Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99678 * 2 1 4 4 C 1.47207 * 109.46733 * 179.97438 * 3 2 1 5 5 C 3.40052 * 161.18910 * 0.02562 * 2 1 3 6 6 C 4.78771 * 168.18571 * 359.97438 * 2 1 3 7 7 N 1.46896 * 109.47463 * 337.91215 * 6 5 4 8 8 C 1.46903 * 111.00464 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47591 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47144 * 64.99513 * 9 8 7 11 11 C 1.52998 * 109.47387 * 184.99997 * 9 8 7 12 12 C 1.52998 * 117.49666 * 248.74675 * 11 9 8 13 13 C 1.52998 * 117.49943 * 180.08353 * 11 9 8 14 14 N 1.46501 * 109.47004 * 304.99851 * 9 8 7 15 15 C 1.46506 * 120.00098 * 300.00173 * 14 9 8 16 16 C 1.34771 * 120.00308 * 120.00028 * 14 9 8 17 17 O 1.21283 * 120.00089 * 359.97438 * 16 14 9 18 18 C 1.50702 * 120.00335 * 180.02562 * 16 14 9 19 19 S 1.81004 * 109.47123 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99720 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00414 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99695 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00055 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00321 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47104 * 89.99902 * 24 22 20 26 26 H 1.48500 * 109.47374 * 209.99883 * 24 22 20 27 27 H 1.48496 * 109.46876 * 330.00219 * 24 22 20 28 28 H 1.09005 * 109.47282 * 300.00222 * 1 2 3 29 29 H 1.08997 * 109.47054 * 59.99940 * 1 2 3 30 30 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47425 * 60.00358 * 3 2 1 32 32 H 1.09004 * 109.47458 * 299.99626 * 3 2 1 33 33 H 1.09004 * 109.47019 * 217.91470 * 6 5 4 34 34 H 1.09001 * 109.47295 * 97.91427 * 6 5 4 35 35 H 1.00900 * 111.00225 * 303.95454 * 7 6 5 36 36 H 1.09001 * 109.46896 * 59.99827 * 8 7 6 37 37 H 1.09003 * 109.46633 * 300.00186 * 8 7 6 38 38 H 1.08999 * 115.54688 * 34.41142 * 11 9 8 39 39 H 1.08992 * 117.50055 * 359.97438 * 12 11 9 40 40 H 1.09001 * 117.49787 * 145.01928 * 12 11 9 41 41 H 1.09000 * 117.49634 * 214.97583 * 13 11 9 42 42 H 1.09000 * 117.50325 * 359.97438 * 13 11 9 43 43 H 1.09001 * 109.47060 * 270.00243 * 15 14 9 44 44 H 1.09004 * 109.47073 * 29.99732 * 15 14 9 45 45 H 1.09000 * 109.47212 * 149.99814 * 15 14 9 46 46 H 1.09000 * 109.47188 * 299.99755 * 18 16 14 47 47 H 1.08996 * 109.47042 * 59.99980 * 18 16 14 48 48 H 0.97002 * 120.00222 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6479 1.0965 0.0005 6 6 6.1153 0.9802 -0.0004 7 7 6.5025 -0.3377 0.5200 8 6 7.9636 -0.4897 0.5344 9 6 8.3273 -1.8717 1.0808 10 1 7.9642 -2.6396 0.3977 11 6 9.8475 -1.9840 1.2129 12 6 10.5700 -2.9429 0.2646 13 6 10.4149 -3.3016 1.7447 14 7 7.7080 -2.0554 2.3957 15 6 8.0362 -1.1429 3.4939 16 6 6.8364 -3.0638 2.5951 17 8 6.5643 -3.8189 1.6859 18 6 6.1989 -3.2524 3.9476 19 16 5.0854 -4.6785 3.8961 20 6 4.4966 -4.6670 5.5567 21 1 4.8450 -3.9139 6.2480 22 6 3.5843 -5.6252 5.9762 23 7 3.1440 -5.6164 7.2167 24 14 2.9801 -6.9266 4.7800 25 1 3.8751 -8.1100 4.8423 26 1 1.5986 -7.3311 5.1448 27 1 2.9863 -6.3733 3.4020 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 6.5420 1.7598 0.6308 34 1 6.4881 1.0926 -1.0185 35 1 6.1142 -0.4922 1.4384 36 1 8.4026 0.2796 1.1696 37 1 8.3495 -0.3873 -0.4799 38 1 10.3644 -1.0652 1.4897 39 1 9.9624 -3.4941 -0.4530 40 1 11.5625 -2.6552 -0.0821 41 1 11.3055 -3.2496 2.3711 42 1 9.7053 -4.0883 2.0009 43 1 8.8925 -1.5313 4.0454 44 1 8.2797 -0.1604 3.0896 45 1 7.1806 -1.0582 4.1639 46 1 6.9744 -3.4233 4.6942 47 1 5.6324 -2.3589 4.2100 48 1 2.5067 -6.2863 7.5099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571356399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = -17.662079 kcal Electronic energy + Delta-G solvation = -27010.344923 eV Core-core repulsion = 23193.536555 eV Total energy + Delta-G solvation = -3816.808367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.23985 -38.97900 -38.75759 -37.34801 -35.92844 -34.67850 -34.22998 -31.88232 -30.16209 -28.87628 -27.86487 -27.68945 -26.86667 -25.56447 -23.49901 -23.09657 -21.84480 -20.32815 -19.59595 -18.65899 -18.24318 -17.52000 -17.30612 -17.19478 -16.98642 -16.91534 -16.54579 -16.18416 -15.92814 -15.87419 -15.42971 -14.94269 -14.81658 -14.53915 -14.44472 -14.06330 -13.79764 -13.59688 -13.42209 -13.37146 -13.19898 -13.06342 -13.00119 -12.83453 -12.65059 -12.51912 -12.40582 -12.16078 -11.87798 -11.38466 -11.34802 -11.24207 -11.17887 -11.12375 -10.73696 -10.51810 -10.49493 -9.73036 -9.35787 -8.99924 -8.52542 -6.22562 0.97361 1.25996 1.29092 1.45437 1.52828 1.59631 1.60524 2.03876 2.24303 2.68853 2.85820 2.95739 2.98330 3.11564 3.50521 3.64854 3.79415 3.96295 4.09275 4.14327 4.17786 4.20069 4.27437 4.29720 4.34714 4.40254 4.41502 4.44282 4.47599 4.53882 4.59043 4.65743 4.72691 4.78845 4.80856 4.85027 4.88244 4.95402 5.05269 5.27548 5.31917 5.60947 5.70087 5.97091 6.09905 6.13832 6.19516 6.30391 6.52786 6.93196 7.16814 8.59971 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.005732 B = 0.004304 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4883.603509 B = 6503.980088 C =10469.910416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.172 3.828 4 C -0.209 4.209 5 C -0.166 4.166 6 C 0.176 3.824 7 N -0.707 5.707 8 C 0.063 3.937 9 C 0.170 3.830 10 H 0.072 0.928 11 C -0.152 4.152 12 C -0.162 4.162 13 C -0.181 4.181 14 N -0.597 5.597 15 C 0.068 3.932 16 C 0.535 3.465 17 O -0.559 6.559 18 C -0.104 4.104 19 S -0.179 6.179 20 C -0.526 4.526 21 H 0.062 0.938 22 C 0.049 3.951 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.261 1.261 26 H -0.257 1.257 27 H -0.241 1.241 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.339 0.661 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 19.973 -15.282 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C 0.097 3.903 4 C -0.211 4.211 5 C -0.167 4.167 6 C 0.048 3.952 7 N -0.339 5.339 8 C -0.066 4.066 9 C 0.067 3.933 10 H 0.090 0.910 11 C -0.172 4.172 12 C -0.200 4.200 13 C -0.219 4.219 14 N -0.330 5.330 15 C -0.074 4.074 16 C 0.322 3.678 17 O -0.437 6.437 18 C -0.255 4.255 19 S 0.047 5.953 20 C -0.674 4.674 21 H 0.080 0.920 22 C -0.156 4.156 23 N -0.554 5.554 24 Si 0.733 3.267 25 H -0.186 1.186 26 H -0.181 1.181 27 H -0.165 1.165 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.089 0.911 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.316 18.340 -17.076 27.099 hybrid contribution -0.459 0.599 2.086 2.218 sum 9.857 18.939 -14.990 26.087 Atomic orbital electron populations 1.22980 0.78358 1.03902 1.01743 1.87982 1.22358 1.28242 1.95788 1.19335 0.82562 0.85193 1.03199 1.22538 0.94173 1.02550 1.01808 1.22939 0.94791 0.97701 1.01283 1.18999 0.82977 0.90362 1.02812 1.60282 1.11617 1.30185 1.31849 1.22290 0.86392 0.95141 1.02744 1.20721 0.90785 0.98369 0.83435 0.91011 1.22566 0.92888 0.95801 1.05908 1.23051 1.02434 1.02131 0.92348 1.22802 1.02847 0.98183 0.98023 1.47763 1.43006 1.29408 1.12861 1.22061 1.02116 0.94092 0.89155 1.19934 0.78884 0.80553 0.88434 1.90681 1.62465 1.45675 1.44925 1.23268 1.01756 1.01905 0.98553 1.84788 1.55047 1.39387 1.16050 1.22437 1.30862 1.18696 0.95401 0.91961 1.25492 0.94809 0.98792 0.96510 1.70009 1.31748 1.36374 1.17269 0.85921 0.79312 0.80297 0.81193 1.18600 1.18099 1.16550 0.92422 0.91600 0.89431 0.89211 0.88407 0.90140 0.86930 0.84307 0.91534 0.87910 0.84464 0.90051 0.86116 0.87155 0.92234 0.91024 0.88248 0.91122 0.87367 0.87496 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.72 10.66 -148.98 -1.59 -13.31 16 3 C 0.17 3.66 6.41 70.18 0.45 4.11 16 4 C -0.21 -5.56 13.73 31.13 0.43 -5.14 16 5 C -0.17 -4.19 13.60 31.13 0.42 -3.76 16 6 C 0.18 3.12 6.16 84.50 0.52 3.64 16 7 N -0.71 -15.85 6.46 -523.73 -3.39 -19.24 16 8 C 0.06 0.99 4.96 86.30 0.43 1.42 16 9 C 0.17 3.66 2.53 44.99 0.11 3.77 16 10 H 0.07 2.17 6.66 -2.39 -0.02 2.16 16 11 C -0.15 -2.40 4.83 -10.80 -0.05 -2.45 16 12 C -0.16 -2.63 10.18 30.62 0.31 -2.32 16 13 C -0.18 -3.56 10.13 30.62 0.31 -3.25 16 14 N -0.60 -14.90 1.71 -822.58 -1.41 -16.31 16 15 C 0.07 1.14 9.59 127.77 1.23 2.37 16 16 C 0.53 19.69 7.69 87.66 0.67 20.36 16 17 O -0.56 -25.68 15.19 -3.04 -0.05 -25.72 16 18 C -0.10 -4.17 4.71 71.24 0.34 -3.84 16 19 S -0.18 -9.52 18.55 -56.49 -1.05 -10.57 16 20 C -0.53 -31.50 10.04 67.95 0.68 -30.82 16 21 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 22 C 0.05 2.97 5.50 84.86 0.47 3.44 16 23 N -0.92 -56.63 13.97 21.65 0.30 -56.33 16 24 Si 0.91 46.47 27.74 68.60 1.90 48.37 16 25 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.24 -12.53 6.74 99.48 0.67 -11.86 16 28 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.34 8.82 7.84 -89.69 -0.70 8.12 16 36 H 0.07 0.66 6.88 -2.39 -0.02 0.64 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.14 1.34 8.11 -2.39 -0.02 1.32 16 39 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 1.04 6.53 -2.38 -0.02 1.02 16 45 H 0.07 1.30 6.44 -2.39 -0.02 1.28 16 46 H 0.11 4.02 8.11 -2.39 -0.02 4.00 16 47 H 0.11 4.01 7.40 -2.40 -0.02 3.99 16 48 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -83.08 416.38 2.51 -80.57 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.22 Total: 23.27 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 7.57 Total: -10.75 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -4.49 Total: -91.87 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.63 Total: -39.03 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Atomic # 16 Polarization: -9.52 SS G_CDS: -1.05 Total: -10.57 kcal Total: -83.08 2.51 -80.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571356399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.909 kcal (2) G-P(sol) polarization free energy of solvation -83.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds