Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46509 * 119.99639 * 2 1 4 4 C 1.52999 * 109.47169 * 84.30353 * 3 2 1 5 5 H 1.08996 * 113.03874 * 293.48042 * 4 3 2 6 6 C 1.53943 * 113.77196 * 65.24058 * 4 3 2 7 7 C 1.53943 * 86.40581 * 137.95997 * 6 4 3 8 8 N 1.47572 * 86.11842 * 336.33781 * 7 6 4 9 9 C 1.34776 * 134.49298 * 204.64019 * 8 7 6 10 10 O 1.21287 * 120.00256 * 175.06179 * 9 8 7 11 11 C 1.50702 * 119.99891 * 355.05771 * 9 8 7 12 12 C 1.53003 * 109.47149 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47150 * 180.02562 * 12 11 9 14 14 C 1.53004 * 117.49760 * 243.61975 * 13 12 11 15 15 C 1.52999 * 60.00201 * 252.50931 * 14 13 12 16 16 C 1.34773 * 120.00376 * 179.97438 * 2 1 3 17 17 O 1.21275 * 120.00281 * 180.02562 * 16 2 1 18 18 C 1.50703 * 119.99818 * 0.02562 * 16 2 1 19 19 S 1.80996 * 109.47292 * 179.97438 * 18 16 2 20 20 C 1.76195 * 100.00073 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00401 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99704 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00459 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99814 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46950 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47240 * 119.99954 * 24 22 20 27 27 H 1.48508 * 109.47087 * 239.99926 * 24 22 20 28 28 H 1.09003 * 109.46726 * 86.24132 * 1 2 3 29 29 H 1.08998 * 109.47237 * 206.23773 * 1 2 3 30 30 H 1.08998 * 109.47702 * 326.24470 * 1 2 3 31 31 H 1.08996 * 109.47014 * 324.29969 * 3 2 1 32 32 H 1.09005 * 109.46467 * 204.30566 * 3 2 1 33 33 H 1.09003 * 113.73936 * 23.55945 * 6 4 3 34 34 H 1.09000 * 113.73863 * 252.35830 * 6 4 3 35 35 H 1.09000 * 113.76738 * 90.64166 * 7 6 4 36 36 H 1.09000 * 113.76640 * 222.03497 * 7 6 4 37 37 H 1.08996 * 109.47172 * 300.00187 * 11 9 8 38 38 H 1.09000 * 109.47325 * 60.00575 * 11 9 8 39 39 H 1.08996 * 109.47084 * 300.00054 * 12 11 9 40 40 H 1.09004 * 109.47175 * 60.00114 * 12 11 9 41 41 H 1.08995 * 115.55284 * 29.33023 * 13 12 11 42 42 H 1.09000 * 117.50273 * 0.02562 * 14 13 12 43 43 H 1.09006 * 117.49753 * 145.01929 * 14 13 12 44 44 H 1.08996 * 117.50191 * 252.51146 * 15 14 13 45 45 H 1.09004 * 117.51617 * 107.47761 * 15 14 13 46 46 H 1.08996 * 109.47448 * 300.00074 * 18 16 2 47 47 H 1.09006 * 109.46889 * 59.99644 * 18 16 2 48 48 H 0.97000 * 120.00424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.3284 1.7821 1.4354 5 1 1.3723 2.0632 1.8768 6 6 3.1890 0.8819 2.3402 7 6 3.7993 2.1836 2.8907 8 7 3.3889 2.7980 1.6133 9 6 3.8107 3.8587 0.8968 10 8 3.3290 4.0847 -0.1931 11 6 4.8810 4.7641 1.4499 12 6 5.1727 5.8814 0.4461 13 6 6.2597 6.8002 1.0074 14 6 5.8785 8.2548 1.2902 15 6 6.7784 7.9174 0.0997 16 6 2.1389 -1.1671 0.0005 17 8 3.3517 -1.1671 0.0010 18 6 1.3855 -2.4723 0.0005 19 16 2.5616 -3.8480 0.0005 20 6 1.4416 -5.2081 -0.0003 21 1 0.3764 -5.0305 -0.0001 22 6 1.9284 -6.5079 0.0001 23 7 3.2268 -6.7246 0.0004 24 14 0.7410 -7.9500 0.0000 25 1 -0.6544 -7.4421 0.0002 26 1 0.9671 -8.7773 -1.2124 27 1 0.9665 -8.7770 1.2127 28 1 -0.3633 0.0674 -1.0255 29 1 -0.3633 -0.9218 0.4543 30 1 -0.3634 0.8544 0.5710 31 1 1.6564 2.0007 -0.5997 32 1 3.1903 1.1152 -0.4230 33 1 3.8990 0.2610 1.7938 34 1 2.6133 0.3214 3.0767 35 1 3.2743 2.5822 3.7587 36 1 4.8795 2.1380 3.0292 37 1 4.5390 5.1997 2.3886 38 1 5.7891 4.1876 1.6263 39 1 5.5146 5.4462 -0.4928 40 1 4.2645 6.4579 0.2700 41 1 6.9739 6.3267 1.6810 42 1 4.8532 8.5571 1.0768 43 1 6.3418 8.7384 2.1502 44 1 7.8337 8.1790 0.1765 45 1 6.3455 7.9975 -0.8974 46 1 0.7585 -2.5299 0.8902 47 1 0.7591 -2.5302 -0.8897 48 1 3.5670 -7.6329 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573097321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = -16.037051 kcal Electronic energy + Delta-G solvation = -26754.161745 eV Core-core repulsion = 22937.423844 eV Total energy + Delta-G solvation = -3816.737901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71007 -39.31137 -38.26092 -37.44213 -35.25543 -32.62960 -32.44018 -30.69506 -29.63715 -28.11800 -26.45202 -25.51333 -25.11102 -23.49624 -22.72997 -21.72916 -20.68916 -19.27289 -18.90753 -17.67158 -17.19470 -16.74840 -16.29347 -16.24653 -15.86628 -15.43533 -15.38969 -14.81621 -14.67394 -14.35630 -13.92556 -13.56937 -13.46477 -13.16903 -13.11606 -12.86889 -12.74609 -12.54934 -12.37605 -12.14979 -11.97267 -11.93860 -11.70098 -11.66569 -11.56091 -11.51912 -11.08236 -11.02651 -10.86539 -10.75450 -10.67002 -10.23300 -9.84086 -9.79235 -9.36925 -9.08534 -8.99540 -8.45989 -8.23402 -6.51131 -6.23004 -3.93396 2.41498 2.50250 3.01377 3.06032 3.20534 3.26874 3.31051 3.43414 3.62835 4.07740 4.19144 4.32457 4.41564 4.54400 4.58242 4.73235 4.81564 4.85000 4.91592 4.94781 5.04117 5.11424 5.12136 5.13026 5.17485 5.22527 5.28094 5.30099 5.43792 5.46453 5.55030 5.57886 5.65808 5.69406 5.70134 5.74722 5.75923 5.81160 5.89006 6.00440 6.03742 6.12245 6.24223 6.61311 7.50107 7.55539 7.58949 8.00545 8.34203 8.54415 9.22616 10.84414 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027466 B = 0.001869 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.208208 B =14973.907836 C =15284.812605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.621 5.621 3 C 0.120 3.880 4 C 0.120 3.880 5 H 0.091 0.909 6 C -0.149 4.149 7 C 0.101 3.899 8 N -0.640 5.640 9 C 0.533 3.467 10 O -0.541 6.541 11 C -0.131 4.131 12 C -0.074 4.074 13 C -0.154 4.154 14 C -0.182 4.182 15 C -0.180 4.180 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.150 4.150 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 25.992 6.992 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C -0.004 4.004 4 C 0.017 3.983 5 H 0.109 0.891 6 C -0.186 4.186 7 C -0.022 4.022 8 N -0.377 5.377 9 C 0.323 3.677 10 O -0.418 6.418 11 C -0.171 4.171 12 C -0.111 4.111 13 C -0.173 4.173 14 C -0.219 4.219 15 C -0.217 4.217 16 C 0.322 3.678 17 O -0.387 6.387 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.537 26.165 6.275 26.950 hybrid contribution -2.294 -0.833 0.167 2.446 sum -0.757 25.331 6.442 26.148 Atomic orbital electron populations 1.21794 0.79564 1.03157 1.01893 1.47787 1.06841 1.05385 1.75741 1.21384 0.99396 0.84840 0.94764 1.23290 0.92257 0.85357 0.97446 0.89078 1.23687 0.99880 0.96043 0.99031 1.23207 1.01296 0.90967 0.86683 1.50273 1.35881 1.28093 1.23450 1.20466 0.83419 0.79133 0.84668 1.90705 1.58828 1.71757 1.20514 1.21597 0.98197 0.96646 1.00624 1.20925 0.97502 0.94797 0.97909 1.22355 1.01313 0.90328 1.03268 1.23053 1.00683 0.98203 0.99987 1.22965 0.99656 1.03338 0.95778 1.20357 0.87979 0.84498 0.74935 1.90672 1.13676 1.86684 1.47671 1.23562 1.04575 0.97226 1.04732 1.85379 1.08033 0.93315 1.96696 1.22902 0.94356 0.92218 1.58823 0.90899 1.24987 0.95655 0.98377 0.94542 1.70025 1.11724 1.21560 1.46957 0.86127 0.80369 0.81151 0.77905 1.19616 1.20571 1.20576 0.92606 0.90335 0.91611 0.90170 0.88975 0.87098 0.89826 0.89746 0.89786 0.89025 0.88928 0.90663 0.91091 0.87709 0.88787 0.88963 0.88833 0.88685 0.89222 0.89294 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.33 59.85 0.62 1.44 16 2 N -0.62 -8.73 2.79 -181.57 -0.51 -9.24 16 3 C 0.12 1.64 4.86 -4.04 -0.02 1.62 16 4 C 0.12 1.35 4.55 -66.67 -0.30 1.05 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -1.64 7.25 -25.81 -0.19 -1.82 16 7 C 0.10 0.82 8.61 -2.97 -0.03 0.80 16 8 N -0.64 -6.96 3.50 -170.94 -0.60 -7.55 16 9 C 0.53 6.33 7.98 -10.98 -0.09 6.24 16 10 O -0.54 -8.33 16.04 5.55 0.09 -8.24 16 11 C -0.13 -1.07 5.41 -27.88 -0.15 -1.22 16 12 C -0.07 -0.63 4.78 -26.73 -0.13 -0.76 16 13 C -0.15 -1.08 5.74 -90.62 -0.52 -1.60 16 14 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 15 C -0.18 -1.21 10.25 -26.73 -0.27 -1.48 16 16 C 0.53 9.83 7.28 -10.99 -0.08 9.75 16 17 O -0.51 -11.17 13.81 5.56 0.08 -11.09 16 18 C -0.15 -2.98 4.66 36.01 0.17 -2.81 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.80 6.30 -51.93 -0.33 0.47 16 30 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 32 H 0.09 1.53 7.26 -51.93 -0.38 1.16 16 33 H 0.11 1.61 6.59 -51.93 -0.34 1.26 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 41 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.62 7.41 -51.92 -0.38 1.23 16 47 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -35.11 409.10 -10.47 -45.58 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.13 Total: 0.22 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.06 Total: -2.99 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.37 Total: -41.96 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.11 -10.47 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573097321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.541 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds