Wall clock time and date at job start Tue Mar 31 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 120.00140 * 2 1 4 4 C 1.52997 * 109.47687 * 266.89424 * 3 2 1 5 5 H 1.09009 * 112.73689 * 43.47201 * 4 3 2 6 6 C 1.53496 * 113.47023 * 272.65547 * 4 3 2 7 7 C 1.53495 * 83.34240 * 219.14828 * 6 4 3 8 8 N 1.47060 * 113.47013 * 174.21618 * 4 3 2 9 9 C 1.34779 * 136.05779 * 321.86396 * 8 4 3 10 10 O 1.21284 * 120.00239 * 355.11487 * 9 8 4 11 11 C 1.50697 * 120.00118 * 175.10892 * 9 8 4 12 12 C 1.52995 * 109.47472 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47369 * 180.02562 * 12 11 9 14 14 C 1.53000 * 117.49813 * 243.74770 * 13 12 11 15 15 C 1.53006 * 117.50023 * 175.08815 * 13 12 11 16 16 C 1.34774 * 120.00322 * 180.02562 * 2 1 3 17 17 O 1.21281 * 120.00656 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99736 * 359.97438 * 16 2 1 19 19 S 1.81000 * 109.47134 * 179.97438 * 18 16 2 20 20 C 1.76206 * 99.99850 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00272 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99635 * 179.72720 * 20 19 18 23 23 N 1.31630 * 119.99584 * 180.27826 * 22 20 19 24 24 Si 1.86794 * 120.00149 * 0.27480 * 22 20 19 25 25 H 1.48499 * 109.46916 * 90.00438 * 24 22 20 26 26 H 1.48503 * 109.47228 * 210.00053 * 24 22 20 27 27 H 1.48500 * 109.47296 * 330.00379 * 24 22 20 28 28 H 1.09003 * 109.47305 * 274.37120 * 1 2 3 29 29 H 1.08999 * 109.47018 * 34.36897 * 1 2 3 30 30 H 1.08998 * 109.47404 * 154.36956 * 1 2 3 31 31 H 1.09006 * 109.46930 * 26.90130 * 3 2 1 32 32 H 1.09007 * 109.47266 * 146.89341 * 3 2 1 33 33 H 1.09002 * 114.20473 * 332.73765 * 6 4 3 34 34 H 1.08999 * 114.20755 * 105.56040 * 6 4 3 35 35 H 1.09000 * 113.46819 * 271.28469 * 7 6 4 36 36 H 1.09009 * 113.46850 * 140.84784 * 7 6 4 37 37 H 1.09007 * 109.47538 * 300.00476 * 11 9 8 38 38 H 1.09007 * 109.47325 * 60.00223 * 11 9 8 39 39 H 1.09003 * 109.47264 * 300.00359 * 12 11 9 40 40 H 1.09000 * 109.47473 * 60.00083 * 12 11 9 41 41 H 1.08996 * 115.54905 * 29.41845 * 13 12 11 42 42 H 1.09005 * 117.50232 * 359.97438 * 14 13 12 43 43 H 1.08998 * 117.50216 * 145.02395 * 14 13 12 44 44 H 1.09002 * 117.50091 * 214.98072 * 15 13 12 45 45 H 1.09007 * 117.49304 * 359.97438 * 15 13 12 46 46 H 1.09001 * 109.46937 * 60.00217 * 18 16 2 47 47 H 1.08993 * 109.47205 * 300.00189 * 18 16 2 48 48 H 0.96997 * 120.00050 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5202 1.6714 -1.4403 5 1 1.6784 1.5254 -2.1173 6 6 3.8357 1.0763 -1.9613 7 6 3.9919 2.4550 -2.6176 8 7 3.1379 3.0013 -1.5522 9 6 2.9870 4.1956 -0.9459 10 8 2.1031 4.3545 -0.1308 11 6 3.9168 5.3333 -1.2806 12 6 3.5317 6.5653 -0.4592 13 6 4.4752 7.7206 -0.7994 14 6 5.3743 8.2513 0.3190 15 6 4.1830 9.0818 -0.1648 16 6 2.1389 -1.1671 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0020 20 6 1.4414 -5.2082 -0.0010 21 1 0.3761 -5.0305 -0.0002 22 6 1.9282 -6.5080 -0.0075 23 7 1.0914 -7.5241 -0.0122 24 14 3.7707 -6.8154 -0.0095 25 1 4.2593 -6.9037 1.3900 26 1 4.0592 -8.0894 -0.7159 27 1 4.4583 -5.6974 -0.7043 28 1 -0.3634 0.0783 1.0247 29 1 -0.3633 0.8483 -0.5801 30 1 -0.3634 -0.9265 -0.4445 31 1 1.5854 2.0416 0.4650 32 1 3.1247 1.1530 0.5613 33 1 4.5699 0.8656 -1.1837 34 1 3.7064 0.2568 -2.6683 35 1 3.5428 2.5174 -3.6088 36 1 5.0135 2.8345 -2.5925 37 1 4.9418 5.0462 -1.0455 38 1 3.8391 5.5657 -2.3428 39 1 2.5067 6.8525 -0.6938 40 1 3.6097 6.3328 0.6029 41 1 4.8812 7.7136 -1.8110 42 1 5.2933 7.7776 1.2974 43 1 6.3716 8.5939 0.0433 44 1 4.3970 9.9704 -0.7587 45 1 3.3182 9.1543 0.4948 46 1 0.7584 -2.5298 -0.8903 47 1 0.7591 -2.5302 0.8896 48 1 1.4315 -8.4325 -0.0171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573097322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:09 Heat of formation + Delta-G solvation = -32.252165 kcal Electronic energy + Delta-G solvation = -26751.527221 eV Core-core repulsion = 22934.086180 eV Total energy + Delta-G solvation = -3817.441041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78174 -40.61634 -39.19772 -38.19724 -36.57589 -34.65977 -33.38209 -31.98652 -30.68133 -29.32769 -27.85115 -27.39401 -25.93311 -24.36688 -23.23346 -22.72534 -21.27937 -20.76302 -19.86006 -19.54921 -18.21619 -17.97325 -17.45535 -17.21414 -17.08125 -16.66813 -16.56639 -16.09816 -15.85766 -15.55765 -15.04203 -14.88497 -14.62463 -14.42283 -14.27604 -14.16248 -13.79610 -13.65878 -13.45881 -13.34954 -13.21803 -13.06299 -13.01360 -12.82593 -12.59161 -12.46828 -12.45640 -12.26611 -12.14664 -11.85347 -11.62751 -11.21874 -11.16039 -10.95744 -10.81700 -10.68413 -10.51062 -9.94975 -9.61901 -8.97859 -8.50261 -6.20852 0.98026 1.32854 1.44012 1.50693 1.53202 1.59075 1.72608 2.18438 2.26243 2.69766 2.88121 2.90630 3.30809 3.51041 3.58860 3.78705 3.84516 3.94137 4.01624 4.04713 4.07855 4.15082 4.25003 4.28087 4.30476 4.42490 4.45437 4.51186 4.54320 4.57867 4.60474 4.65561 4.75914 4.80569 4.86916 4.91771 5.00476 5.04268 5.06217 5.12714 5.26169 5.27415 5.43118 5.44650 5.71759 6.12630 6.20498 6.72307 6.94818 7.05949 7.10829 8.62116 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.001919 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.169048 B =14585.489772 C =15005.146095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.121 3.879 4 C 0.113 3.887 5 H 0.103 0.897 6 C -0.142 4.142 7 C 0.111 3.889 8 N -0.645 5.645 9 C 0.532 3.468 10 O -0.585 6.585 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.153 4.153 14 C -0.185 4.185 15 C -0.185 4.185 16 C 0.534 3.466 17 O -0.546 6.546 18 C -0.108 4.108 19 S -0.168 6.168 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.265 1.265 26 H -0.260 1.260 27 H -0.233 1.233 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 31.279 -7.166 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.002 4.002 4 C 0.008 3.992 5 H 0.120 0.880 6 C -0.180 4.180 7 C -0.011 4.011 8 N -0.381 5.381 9 C 0.324 3.676 10 O -0.466 6.466 11 C -0.159 4.159 12 C -0.108 4.108 13 C -0.171 4.171 14 C -0.221 4.221 15 C -0.222 4.222 16 C 0.322 3.678 17 O -0.423 6.423 18 C -0.259 4.259 19 S 0.058 5.942 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.184 1.184 27 H -0.157 1.157 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.106 0.894 46 H 0.132 0.868 47 H 0.124 0.876 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.222 31.414 -6.633 32.908 hybrid contribution -1.425 -0.864 0.417 1.718 sum 5.796 30.549 -6.215 31.710 Atomic orbital electron populations 1.22091 0.77093 1.04640 1.03314 1.47725 1.08292 1.04436 1.73765 1.21508 0.97495 0.84484 0.96741 1.23165 0.98325 0.80893 0.96814 0.87975 1.23366 0.96205 0.97423 1.00988 1.23175 0.96703 0.89688 0.91495 1.49953 1.40767 1.08627 1.38748 1.21046 0.84644 0.82106 0.79811 1.90679 1.36542 1.82468 1.36890 1.21601 0.99345 0.91490 1.03505 1.20841 0.98509 0.92274 0.99192 1.22344 1.01730 0.94239 0.98806 1.23127 0.96025 1.04323 0.98668 1.23050 0.99991 0.94965 1.04205 1.19992 0.87451 0.84902 0.75492 1.90665 1.14692 1.87185 1.49730 1.23294 1.01894 0.93711 1.06958 1.84624 1.13442 0.98552 1.97548 1.22475 0.94422 0.92620 1.58248 0.92099 1.25567 1.02780 0.94746 0.92879 1.70019 1.36818 0.99529 1.49158 0.85864 0.80174 0.80195 0.80118 1.18941 1.18389 1.15699 0.91423 0.89208 0.89733 0.89594 0.91698 0.89921 0.89370 0.87169 0.87810 0.87201 0.86456 0.92183 0.92955 0.86033 0.89463 0.87714 0.87645 0.89419 0.86809 0.87598 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.30 127.77 1.32 2.67 16 2 N -0.61 -15.88 2.88 -846.76 -2.44 -18.32 16 3 C 0.12 3.07 5.25 86.38 0.45 3.52 16 4 C 0.11 2.31 4.26 41.79 0.18 2.49 16 5 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 6 C -0.14 -2.71 7.08 30.93 0.22 -2.49 16 7 C 0.11 1.29 8.42 83.17 0.70 1.99 16 8 N -0.65 -11.68 3.57 -833.79 -2.97 -14.65 16 9 C 0.53 10.89 7.95 87.66 0.70 11.59 16 10 O -0.59 -16.80 15.54 -3.04 -0.05 -16.85 16 11 C -0.12 -1.47 5.49 29.85 0.16 -1.31 16 12 C -0.07 -1.02 4.78 30.59 0.15 -0.88 16 13 C -0.15 -1.63 5.73 -10.79 -0.06 -1.70 16 14 C -0.18 -2.00 10.18 30.62 0.31 -1.69 16 15 C -0.19 -2.00 10.26 30.62 0.31 -1.69 16 16 C 0.53 18.22 7.68 87.66 0.67 18.89 16 17 O -0.55 -21.87 14.36 -3.03 -0.04 -21.91 16 18 C -0.11 -4.02 4.65 71.24 0.33 -3.69 16 19 S -0.17 -8.32 18.54 -56.49 -1.05 -9.37 16 20 C -0.53 -30.53 10.04 67.95 0.68 -29.84 16 21 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 22 C 0.05 2.65 5.50 84.86 0.47 3.12 16 23 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 24 Si 0.91 44.39 27.74 68.60 1.90 46.29 16 25 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.23 -11.17 6.73 99.48 0.67 -10.50 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.08 1.57 6.28 -2.39 -0.02 1.55 16 31 H 0.09 2.26 6.99 -2.38 -0.02 2.24 16 32 H 0.06 1.93 7.24 -2.38 -0.02 1.91 16 33 H 0.08 1.97 7.74 -2.39 -0.02 1.95 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.05 0.96 7.83 -2.39 -0.02 0.94 16 41 H 0.12 0.90 8.08 -2.39 -0.02 0.88 16 42 H 0.09 1.07 8.03 -2.38 -0.02 1.05 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.11 3.87 7.41 -2.40 -0.02 3.85 16 47 H 0.11 3.76 8.11 -2.40 -0.02 3.74 16 48 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -75.85 406.78 3.14 -72.71 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.89 Total: 16.30 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 6.59 Total: 0.98 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -5.11 Total: -88.16 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.09 Total: -38.76 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.05 Total: -9.37 kcal Total: -75.85 3.14 -72.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573097322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.455 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds