Wall clock time and date at job start Tue Mar 31 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46509 * 119.99639 * 2 1 4 4 C 1.52999 * 109.47169 * 84.30353 * 3 2 1 5 5 H 1.08996 * 113.03874 * 293.48042 * 4 3 2 6 6 C 1.53943 * 113.77196 * 65.24058 * 4 3 2 7 7 C 1.53943 * 86.40581 * 137.95997 * 6 4 3 8 8 N 1.47572 * 86.11842 * 336.33781 * 7 6 4 9 9 C 1.34776 * 134.49298 * 204.64019 * 8 7 6 10 10 O 1.21287 * 120.00256 * 175.06179 * 9 8 7 11 11 C 1.50702 * 119.99891 * 355.05771 * 9 8 7 12 12 C 1.53003 * 109.47149 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47150 * 180.02562 * 12 11 9 14 14 C 1.53004 * 117.49760 * 243.61975 * 13 12 11 15 15 C 1.52999 * 60.00201 * 252.50931 * 14 13 12 16 16 C 1.34773 * 120.00376 * 179.97438 * 2 1 3 17 17 O 1.21275 * 120.00281 * 180.02562 * 16 2 1 18 18 C 1.50703 * 119.99818 * 0.02562 * 16 2 1 19 19 S 1.80996 * 109.47292 * 179.97438 * 18 16 2 20 20 C 1.76195 * 100.00073 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00401 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99704 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00459 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99814 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46950 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47240 * 119.99954 * 24 22 20 27 27 H 1.48508 * 109.47087 * 239.99926 * 24 22 20 28 28 H 1.09003 * 109.46726 * 86.24132 * 1 2 3 29 29 H 1.08998 * 109.47237 * 206.23773 * 1 2 3 30 30 H 1.08998 * 109.47702 * 326.24470 * 1 2 3 31 31 H 1.08996 * 109.47014 * 324.29969 * 3 2 1 32 32 H 1.09005 * 109.46467 * 204.30566 * 3 2 1 33 33 H 1.09003 * 113.73936 * 23.55945 * 6 4 3 34 34 H 1.09000 * 113.73863 * 252.35830 * 6 4 3 35 35 H 1.09000 * 113.76738 * 90.64166 * 7 6 4 36 36 H 1.09000 * 113.76640 * 222.03497 * 7 6 4 37 37 H 1.08996 * 109.47172 * 300.00187 * 11 9 8 38 38 H 1.09000 * 109.47325 * 60.00575 * 11 9 8 39 39 H 1.08996 * 109.47084 * 300.00054 * 12 11 9 40 40 H 1.09004 * 109.47175 * 60.00114 * 12 11 9 41 41 H 1.08995 * 115.55284 * 29.33023 * 13 12 11 42 42 H 1.09000 * 117.50273 * 0.02562 * 14 13 12 43 43 H 1.09006 * 117.49753 * 145.01929 * 14 13 12 44 44 H 1.08996 * 117.50191 * 252.51146 * 15 14 13 45 45 H 1.09004 * 117.51617 * 107.47761 * 15 14 13 46 46 H 1.08996 * 109.47448 * 300.00074 * 18 16 2 47 47 H 1.09006 * 109.46889 * 59.99644 * 18 16 2 48 48 H 0.97000 * 120.00424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.3284 1.7821 1.4354 5 1 1.3723 2.0632 1.8768 6 6 3.1890 0.8819 2.3402 7 6 3.7993 2.1836 2.8907 8 7 3.3889 2.7980 1.6133 9 6 3.8107 3.8587 0.8968 10 8 3.3290 4.0847 -0.1931 11 6 4.8810 4.7641 1.4499 12 6 5.1727 5.8814 0.4461 13 6 6.2597 6.8002 1.0074 14 6 5.8785 8.2548 1.2902 15 6 6.7784 7.9174 0.0997 16 6 2.1389 -1.1671 0.0005 17 8 3.3517 -1.1671 0.0010 18 6 1.3855 -2.4723 0.0005 19 16 2.5616 -3.8480 0.0005 20 6 1.4416 -5.2081 -0.0003 21 1 0.3764 -5.0305 -0.0001 22 6 1.9284 -6.5079 0.0001 23 7 3.2268 -6.7246 0.0004 24 14 0.7410 -7.9500 0.0000 25 1 -0.6544 -7.4421 0.0002 26 1 0.9671 -8.7773 -1.2124 27 1 0.9665 -8.7770 1.2127 28 1 -0.3633 0.0674 -1.0255 29 1 -0.3633 -0.9218 0.4543 30 1 -0.3634 0.8544 0.5710 31 1 1.6564 2.0007 -0.5997 32 1 3.1903 1.1152 -0.4230 33 1 3.8990 0.2610 1.7938 34 1 2.6133 0.3214 3.0767 35 1 3.2743 2.5822 3.7587 36 1 4.8795 2.1380 3.0292 37 1 4.5390 5.1997 2.3886 38 1 5.7891 4.1876 1.6263 39 1 5.5146 5.4462 -0.4928 40 1 4.2645 6.4579 0.2700 41 1 6.9739 6.3267 1.6810 42 1 4.8532 8.5571 1.0768 43 1 6.3418 8.7384 2.1502 44 1 7.8337 8.1790 0.1765 45 1 6.3455 7.9975 -0.8974 46 1 0.7585 -2.5299 0.8902 47 1 0.7591 -2.5302 -0.8897 48 1 3.5670 -7.6329 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573097321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:06 Heat of formation + Delta-G solvation = -37.374205 kcal Electronic energy + Delta-G solvation = -26755.086993 eV Core-core repulsion = 22937.423844 eV Total energy + Delta-G solvation = -3817.663149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67280 -40.56367 -39.07860 -38.17662 -36.53887 -34.57438 -33.37774 -31.93811 -30.57707 -29.32313 -27.68829 -27.39840 -25.87742 -24.47129 -23.22950 -22.57098 -21.28558 -20.70372 -19.78136 -19.52072 -18.19828 -17.94733 -17.33217 -17.26690 -16.87390 -16.72882 -16.44625 -16.34082 -15.81347 -15.59766 -14.97268 -14.69797 -14.49442 -14.36407 -14.23978 -14.11908 -13.78856 -13.64826 -13.36232 -13.17725 -13.10926 -12.94084 -12.91590 -12.83845 -12.56489 -12.47300 -12.43496 -12.26905 -12.15285 -11.77742 -11.67623 -11.22563 -11.14949 -10.92701 -10.81140 -10.66585 -10.24400 -9.95921 -9.54631 -8.65306 -8.33865 -6.11464 1.24059 1.41916 1.43391 1.53968 1.57005 1.61660 1.72710 2.23038 2.28989 2.90443 3.00518 3.26305 3.34199 3.52654 3.68998 3.78337 3.88306 3.96463 4.03751 4.05942 4.06736 4.21623 4.25083 4.30472 4.33527 4.40591 4.48722 4.51563 4.55391 4.56421 4.62644 4.69264 4.77937 4.80194 4.91815 4.93958 4.97182 5.03640 5.05658 5.13343 5.27441 5.31854 5.42046 5.43305 5.48653 6.20815 6.25483 6.70445 7.07802 7.10785 7.15042 8.75460 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027466 B = 0.001869 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.208208 B =14973.907836 C =15284.812605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.126 3.874 4 C 0.119 3.881 5 H 0.121 0.879 6 C -0.153 4.153 7 C 0.115 3.885 8 N -0.644 5.644 9 C 0.523 3.477 10 O -0.587 6.587 11 C -0.121 4.121 12 C -0.070 4.070 13 C -0.157 4.157 14 C -0.176 4.176 15 C -0.189 4.189 16 C 0.534 3.466 17 O -0.557 6.557 18 C -0.123 4.123 19 S -0.149 6.149 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 27.164 9.018 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C 0.002 3.998 4 C 0.015 3.985 5 H 0.138 0.862 6 C -0.191 4.191 7 C -0.006 4.006 8 N -0.380 5.380 9 C 0.315 3.685 10 O -0.468 6.468 11 C -0.161 4.161 12 C -0.108 4.108 13 C -0.175 4.175 14 C -0.213 4.213 15 C -0.226 4.226 16 C 0.321 3.679 17 O -0.434 6.434 18 C -0.274 4.274 19 S 0.078 5.922 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.131 0.869 47 H 0.121 0.879 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.568 27.368 8.329 28.613 hybrid contribution -1.685 -1.090 -0.504 2.069 sum -2.253 26.277 7.825 27.510 Atomic orbital electron populations 1.22127 0.76653 1.05008 1.03372 1.47723 1.08488 1.04121 1.73803 1.21313 0.97334 0.84363 0.96750 1.23362 0.93782 0.85761 0.95568 0.86192 1.23555 0.99548 0.96911 0.99133 1.23388 1.02535 0.88308 0.86363 1.50411 1.35695 1.27522 1.24404 1.21155 0.83704 0.79459 0.84170 1.90678 1.60513 1.73079 1.22505 1.21607 0.97498 0.95841 1.01106 1.20831 0.97479 0.95114 0.97335 1.22331 1.01108 0.90374 1.03659 1.23113 1.00583 0.97501 1.00118 1.23038 1.00377 1.03484 0.95661 1.20142 0.87363 0.85234 0.75134 1.90667 1.15477 1.87271 1.50020 1.23377 1.02754 0.94886 1.06425 1.85568 1.12466 0.97109 1.97010 1.23235 0.94686 0.92675 1.58673 0.89900 1.26106 0.97538 1.01653 0.93780 1.70187 1.14079 1.22386 1.48131 0.84922 0.78269 0.76832 0.78027 1.17962 1.20153 1.19858 0.91530 0.89730 0.88356 0.89724 0.92875 0.91223 0.88752 0.86124 0.88489 0.86405 0.87482 0.92974 0.92373 0.86369 0.89042 0.87542 0.87815 0.89486 0.86906 0.87900 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 10.33 127.77 1.32 2.57 16 2 N -0.61 -16.56 2.79 -846.74 -2.36 -18.92 16 3 C 0.13 3.44 4.86 86.38 0.42 3.86 16 4 C 0.12 2.51 4.55 45.03 0.20 2.71 16 5 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.15 -3.24 7.25 31.25 0.23 -3.02 16 7 C 0.12 1.57 8.61 86.49 0.75 2.32 16 8 N -0.64 -13.12 3.50 -813.13 -2.85 -15.96 16 9 C 0.52 12.15 7.98 87.66 0.70 12.85 16 10 O -0.59 -18.57 16.04 -3.05 -0.05 -18.62 16 11 C -0.12 -1.80 5.41 29.85 0.16 -1.64 16 12 C -0.07 -1.18 4.78 30.59 0.15 -1.04 16 13 C -0.16 -1.98 5.74 -10.79 -0.06 -2.04 16 14 C -0.18 -1.97 10.18 30.60 0.31 -1.66 16 15 C -0.19 -2.38 10.25 30.60 0.31 -2.06 16 16 C 0.53 19.86 7.28 87.66 0.64 20.50 16 17 O -0.56 -25.51 13.81 -3.01 -0.04 -25.55 16 18 C -0.12 -4.85 4.66 71.24 0.33 -4.52 16 19 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 20 C -0.54 -30.76 9.50 67.95 0.65 -30.12 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 24 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.45 6.30 -2.39 -0.02 1.44 16 30 H 0.10 1.17 8.10 -2.39 -0.02 1.16 16 31 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 32 H 0.05 1.88 7.26 -2.38 -0.02 1.86 16 33 H 0.07 2.11 6.59 -2.39 -0.02 2.10 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.06 1.12 7.83 -2.39 -0.02 1.10 16 41 H 0.12 1.19 8.07 -2.39 -0.02 1.17 16 42 H 0.09 1.07 8.03 -2.39 -0.02 1.05 16 43 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.11 3.89 7.41 -2.40 -0.02 3.88 16 47 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 48 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -81.38 409.10 3.35 -78.03 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.93 Total: 20.51 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.57 Total: -0.03 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -4.92 Total: -90.21 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.09 Total: -44.17 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -81.38 3.35 -78.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573097321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.657 kcal (2) G-P(sol) polarization free energy of solvation -81.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds