Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50691 * 120.00203 * 2 1 4 4 C 1.53004 * 109.47514 * 124.99659 * 3 2 1 5 5 C 1.50703 * 109.47213 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99775 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99884 * 180.02562 * 5 4 3 8 8 C 1.47029 * 125.64910 * 0.04697 * 7 5 4 9 9 C 1.54323 * 107.27212 * 178.90076 * 8 7 5 10 10 C 1.55151 * 102.94256 * 337.80687 * 9 8 7 11 11 H 1.08995 * 111.03937 * 277.41170 * 10 9 8 12 12 C 1.52996 * 111.00612 * 153.57398 * 10 9 8 13 13 N 1.46502 * 109.47041 * 72.80380 * 12 10 9 14 14 C 1.46499 * 120.00062 * 90.00341 * 13 12 10 15 15 C 1.34779 * 119.99726 * 270.00095 * 13 12 10 16 16 O 1.21279 * 120.00410 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.99541 * 179.97438 * 15 13 12 18 18 S 1.81004 * 109.46790 * 180.02562 * 17 15 13 19 19 C 1.76197 * 99.99958 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00243 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99782 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47113 * 120.00051 * 23 21 19 26 26 H 1.48508 * 109.47046 * 240.00237 * 23 21 19 27 27 C 1.47425 * 125.64889 * 180.02562 * 7 5 4 28 28 H 1.08003 * 119.99969 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00138 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99614 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47095 * 4.99966 * 3 2 1 32 32 H 1.08998 * 109.47244 * 245.00062 * 3 2 1 33 33 H 1.09004 * 109.46689 * 60.00059 * 4 3 2 34 34 H 1.08998 * 109.47195 * 300.00434 * 4 3 2 35 35 H 1.09002 * 109.88250 * 298.32034 * 8 7 5 36 36 H 1.09001 * 109.88331 * 59.48615 * 8 7 5 37 37 H 1.08991 * 110.72167 * 219.44332 * 9 8 7 38 38 H 1.09002 * 110.71685 * 96.16505 * 9 8 7 39 39 H 1.09002 * 109.47038 * 312.80289 * 12 10 9 40 40 H 1.09006 * 109.47661 * 192.80509 * 12 10 9 41 41 H 1.09002 * 109.47391 * 89.99876 * 14 13 12 42 42 H 1.09001 * 109.46813 * 329.99933 * 14 13 12 43 43 H 1.09004 * 109.47041 * 210.00060 * 14 13 12 44 44 H 1.08996 * 109.47057 * 299.99739 * 17 15 13 45 45 H 1.08996 * 109.47084 * 60.00703 * 17 15 13 46 46 H 0.96994 * 120.00208 * 180.02562 * 22 21 19 47 47 H 1.08997 * 110.36637 * 85.32745 * 27 7 5 48 48 H 1.09003 * 110.45896 * 323.04945 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7891 2.6379 1.1812 6 8 3.5705 3.4642 0.3209 7 7 4.7062 2.8866 2.1370 8 6 5.0691 1.9770 3.2336 9 6 6.1753 2.6702 4.0568 10 6 6.7721 3.6879 3.0492 11 1 7.5019 3.2096 2.3959 12 6 7.3923 4.8817 3.7778 13 7 8.6433 4.4672 4.4177 14 6 9.9087 4.5690 3.6866 15 6 8.6299 3.9922 5.6789 16 8 7.5824 3.9084 6.2843 17 6 9.9167 3.5653 6.3369 18 16 9.5710 2.9783 8.0138 19 6 11.2013 2.5573 8.5328 20 1 12.0351 2.6973 7.8606 21 6 11.4144 2.0468 9.8058 22 7 10.3983 1.8767 10.6252 23 14 13.1429 1.6011 10.3563 24 1 14.1009 1.8854 9.2578 25 1 13.5056 2.4071 11.5497 26 1 13.1964 0.1572 10.6991 27 6 5.5119 4.1154 2.2557 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 3.7400 0.5065 1.0921 34 1 2.4773 1.2356 2.1130 35 1 4.1996 1.7907 3.8640 36 1 5.4433 1.0372 2.8274 37 1 6.9308 1.9502 4.3709 38 1 5.7496 3.1849 4.9182 39 1 6.6988 5.2444 4.5366 40 1 7.5967 5.6781 3.0621 41 1 10.3541 5.5476 3.8658 42 1 9.7231 4.4441 2.6198 43 1 10.5905 3.7911 4.0304 44 1 10.3718 2.7618 5.7577 45 1 10.6004 4.4130 6.3821 46 1 10.5472 1.5203 11.5149 47 1 4.9599 4.8795 2.8030 48 1 5.7919 4.4843 1.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581782983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = -57.025471 kcal Electronic energy + Delta-G solvation = -26683.776617 eV Core-core repulsion = 22865.261324 eV Total energy + Delta-G solvation = -3818.515292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.46962 -39.52512 -37.76387 -35.67765 -35.37524 -32.70315 -32.46480 -30.98404 -29.94597 -29.05157 -27.20481 -25.81267 -25.43633 -24.20212 -22.96467 -20.71428 -20.14378 -19.50755 -19.12746 -17.72972 -17.31224 -16.98478 -16.44645 -15.90679 -15.75666 -15.50467 -15.19386 -14.88132 -14.83559 -14.04579 -13.86992 -13.69693 -13.55701 -13.33584 -13.14702 -13.05816 -12.74080 -12.62916 -12.56238 -12.46642 -12.33819 -12.08082 -11.78735 -11.49727 -11.39046 -11.36475 -11.10282 -11.05448 -11.01383 -10.82114 -10.75396 -10.12177 -9.82989 -9.68364 -9.38955 -9.10890 -8.89402 -8.57685 -8.26615 -6.53933 -6.25589 -3.96068 1.89636 2.40167 2.70311 2.92278 3.01069 3.18593 3.23569 3.28276 3.56308 4.11257 4.16780 4.42222 4.46854 4.55445 4.64603 4.75393 4.86150 4.91366 4.95615 5.03412 5.04809 5.09850 5.12408 5.19624 5.22298 5.32742 5.38372 5.44635 5.47493 5.53903 5.58754 5.62336 5.65871 5.67500 5.78944 5.84880 5.87721 5.95742 6.05255 6.09544 6.25601 6.26902 6.40535 6.58430 7.26962 7.47251 7.56420 7.91972 8.31657 8.50755 9.20179 10.81841 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.001947 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.466229 B =14374.026813 C =15405.950283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C -0.079 4.079 4 C -0.132 4.132 5 C 0.527 3.473 6 O -0.546 6.546 7 N -0.619 5.619 8 C 0.098 3.902 9 C -0.121 4.121 10 C -0.117 4.117 11 H 0.084 0.916 12 C 0.129 3.871 13 N -0.624 5.624 14 C 0.080 3.920 15 C 0.534 3.466 16 O -0.512 6.512 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.114 3.886 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.071 0.929 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.857 0.197 -20.820 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.117 4.117 4 C -0.172 4.172 5 C 0.317 3.683 6 O -0.424 6.424 7 N -0.353 5.353 8 C -0.025 4.025 9 C -0.159 4.159 10 C -0.138 4.138 11 H 0.102 0.898 12 C 0.005 3.995 13 N -0.360 5.360 14 C -0.063 4.063 15 C 0.321 3.679 16 O -0.386 6.386 17 C -0.302 4.302 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.009 4.009 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.644 0.440 -20.255 23.882 hybrid contribution 2.517 -0.343 -0.293 2.557 sum -10.128 0.096 -20.548 22.909 Atomic orbital electron populations 1.23895 0.95980 1.01939 1.01083 1.22968 0.96110 0.98327 0.99954 1.20509 0.97774 0.95483 0.97910 1.21610 0.98916 0.95372 1.01272 1.20407 0.78900 0.89065 0.79944 1.90699 1.65791 1.48659 1.37214 1.48554 1.39434 1.19177 1.28118 1.22174 0.98795 0.93289 0.88192 1.22738 0.96970 0.98476 0.97710 1.22816 0.96196 0.97546 0.97223 0.89758 1.21278 0.86488 0.94803 0.96933 1.47840 1.07522 1.66235 1.14390 1.21772 0.85745 1.02227 0.96597 1.20321 0.91041 0.76181 0.80312 1.90674 1.32791 1.52451 1.62641 1.23564 0.97536 1.04016 1.05051 1.85360 1.12804 1.81867 1.03385 1.22901 0.93268 1.49653 1.02512 0.90923 1.24988 0.98139 0.94944 0.95487 1.70021 1.30319 1.42403 1.07507 0.86129 0.82555 0.78236 0.78650 1.19620 1.20556 1.20561 1.22165 0.90804 0.87338 1.00616 0.88519 0.88447 0.87270 0.90734 0.90246 0.88767 0.88715 0.91077 0.91397 0.89920 0.88800 0.89330 0.90481 0.92664 0.91447 0.90660 0.89360 0.89359 0.92227 0.91117 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 14.32 29.01 0.42 -0.84 16 2 C -0.16 -1.06 9.52 -36.03 -0.34 -1.40 16 3 C -0.08 -0.64 4.95 -27.89 -0.14 -0.78 16 4 C -0.13 -1.03 4.87 -27.88 -0.14 -1.17 16 5 C 0.53 5.87 7.85 -10.99 -0.09 5.78 16 6 O -0.55 -7.93 16.24 5.56 0.09 -7.84 16 7 N -0.62 -6.37 3.33 -170.50 -0.57 -6.93 16 8 C 0.10 0.90 6.49 -3.06 -0.02 0.88 16 9 C -0.12 -1.34 5.10 -24.90 -0.13 -1.47 16 10 C -0.12 -1.14 3.26 -88.46 -0.29 -1.42 16 11 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 12 C 0.13 1.33 5.00 -4.04 -0.02 1.31 16 13 N -0.62 -7.76 2.86 -181.57 -0.52 -8.27 16 14 C 0.08 0.74 10.24 59.85 0.61 1.35 16 15 C 0.53 9.16 7.30 -10.98 -0.08 9.08 16 16 O -0.51 -10.35 13.54 5.56 0.08 -10.27 16 17 C -0.15 -2.89 4.71 36.01 0.17 -2.72 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.62 13.22 55.49 0.73 -24.88 16 23 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.11 1.12 6.38 -2.51 -0.02 1.10 16 28 H 0.10 0.61 7.84 -52.48 -0.41 0.20 16 29 H 0.10 0.52 8.06 -52.48 -0.42 0.10 16 30 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 32 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.24 6.93 -51.93 -0.36 0.88 16 39 H 0.09 1.06 7.25 -51.93 -0.38 0.69 16 40 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 43 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 44 H 0.09 1.56 7.40 -51.92 -0.38 1.18 16 45 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 48 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -34.46 406.87 -9.28 -43.74 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.13 Total: -0.94 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 0.14 Total: -2.89 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.35 Total: -40.09 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.46 -9.28 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581782983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.281 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds