Wall clock time and date at job start Tue Mar 31 2020 22:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 120.00238 * 2 1 4 4 C 1.52992 * 109.46935 * 125.00030 * 3 2 1 5 5 C 1.50701 * 109.46935 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00228 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99985 * 180.02562 * 5 4 3 8 8 C 1.47021 * 125.65062 * 359.97419 * 7 5 4 9 9 C 1.54320 * 107.27212 * 181.10445 * 8 7 5 10 10 C 1.55163 * 102.94403 * 22.19595 * 9 8 7 11 11 H 1.08994 * 111.00572 * 82.60705 * 10 9 8 12 12 C 1.52998 * 111.00361 * 206.42322 * 10 9 8 13 13 N 1.46496 * 109.47337 * 293.54171 * 12 10 9 14 14 C 1.46506 * 119.99759 * 89.99861 * 13 12 10 15 15 C 1.34771 * 120.00157 * 270.00189 * 13 12 10 16 16 O 1.21283 * 120.00062 * 0.02562 * 15 13 12 17 17 C 1.50700 * 120.00216 * 179.97438 * 15 13 12 18 18 S 1.80999 * 109.47142 * 180.02562 * 17 15 13 19 19 C 1.76200 * 99.99765 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00446 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99973 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00053 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99904 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46832 * 90.00177 * 23 21 19 25 25 H 1.48500 * 109.47163 * 209.99709 * 23 21 19 26 26 H 1.48495 * 109.47078 * 330.00014 * 23 21 19 27 27 C 1.47428 * 125.64686 * 180.02562 * 7 5 4 28 28 H 1.08007 * 119.99737 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00258 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99736 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46976 * 4.99694 * 3 2 1 32 32 H 1.09001 * 109.46850 * 244.99839 * 3 2 1 33 33 H 1.09000 * 109.47563 * 60.00023 * 4 3 2 34 34 H 1.09001 * 109.47195 * 299.99597 * 4 3 2 35 35 H 1.08998 * 109.88383 * 61.68621 * 8 7 5 36 36 H 1.09005 * 110.00804 * 300.59384 * 8 7 5 37 37 H 1.08997 * 110.72481 * 263.82741 * 9 8 7 38 38 H 1.09001 * 110.72035 * 140.55153 * 9 8 7 39 39 H 1.09001 * 109.47328 * 173.53993 * 12 10 9 40 40 H 1.08999 * 109.46987 * 53.54480 * 12 10 9 41 41 H 1.09001 * 109.47060 * 90.00688 * 14 13 12 42 42 H 1.09004 * 109.47073 * 210.00177 * 14 13 12 43 43 H 1.09000 * 109.47212 * 330.00260 * 14 13 12 44 44 H 1.09000 * 109.47357 * 300.00116 * 17 15 13 45 45 H 1.08998 * 109.46869 * 60.00030 * 17 15 13 46 46 H 0.97006 * 120.00368 * 180.02562 * 22 21 19 47 47 H 1.09007 * 110.36741 * 36.99261 * 27 7 5 48 48 H 1.08997 * 110.37197 * 274.66312 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6383 1.1819 6 8 3.5698 3.4647 0.3215 7 7 4.7052 2.8870 2.1378 8 6 5.0678 1.9776 3.2347 9 6 6.1337 2.6940 4.0904 10 6 5.9005 4.1908 3.7546 11 1 5.0867 4.6029 4.3511 12 6 7.1832 5.0023 3.9472 13 7 7.5386 5.0241 5.3682 14 6 8.4062 3.9816 5.9223 15 6 7.0674 6.0030 6.1658 16 8 6.3488 6.8656 5.7072 17 6 7.4325 6.0250 7.6277 18 16 6.6505 7.4502 8.4235 19 6 7.2287 7.2345 10.0739 20 1 7.8707 6.4007 10.3165 21 6 6.8599 8.1369 11.0619 22 7 7.2923 7.9761 12.2947 23 14 5.7513 9.5805 10.6418 24 1 4.3317 9.1833 10.8225 25 1 6.0638 10.7221 11.5387 26 1 5.9768 9.9835 9.2305 27 6 5.5102 4.1163 2.2573 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2356 2.1130 35 1 5.4782 1.0528 2.8293 36 1 4.1902 1.7584 3.8429 37 1 7.1365 2.3844 3.7960 38 1 5.9668 2.5063 5.1510 39 1 7.0240 6.0221 3.5968 40 1 7.9918 4.5445 3.3774 41 1 9.4470 4.2959 5.8446 42 1 8.1535 3.8175 6.9699 43 1 8.2635 3.0559 5.3648 44 1 7.0847 5.1078 8.1030 45 1 8.5151 6.0996 7.7307 46 1 7.0343 8.6066 12.9854 47 1 4.9173 4.9868 1.9762 48 1 6.4027 4.0474 1.6355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581782984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:01 Heat of formation + Delta-G solvation = -56.294138 kcal Electronic energy + Delta-G solvation = -26578.492179 eV Core-core repulsion = 22760.008600 eV Total energy + Delta-G solvation = -3818.483579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57570 -39.61927 -37.96664 -35.75189 -35.46830 -32.74195 -32.46158 -31.05077 -30.23581 -29.21480 -27.28915 -25.92711 -25.58670 -24.22853 -23.11363 -20.99059 -20.20656 -19.68006 -19.12119 -17.70511 -17.43216 -16.89868 -16.63604 -16.26784 -15.78942 -15.55247 -15.43916 -14.99251 -14.72937 -14.24148 -14.01028 -13.86028 -13.70838 -13.37585 -13.17250 -13.02581 -12.92108 -12.81562 -12.68269 -12.55963 -12.33329 -12.28866 -12.11172 -11.58307 -11.48264 -11.42981 -11.28113 -11.21293 -11.02725 -10.93959 -10.61622 -10.19323 -9.87880 -9.74109 -9.52949 -9.02588 -9.00155 -8.67992 -8.51692 -6.94732 -6.31284 -4.03244 1.84040 2.32509 2.58097 2.71402 2.89372 3.16089 3.31541 3.49097 3.56491 4.00928 4.17368 4.30960 4.37829 4.43231 4.49029 4.59247 4.68474 4.79616 4.83093 4.88499 4.93276 4.96890 5.01229 5.07903 5.10202 5.17134 5.23046 5.27181 5.40484 5.41886 5.43615 5.47736 5.54579 5.57935 5.61098 5.73265 5.74163 5.78525 5.89871 5.96724 5.99100 6.21206 6.35130 6.49417 7.16469 7.36397 7.84386 7.91598 8.38156 8.38908 9.15011 10.77825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.001930 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.050670 B =14505.559337 C =15111.793181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.131 4.131 5 C 0.527 3.473 6 O -0.540 6.540 7 N -0.620 5.620 8 C 0.100 3.900 9 C -0.127 4.127 10 C -0.118 4.118 11 H 0.093 0.907 12 C 0.130 3.870 13 N -0.621 5.621 14 C 0.075 3.925 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.113 3.887 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.082 0.918 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -19.548 -21.915 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.118 4.118 4 C -0.170 4.170 5 C 0.316 3.684 6 O -0.417 6.417 7 N -0.355 5.355 8 C -0.023 4.023 9 C -0.164 4.164 10 C -0.138 4.138 11 H 0.111 0.889 12 C 0.006 3.994 13 N -0.357 5.357 14 C -0.068 4.068 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.010 4.010 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.343 -17.779 -22.921 29.331 hybrid contribution 0.506 -0.626 0.889 1.199 sum -3.836 -18.405 -22.032 28.964 Atomic orbital electron populations 1.23913 0.95998 1.02007 1.00839 1.22950 0.96100 0.98243 1.00186 1.20517 0.97820 0.95570 0.97874 1.21603 0.98892 0.95218 1.01333 1.20430 0.78687 0.89155 0.80127 1.90724 1.65570 1.48464 1.36982 1.48533 1.39677 1.19116 1.28167 1.22080 0.98669 0.93198 0.88350 1.22771 0.98574 0.94656 1.00442 1.22831 0.99827 0.95540 0.95610 0.88892 1.21240 0.94819 1.01616 0.81690 1.47779 1.51115 1.27811 1.08962 1.21892 0.94095 0.90574 1.00226 1.20340 0.79344 0.80456 0.88003 1.90704 1.35766 1.36923 1.75573 1.23310 1.05086 1.04977 0.93769 1.84819 1.66873 1.31856 1.08180 1.22302 1.36572 1.16636 0.91393 0.89408 1.24707 0.95186 0.97359 0.94004 1.69934 1.43744 1.37013 1.00943 0.86743 0.81572 0.82420 0.81170 1.19214 1.19924 1.15922 1.22179 0.95183 0.87908 0.95706 0.88453 0.88432 0.87319 0.90645 0.90202 0.88833 0.88767 0.91229 0.91162 0.90300 0.89581 0.89292 0.90373 0.92529 0.90513 0.91089 0.88578 0.88519 0.91929 0.89990 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 14.32 29.01 0.42 -0.73 16 2 C -0.16 -0.96 9.52 -36.03 -0.34 -1.30 16 3 C -0.08 -0.60 4.95 -27.89 -0.14 -0.74 16 4 C -0.13 -0.89 4.87 -27.89 -0.14 -1.02 16 5 C 0.53 5.47 7.85 -10.98 -0.09 5.39 16 6 O -0.54 -7.76 16.24 5.55 0.09 -7.67 16 7 N -0.62 -5.62 3.33 -170.51 -0.57 -6.19 16 8 C 0.10 0.62 6.49 -3.07 -0.02 0.60 16 9 C -0.13 -0.81 4.94 -24.90 -0.12 -0.93 16 10 C -0.12 -1.08 3.29 -88.47 -0.29 -1.37 16 11 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 12 C 0.13 1.27 4.93 -4.04 -0.02 1.25 16 13 N -0.62 -7.32 2.79 -181.57 -0.51 -7.83 16 14 C 0.08 0.62 9.94 59.85 0.59 1.22 16 15 C 0.53 9.02 7.69 -10.99 -0.08 8.94 16 16 O -0.52 -10.73 15.44 5.55 0.09 -10.64 16 17 C -0.12 -2.26 4.71 36.01 0.17 -2.09 16 18 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 20 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.25 13.97 55.49 0.78 -25.48 16 23 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 27 C 0.11 1.07 6.38 -2.52 -0.02 1.05 16 28 H 0.10 0.59 7.84 -52.48 -0.41 0.18 16 29 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 30 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 32 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.39 7.19 -51.93 -0.37 0.02 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.05 7.42 -51.93 -0.39 0.67 16 40 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.67 6.44 -51.93 -0.33 0.33 16 43 H 0.07 0.39 6.05 -51.93 -0.31 0.08 16 44 H 0.10 1.65 7.40 -51.92 -0.38 1.27 16 45 H 0.10 1.69 8.11 -51.92 -0.42 1.27 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 48 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -35.86 404.27 -8.68 -44.54 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.08 Total: -2.64 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.14 Total: -1.54 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.30 Total: -39.49 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.18 Total: -18.31 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.86 -8.68 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581782984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.751 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds