338 -5.7672 26 1 14.0681 -4.3538 -6.7658 27 1 16.4285 -4.6817 -6.3153 28 1 14.8007 -6.2651 -5.4655 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 6.5487 1.8493 0.4955 35 1 6.4759 0.9301 -1.0270 36 1 6.0689 -1.0535 0.3169 37 1 8.4171 0.4712 1.2391 38 1 8.3450 -0.4478 -0.2835 39 1 8.0461 -0.4503 3.2687 40 1 7.0974 -1.9637 3.2482 41 1 9.7348 -1.5239 4.3731 42 1 8.7859 -3.0374 4.3525 43 1 9.8755 -3.8417 2.4481 44 1 11.1708 -2.7232 2.9781 45 1 9.5657 -3.1796 -0.2558 46 1 11.7088 -4.3043 -1.4453 47 1 11.1716 -2.9011 -2.3997 48 1 16.7623 -3.1431 -4.2441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568520195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:32 Heat of formation + Delta-G solvation = -70.255183 kcal Electronic energy + Delta-G solvation = -25579.672084 eV Core-core repulsion = 21760.583109 eV Total energy + Delta-G solvation = -3819.088976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.99789 -39.24237 -38.93814 -37.19373 -34.78721 -34.57793 -34.23621 -31.31046 -31.08402 -29.05985 -28.18173 -27.57895 -27.01415 -25.75241 -23.97481 -22.09936 -21.57305 -20.80901 -19.77942 -18.50530 -17.86084 -17.64283 -17.40690 -16.94951 -16.87912 -16.78146 -16.40163 -16.29815 -15.94317 -15.80800 -15.33723 -14.98508 -14.60015 -14.49973 -14.31458 -14.18532 -13.79106 -13.69807 -13.59546 -13.24748 -13.16806 -12.93570 -12.85853 -12.61656 -12.53578 -12.25762 -12.03320 -11.82017 -11.76731 -11.65672 -11.33800 -11.24166 -11.15261 -11.13094 -10.91978 -10.50361 -10.27814 -10.02758 -9.46928 -8.66469 -8.34573 -6.12695 1.26832 1.29507 1.43435 1.46789 1.56646 1.61603 1.62864 2.26301 2.31479 2.90509 2.99394 3.08140 3.32102 3.51837 3.65538 3.79098 3.84199 4.02776 4.22365 4.27450 4.29449 4.32675 4.42048 4.47042 4.49310 4.51593 4.52910 4.54961 4.56348 4.60157 4.61836 4.70454 4.73213 4.83961 4.88622 4.92365 5.14330 5.20412 5.23447 5.34817 5.41308 5.52821 5.62410 5.86589 6.13366 6.19359 6.30708 6.52612 6.53779 7.06558 7.27681 8.74316 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.001816 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.137439 B =15418.286692 C =17214.933764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.174 3.826 4 C -0.201 4.201 5 C -0.162 4.162 6 C 0.168 3.832 7 N -0.682 5.682 8 C 0.070 3.930 9 C -0.081 4.081 10 H 0.096 0.904 11 C -0.098 4.098 12 C -0.119 4.119 13 C -0.135 4.135 14 C 0.143 3.857 15 H 0.074 0.926 16 N -0.705 5.705 17 C 0.535 3.465 18 O -0.565 6.565 19 C -0.130 4.130 20 S -0.150 6.150 21 C -0.549 4.549 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.348 0.652 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.415 0.585 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.560 5.499 10.866 33.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.099 3.901 4 C -0.202 4.202 5 C -0.163 4.163 6 C 0.041 3.959 7 N -0.314 5.314 8 C -0.059 4.059 9 C -0.100 4.100 10 H 0.114 0.886 11 C -0.136 4.136 12 C -0.157 4.157 13 C -0.173 4.173 14 C 0.038 3.962 15 H 0.093 0.907 16 N -0.358 5.358 17 C 0.321 3.679 18 O -0.443 6.443 19 C -0.281 4.281 20 S 0.077 5.923 21 C -0.697 4.697 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.166 0.834 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.950 6.849 12.396 33.130 hybrid contribution -0.479 -1.427 -2.603 3.007 sum -30.429 5.422 9.793 32.423 Atomic orbital electron populations 1.22992 0.78304 1.04169 1.01579 1.87916 1.22289 1.27811 1.95795 1.19290 0.82298 0.85353 1.03137 1.22440 0.93976 1.01963 1.01867 1.22613 0.94131 0.98531 1.01033 1.18915 0.83731 0.95181 0.98105 1.60420 1.08012 1.04959 1.57969 1.21985 0.86957 0.98221 0.98742 1.22118 0.92521 0.97982 0.97401 0.88626 1.21964 0.98452 1.01063 0.92103 1.22087 0.96152 1.00266 0.97205 1.22702 0.99521 0.99857 0.95262 1.22022 0.95688 0.95360 0.83158 0.90740 1.45752 1.12202 1.50713 1.27137 1.20042 0.82452 0.80434 0.84953 1.90690 1.50313 1.40945 1.62333 1.23380 1.02172 1.04189 0.98397 1.85566 1.09033 1.65423 1.32273 1.23184 1.01725 1.33984 1.10762 0.89957 1.26114 0.94203 0.96752 1.01973 1.70178 1.03135 1.40557 1.40841 0.85019 0.77713 0.78513 0.76851 1.18676 1.20362 1.18687 0.88642 0.92334 0.92405 0.88999 0.89030 0.87708 0.91844 0.83368 0.90597 0.95051 0.91391 0.90378 0.91804 0.90405 0.90578 0.93432 0.74827 0.87358 0.87336 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.77 10.66 -148.98 -1.59 -8.36 16 3 C 0.17 2.24 6.41 70.18 0.45 2.69 16 4 C -0.20 -3.78 13.73 31.13 0.43 -3.36 16 5 C -0.16 -3.08 13.60 31.13 0.42 -2.65 16 6 C 0.17 2.58 6.16 84.50 0.52 3.10 16 7 N -0.68 -10.34 6.36 -523.73 -3.33 -13.67 16 8 C 0.07 1.10 5.01 86.30 0.43 1.53 16 9 C -0.08 -1.23 2.65 -9.73 -0.03 -1.26 16 10 H 0.10 1.21 8.02 -2.39 -0.02 1.19 16 11 C -0.10 -1.41 6.26 31.32 0.20 -1.21 16 12 C -0.12 -1.88 6.80 31.32 0.21 -1.67 16 13 C -0.13 -2.82 6.51 31.67 0.21 -2.62 16 14 C 0.14 3.16 2.69 46.27 0.12 3.29 16 15 H 0.07 2.06 7.46 -2.39 -0.02 2.04 16 16 N -0.71 -17.30 5.18 -436.48 -2.26 -19.56 16 17 C 0.54 19.52 7.85 87.66 0.69 20.21 16 18 O -0.56 -26.07 15.51 -3.04 -0.05 -26.11 16 19 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 20 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 21 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 25 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.35 5.00 8.71 -89.69 -0.78 4.22 16 37 H 0.08 1.27 7.95 -2.38 -0.02 1.25 16 38 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 1.03 7.71 -2.39 -0.02 1.01 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.41 7.34 8.57 -92.71 -0.79 6.54 16 46 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 47 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 48 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -79.14 418.88 -0.23 -79.38 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.61 Total: 22.69 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 6.45 Total: -14.67 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -5.30 Total: -89.05 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.64 Total: -34.47 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -79.14 -0.23 -79.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568520195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.121 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds