Wall clock time and date at job start Tue Mar 31 2020 22:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50691 * 120.00203 * 2 1 4 4 C 1.53004 * 109.47514 * 124.99659 * 3 2 1 5 5 C 1.50703 * 109.47213 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99775 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99884 * 180.02562 * 5 4 3 8 8 C 1.47029 * 125.64910 * 0.04697 * 7 5 4 9 9 C 1.54323 * 107.27212 * 178.90076 * 8 7 5 10 10 C 1.55151 * 102.94256 * 337.80687 * 9 8 7 11 11 H 1.08995 * 111.03937 * 277.41170 * 10 9 8 12 12 C 1.52996 * 111.00612 * 153.57398 * 10 9 8 13 13 N 1.46502 * 109.47041 * 72.80380 * 12 10 9 14 14 C 1.46499 * 120.00062 * 90.00341 * 13 12 10 15 15 C 1.34779 * 119.99726 * 270.00095 * 13 12 10 16 16 O 1.21279 * 120.00410 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.99541 * 179.97438 * 15 13 12 18 18 S 1.81004 * 109.46790 * 180.02562 * 17 15 13 19 19 C 1.76197 * 99.99958 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00243 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99782 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47113 * 120.00051 * 23 21 19 26 26 H 1.48508 * 109.47046 * 240.00237 * 23 21 19 27 27 C 1.47425 * 125.64889 * 180.02562 * 7 5 4 28 28 H 1.08003 * 119.99969 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00138 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99614 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47095 * 4.99966 * 3 2 1 32 32 H 1.08998 * 109.47244 * 245.00062 * 3 2 1 33 33 H 1.09004 * 109.46689 * 60.00059 * 4 3 2 34 34 H 1.08998 * 109.47195 * 300.00434 * 4 3 2 35 35 H 1.09002 * 109.88250 * 298.32034 * 8 7 5 36 36 H 1.09001 * 109.88331 * 59.48615 * 8 7 5 37 37 H 1.08991 * 110.72167 * 219.44332 * 9 8 7 38 38 H 1.09002 * 110.71685 * 96.16505 * 9 8 7 39 39 H 1.09002 * 109.47038 * 312.80289 * 12 10 9 40 40 H 1.09006 * 109.47661 * 192.80509 * 12 10 9 41 41 H 1.09002 * 109.47391 * 89.99876 * 14 13 12 42 42 H 1.09001 * 109.46813 * 329.99933 * 14 13 12 43 43 H 1.09004 * 109.47041 * 210.00060 * 14 13 12 44 44 H 1.08996 * 109.47057 * 299.99739 * 17 15 13 45 45 H 1.08996 * 109.47084 * 60.00703 * 17 15 13 46 46 H 0.96994 * 120.00208 * 180.02562 * 22 21 19 47 47 H 1.08997 * 110.36637 * 85.32745 * 27 7 5 48 48 H 1.09003 * 110.45896 * 323.04945 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7891 2.6379 1.1812 6 8 3.5705 3.4642 0.3209 7 7 4.7062 2.8866 2.1370 8 6 5.0691 1.9770 3.2336 9 6 6.1753 2.6702 4.0568 10 6 6.7721 3.6879 3.0492 11 1 7.5019 3.2096 2.3959 12 6 7.3923 4.8817 3.7778 13 7 8.6433 4.4672 4.4177 14 6 9.9087 4.5690 3.6866 15 6 8.6299 3.9922 5.6789 16 8 7.5824 3.9084 6.2843 17 6 9.9167 3.5653 6.3369 18 16 9.5710 2.9783 8.0138 19 6 11.2013 2.5573 8.5328 20 1 12.0351 2.6973 7.8606 21 6 11.4144 2.0468 9.8058 22 7 10.3983 1.8767 10.6252 23 14 13.1429 1.6011 10.3563 24 1 14.1009 1.8854 9.2578 25 1 13.5056 2.4071 11.5497 26 1 13.1964 0.1572 10.6991 27 6 5.5119 4.1154 2.2557 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 3.7400 0.5065 1.0921 34 1 2.4773 1.2356 2.1130 35 1 4.1996 1.7907 3.8640 36 1 5.4433 1.0372 2.8274 37 1 6.9308 1.9502 4.3709 38 1 5.7496 3.1849 4.9182 39 1 6.6988 5.2444 4.5366 40 1 7.5967 5.6781 3.0621 41 1 10.3541 5.5476 3.8658 42 1 9.7231 4.4441 2.6198 43 1 10.5905 3.7911 4.0304 44 1 10.3718 2.7618 5.7577 45 1 10.6004 4.4130 6.3821 46 1 10.5472 1.5203 11.5149 47 1 4.9599 4.8795 2.8030 48 1 5.7919 4.4843 1.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581782983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:57 Heat of formation + Delta-G solvation = -77.755797 kcal Electronic energy + Delta-G solvation = -26684.675551 eV Core-core repulsion = 22865.261324 eV Total energy + Delta-G solvation = -3819.414227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38324 -40.66452 -38.70401 -36.52573 -36.27630 -34.57131 -33.62376 -31.68985 -30.99491 -30.15990 -28.07378 -27.67049 -26.58111 -25.04431 -23.74045 -21.64786 -20.68244 -20.60820 -20.08902 -19.52030 -18.20819 -18.07466 -17.38858 -17.01684 -16.86682 -16.71775 -16.52411 -16.03801 -15.81431 -15.49483 -14.75816 -14.67033 -14.55153 -14.42613 -14.27002 -14.06628 -13.89123 -13.54743 -13.47558 -13.32432 -13.15683 -13.10959 -13.04279 -12.91452 -12.83059 -12.58542 -12.29287 -12.04745 -11.92582 -11.87366 -11.71374 -11.59260 -11.14753 -11.00992 -10.75839 -10.23155 -10.22857 -9.74978 -9.60867 -8.63614 -8.33823 -6.10562 1.28497 1.37604 1.41494 1.47937 1.55689 1.58598 1.65088 1.95761 2.19750 2.29445 3.00538 3.27182 3.35722 3.59380 3.68245 3.81371 3.86914 3.96088 4.13393 4.24123 4.25678 4.26884 4.32563 4.37635 4.41241 4.44180 4.50872 4.52946 4.59782 4.65290 4.72359 4.78371 4.87354 4.90261 4.97869 5.00928 5.05724 5.08366 5.15821 5.23013 5.36325 5.43368 5.62010 5.75476 5.89744 6.20977 6.32971 6.44978 7.07578 7.08148 7.22751 8.75365 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.001947 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.466229 B =14374.026813 C =15405.950283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.125 4.125 5 C 0.523 3.477 6 O -0.586 6.586 7 N -0.620 5.620 8 C 0.103 3.897 9 C -0.120 4.120 10 C -0.104 4.104 11 H 0.097 0.903 12 C 0.127 3.873 13 N -0.610 5.610 14 C 0.071 3.929 15 C 0.532 3.468 16 O -0.552 6.552 17 C -0.126 4.126 18 S -0.146 6.146 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.114 3.886 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.271 0.729 47 H 0.068 0.932 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 -0.331 -22.712 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.177 4.177 3 C -0.114 4.114 4 C -0.165 4.165 5 C 0.314 3.686 6 O -0.467 6.467 7 N -0.353 5.353 8 C -0.019 4.019 9 C -0.158 4.158 10 C -0.124 4.124 11 H 0.115 0.885 12 C 0.004 3.996 13 N -0.344 5.344 14 C -0.071 4.071 15 C 0.319 3.681 16 O -0.429 6.429 17 C -0.277 4.277 18 S 0.081 5.919 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.181 1.181 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.009 4.009 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.123 -0.078 -22.185 24.817 hybrid contribution 2.008 -0.102 0.186 2.019 sum -9.115 -0.179 -21.999 23.813 Atomic orbital electron populations 1.24052 0.96091 1.02485 1.00530 1.22996 0.96204 0.98130 1.00401 1.20444 0.97536 0.95796 0.97635 1.21639 0.99016 0.94127 1.01686 1.20979 0.78699 0.89695 0.79271 1.90678 1.67036 1.50154 1.38794 1.48645 1.39174 1.19412 1.28051 1.22178 0.98503 0.93426 0.87772 1.22600 0.97248 0.98499 0.97500 1.22700 0.96270 0.96775 0.96628 0.88499 1.21439 0.85257 0.95959 0.96903 1.47798 1.09616 1.64174 1.12799 1.22075 0.84031 1.02976 0.98007 1.20014 0.89576 0.76679 0.81792 1.90671 1.33624 1.54498 1.64112 1.23393 0.99159 1.04740 1.00422 1.85503 1.14042 1.82812 1.09568 1.23237 0.93529 1.49516 1.03060 0.90090 1.26082 1.02796 0.94641 0.95518 1.70179 1.32984 1.43526 1.08012 0.84949 0.76900 0.77973 0.78410 1.18053 1.20070 1.19951 1.22154 0.90745 0.87354 1.00623 0.88861 0.87122 0.85781 0.92286 0.91257 0.86627 0.87433 0.90278 0.89449 0.91492 0.91482 0.91342 0.87010 0.91263 0.88230 0.90892 0.87664 0.88019 0.92044 0.91401 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 14.32 67.78 0.97 -1.32 16 2 C -0.16 -1.94 9.52 25.64 0.24 -1.69 16 3 C -0.08 -1.18 4.95 29.85 0.15 -1.03 16 4 C -0.13 -1.76 4.87 29.85 0.15 -1.62 16 5 C 0.52 11.13 7.85 87.66 0.69 11.82 16 6 O -0.59 -16.94 16.24 -3.02 -0.05 -16.99 16 7 N -0.62 -11.97 3.33 -811.73 -2.70 -14.67 16 8 C 0.10 1.75 6.49 86.73 0.56 2.31 16 9 C -0.12 -2.64 5.10 31.78 0.16 -2.48 16 10 C -0.10 -1.83 3.26 -9.40 -0.03 -1.86 16 11 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 12 C 0.13 2.41 5.00 86.38 0.43 2.84 16 13 N -0.61 -13.99 2.86 -846.74 -2.42 -16.41 16 14 C 0.07 1.07 10.24 127.77 1.31 2.38 16 15 C 0.53 18.11 7.30 87.66 0.64 18.74 16 16 O -0.55 -23.01 13.54 -3.02 -0.04 -23.05 16 17 C -0.13 -4.76 4.71 71.24 0.34 -4.43 16 18 S -0.15 -7.85 20.57 -56.49 -1.16 -9.02 16 19 C -0.55 -30.45 9.50 67.95 0.65 -29.80 16 20 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -54.94 13.22 21.65 0.29 -54.66 16 23 Si 1.00 42.79 29.55 68.60 2.03 44.81 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 C 0.11 2.10 6.38 86.86 0.55 2.66 16 28 H 0.09 1.13 7.84 -2.91 -0.02 1.11 16 29 H 0.11 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 31 H 0.06 1.08 7.75 -2.38 -0.02 1.06 16 32 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.85 6.93 -2.39 -0.02 1.84 16 39 H 0.07 1.63 7.25 -2.39 -0.02 1.61 16 40 H 0.11 1.40 8.07 -2.38 -0.02 1.38 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.92 8.07 -2.39 -0.02 0.90 16 43 H 0.07 1.17 6.44 -2.38 -0.02 1.15 16 44 H 0.11 3.60 7.40 -2.40 -0.02 3.58 16 45 H 0.10 3.55 8.11 -2.40 -0.02 3.53 16 46 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 47 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 48 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -77.93 406.87 4.13 -73.80 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.92 Total: 18.39 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 7.27 Total: -2.21 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -4.84 Total: -85.74 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.09 Total: -40.04 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.02 kcal Total: -77.93 4.13 -73.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581782983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.957 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds