Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99678 * 2 1 4 4 C 1.47207 * 109.46733 * 179.97438 * 3 2 1 5 5 C 3.40052 * 161.18910 * 0.02562 * 2 1 3 6 6 C 4.78771 * 168.18571 * 359.97438 * 2 1 3 7 7 N 1.46896 * 109.47463 * 337.91215 * 6 5 4 8 8 C 1.46903 * 111.00464 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47591 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47144 * 64.99513 * 9 8 7 11 11 C 1.52998 * 109.47387 * 184.99997 * 9 8 7 12 12 C 1.52998 * 117.49666 * 248.74675 * 11 9 8 13 13 C 1.52998 * 117.49943 * 180.08353 * 11 9 8 14 14 N 1.46501 * 109.47004 * 304.99851 * 9 8 7 15 15 C 1.46506 * 120.00098 * 300.00173 * 14 9 8 16 16 C 1.34771 * 120.00308 * 120.00028 * 14 9 8 17 17 O 1.21283 * 120.00089 * 359.97438 * 16 14 9 18 18 C 1.50702 * 120.00335 * 180.02562 * 16 14 9 19 19 S 1.81004 * 109.47123 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99720 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00414 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99695 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00055 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00321 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47104 * 89.99902 * 24 22 20 26 26 H 1.48500 * 109.47374 * 209.99883 * 24 22 20 27 27 H 1.48496 * 109.46876 * 330.00219 * 24 22 20 28 28 H 1.09005 * 109.47282 * 300.00222 * 1 2 3 29 29 H 1.08997 * 109.47054 * 59.99940 * 1 2 3 30 30 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47425 * 60.00358 * 3 2 1 32 32 H 1.09004 * 109.47458 * 299.99626 * 3 2 1 33 33 H 1.09004 * 109.47019 * 217.91470 * 6 5 4 34 34 H 1.09001 * 109.47295 * 97.91427 * 6 5 4 35 35 H 1.00900 * 111.00225 * 303.95454 * 7 6 5 36 36 H 1.09001 * 109.46896 * 59.99827 * 8 7 6 37 37 H 1.09003 * 109.46633 * 300.00186 * 8 7 6 38 38 H 1.08999 * 115.54688 * 34.41142 * 11 9 8 39 39 H 1.08992 * 117.50055 * 359.97438 * 12 11 9 40 40 H 1.09001 * 117.49787 * 145.01928 * 12 11 9 41 41 H 1.09000 * 117.49634 * 214.97583 * 13 11 9 42 42 H 1.09000 * 117.50325 * 359.97438 * 13 11 9 43 43 H 1.09001 * 109.47060 * 270.00243 * 15 14 9 44 44 H 1.09004 * 109.47073 * 29.99732 * 15 14 9 45 45 H 1.09000 * 109.47212 * 149.99814 * 15 14 9 46 46 H 1.09000 * 109.47188 * 299.99755 * 18 16 14 47 47 H 1.08996 * 109.47042 * 59.99980 * 18 16 14 48 48 H 0.97002 * 120.00222 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6479 1.0965 0.0005 6 6 6.1153 0.9802 -0.0004 7 7 6.5025 -0.3377 0.5200 8 6 7.9636 -0.4897 0.5344 9 6 8.3273 -1.8717 1.0808 10 1 7.9642 -2.6396 0.3977 11 6 9.8475 -1.9840 1.2129 12 6 10.5700 -2.9429 0.2646 13 6 10.4149 -3.3016 1.7447 14 7 7.7080 -2.0554 2.3957 15 6 8.0362 -1.1429 3.4939 16 6 6.8364 -3.0638 2.5951 17 8 6.5643 -3.8189 1.6859 18 6 6.1989 -3.2524 3.9476 19 16 5.0854 -4.6785 3.8961 20 6 4.4966 -4.6670 5.5567 21 1 4.8450 -3.9139 6.2480 22 6 3.5843 -5.6252 5.9762 23 7 3.1440 -5.6164 7.2167 24 14 2.9801 -6.9266 4.7800 25 1 3.8751 -8.1100 4.8423 26 1 1.5986 -7.3311 5.1448 27 1 2.9863 -6.3733 3.4020 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 6.5420 1.7598 0.6308 34 1 6.4881 1.0926 -1.0185 35 1 6.1142 -0.4922 1.4384 36 1 8.4026 0.2796 1.1696 37 1 8.3495 -0.3873 -0.4799 38 1 10.3644 -1.0652 1.4897 39 1 9.9624 -3.4941 -0.4530 40 1 11.5625 -2.6552 -0.0821 41 1 11.3055 -3.2496 2.3711 42 1 9.7053 -4.0883 2.0009 43 1 8.8925 -1.5313 4.0454 44 1 8.2797 -0.1604 3.0896 45 1 7.1806 -1.0582 4.1639 46 1 6.9744 -3.4233 4.6942 47 1 5.6324 -2.3589 4.2100 48 1 2.5067 -6.2863 7.5099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571356399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = 6.934401 kcal Electronic energy + Delta-G solvation = -27009.278339 eV Core-core repulsion = 23193.536555 eV Total energy + Delta-G solvation = -3815.741784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.06192 -38.10820 -37.64091 -36.54007 -34.82057 -33.29780 -32.39432 -30.76530 -28.98004 -27.92251 -26.77235 -26.04366 -25.55748 -24.72750 -22.67116 -22.30055 -20.78973 -19.10297 -17.83087 -17.58801 -16.96604 -16.64547 -16.29713 -16.13831 -15.94563 -15.51601 -15.30675 -14.94523 -14.88672 -14.68020 -13.99417 -13.82203 -13.53821 -13.19690 -13.15925 -13.01859 -12.74907 -12.63949 -12.40751 -12.22770 -12.10115 -11.84780 -11.73742 -11.62538 -11.31009 -11.20397 -10.96733 -10.57828 -10.51214 -10.45638 -10.37746 -10.27422 -9.80543 -9.66174 -9.32593 -8.95789 -8.73541 -8.45770 -8.41994 -6.85405 -6.24911 -3.95460 2.18141 2.53534 2.72986 3.03171 3.17939 3.36940 3.55920 3.60287 3.75505 3.83415 3.91887 4.34140 4.37818 4.57392 4.72742 4.75877 4.88087 4.92007 4.94221 5.02401 5.03141 5.09511 5.12753 5.14430 5.15133 5.17919 5.22041 5.25221 5.34195 5.40664 5.51310 5.52217 5.54778 5.56683 5.67727 5.74327 5.84346 5.87345 6.05192 6.05816 6.16419 6.62169 6.74567 6.91358 7.13319 7.45199 7.51644 7.98153 8.45200 8.53969 9.21824 10.84361 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.005732 B = 0.004304 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4883.603509 B = 6503.980088 C =10469.910416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.178 3.822 4 C -0.176 4.176 5 C -0.151 4.151 6 C 0.175 3.825 7 N -0.681 5.681 8 C 0.056 3.944 9 C 0.173 3.827 10 H 0.111 0.889 11 C -0.167 4.167 12 C -0.171 4.171 13 C -0.166 4.166 14 N -0.615 5.615 15 C 0.077 3.923 16 C 0.534 3.466 17 O -0.510 6.510 18 C -0.120 4.120 19 S -0.141 6.141 20 C -0.520 4.520 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.882 5.882 24 Si 0.855 3.145 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.234 1.234 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.351 0.649 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.953 17.649 -14.243 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.102 3.898 4 C -0.177 4.177 5 C -0.152 4.152 6 C 0.047 3.953 7 N -0.313 5.313 8 C -0.074 4.074 9 C 0.069 3.931 10 H 0.129 0.871 11 C -0.186 4.186 12 C -0.208 4.208 13 C -0.203 4.203 14 N -0.351 5.351 15 C -0.067 4.067 16 C 0.322 3.678 17 O -0.384 6.384 18 C -0.271 4.271 19 S 0.086 5.914 20 C -0.667 4.667 21 H 0.105 0.895 22 C -0.112 4.112 23 N -0.519 5.519 24 Si 0.680 3.320 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.158 1.158 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.171 0.829 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.454 15.964 -16.043 24.160 hybrid contribution 0.012 1.195 1.767 2.133 sum 8.466 17.158 -14.276 23.873 Atomic orbital electron populations 1.22809 0.80162 1.03558 0.99970 1.88060 1.20135 1.26305 1.95425 1.19042 0.83694 0.85859 1.01156 1.21685 0.92826 1.01978 1.01212 1.22076 0.93521 0.98127 1.01495 1.18795 0.84577 0.90555 1.01386 1.60292 1.10005 1.28557 1.32473 1.22269 0.87606 0.96264 1.01240 1.20595 0.89397 0.97899 0.85225 0.87076 1.22552 0.94627 0.95078 1.06369 1.22997 1.01456 1.02875 0.93516 1.22866 1.02732 0.98300 0.96424 1.47833 1.45074 1.30978 1.11213 1.21755 1.01750 0.93195 0.89961 1.20254 0.78044 0.79614 0.89917 1.90698 1.60318 1.43402 1.43954 1.23307 1.02622 1.04617 0.96540 1.84821 1.52975 1.35383 1.18246 1.22321 1.30838 1.19345 0.94221 0.89502 1.24695 0.94608 0.96896 0.95012 1.69942 1.30904 1.35222 1.15811 0.86754 0.78907 0.82697 0.83647 1.19245 1.19986 1.15810 0.93665 0.93942 0.88967 0.90905 0.91030 0.92942 0.88642 0.82882 0.94740 0.89582 0.87821 0.88465 0.88806 0.88902 0.88435 0.92441 0.91739 0.90681 0.88738 0.88730 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.21 10.66 -35.23 -0.38 -5.59 16 3 C 0.18 1.94 6.41 34.37 0.22 2.16 16 4 C -0.18 -2.35 13.73 -37.12 -0.51 -2.86 16 5 C -0.15 -1.97 13.60 -37.12 -0.50 -2.47 16 6 C 0.17 1.76 6.16 -6.61 -0.04 1.72 16 7 N -0.68 -8.24 6.46 -116.89 -0.76 -8.99 16 8 C 0.06 0.53 4.96 -3.83 -0.02 0.51 16 9 C 0.17 2.00 2.53 -67.93 -0.17 1.83 16 10 H 0.11 1.65 6.66 -51.93 -0.35 1.31 16 11 C -0.17 -1.56 4.83 -90.62 -0.44 -2.00 16 12 C -0.17 -1.56 10.18 -26.69 -0.27 -1.84 16 13 C -0.17 -1.75 10.13 -26.69 -0.27 -2.02 16 14 N -0.62 -8.08 1.71 -173.93 -0.30 -8.38 16 15 C 0.08 0.77 9.59 59.85 0.57 1.34 16 16 C 0.53 9.73 7.69 -10.99 -0.08 9.65 16 17 O -0.51 -11.27 15.19 5.55 0.08 -11.19 16 18 C -0.12 -2.39 4.71 36.01 0.17 -2.22 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 20 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 23 N -0.88 -26.90 13.97 55.49 0.78 -26.12 16 24 Si 0.86 22.21 27.74 -169.99 -4.71 17.50 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.23 -6.13 6.74 56.52 0.38 -5.74 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.35 4.78 7.84 -39.29 -0.31 4.47 16 36 H 0.03 0.27 6.88 -51.93 -0.36 -0.09 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 39 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 45 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 46 H 0.09 1.76 8.11 -51.92 -0.42 1.34 16 47 H 0.09 1.77 7.40 -51.92 -0.38 1.39 16 48 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 416.38 15.07 6.27 6.27 Total: -1.00 -36.19 416.38 -9.00 -45.20 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.98 Total: 3.85 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.02 Total: -6.91 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.28 Total: -43.49 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.29 Total: -16.78 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.19 -9.00 -45.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571356399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.130 kcal (2) G-P(sol) polarization free energy of solvation -36.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds