Wall clock time and date at job start Tue Mar 31 2020 22:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 120.00238 * 2 1 4 4 C 1.52992 * 109.46935 * 125.00030 * 3 2 1 5 5 C 1.50701 * 109.46935 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00228 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99985 * 180.02562 * 5 4 3 8 8 C 1.47021 * 125.65062 * 359.97419 * 7 5 4 9 9 C 1.54320 * 107.27212 * 181.10445 * 8 7 5 10 10 C 1.55163 * 102.94403 * 22.19595 * 9 8 7 11 11 H 1.08994 * 111.00572 * 82.60705 * 10 9 8 12 12 C 1.52998 * 111.00361 * 206.42322 * 10 9 8 13 13 N 1.46496 * 109.47337 * 293.54171 * 12 10 9 14 14 C 1.46506 * 119.99759 * 89.99861 * 13 12 10 15 15 C 1.34771 * 120.00157 * 270.00189 * 13 12 10 16 16 O 1.21283 * 120.00062 * 0.02562 * 15 13 12 17 17 C 1.50700 * 120.00216 * 179.97438 * 15 13 12 18 18 S 1.80999 * 109.47142 * 180.02562 * 17 15 13 19 19 C 1.76200 * 99.99765 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00446 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99973 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00053 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99904 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46832 * 90.00177 * 23 21 19 25 25 H 1.48500 * 109.47163 * 209.99709 * 23 21 19 26 26 H 1.48495 * 109.47078 * 330.00014 * 23 21 19 27 27 C 1.47428 * 125.64686 * 180.02562 * 7 5 4 28 28 H 1.08007 * 119.99737 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00258 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99736 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46976 * 4.99694 * 3 2 1 32 32 H 1.09001 * 109.46850 * 244.99839 * 3 2 1 33 33 H 1.09000 * 109.47563 * 60.00023 * 4 3 2 34 34 H 1.09001 * 109.47195 * 299.99597 * 4 3 2 35 35 H 1.08998 * 109.88383 * 61.68621 * 8 7 5 36 36 H 1.09005 * 110.00804 * 300.59384 * 8 7 5 37 37 H 1.08997 * 110.72481 * 263.82741 * 9 8 7 38 38 H 1.09001 * 110.72035 * 140.55153 * 9 8 7 39 39 H 1.09001 * 109.47328 * 173.53993 * 12 10 9 40 40 H 1.08999 * 109.46987 * 53.54480 * 12 10 9 41 41 H 1.09001 * 109.47060 * 90.00688 * 14 13 12 42 42 H 1.09004 * 109.47073 * 210.00177 * 14 13 12 43 43 H 1.09000 * 109.47212 * 330.00260 * 14 13 12 44 44 H 1.09000 * 109.47357 * 300.00116 * 17 15 13 45 45 H 1.08998 * 109.46869 * 60.00030 * 17 15 13 46 46 H 0.97006 * 120.00368 * 180.02562 * 22 21 19 47 47 H 1.09007 * 110.36741 * 36.99261 * 27 7 5 48 48 H 1.08997 * 110.37197 * 274.66312 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6383 1.1819 6 8 3.5698 3.4647 0.3215 7 7 4.7052 2.8870 2.1378 8 6 5.0678 1.9776 3.2347 9 6 6.1337 2.6940 4.0904 10 6 5.9005 4.1908 3.7546 11 1 5.0867 4.6029 4.3511 12 6 7.1832 5.0023 3.9472 13 7 7.5386 5.0241 5.3682 14 6 8.4062 3.9816 5.9223 15 6 7.0674 6.0030 6.1658 16 8 6.3488 6.8656 5.7072 17 6 7.4325 6.0250 7.6277 18 16 6.6505 7.4502 8.4235 19 6 7.2287 7.2345 10.0739 20 1 7.8707 6.4007 10.3165 21 6 6.8599 8.1369 11.0619 22 7 7.2923 7.9761 12.2947 23 14 5.7513 9.5805 10.6418 24 1 4.3317 9.1833 10.8225 25 1 6.0638 10.7221 11.5387 26 1 5.9768 9.9835 9.2305 27 6 5.5102 4.1163 2.2573 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2356 2.1130 35 1 5.4782 1.0528 2.8293 36 1 4.1902 1.7584 3.8429 37 1 7.1365 2.3844 3.7960 38 1 5.9668 2.5063 5.1510 39 1 7.0240 6.0221 3.5968 40 1 7.9918 4.5445 3.3774 41 1 9.4470 4.2959 5.8446 42 1 8.1535 3.8175 6.9699 43 1 8.2635 3.0559 5.3648 44 1 7.0847 5.1078 8.1030 45 1 8.5151 6.0996 7.7307 46 1 7.0343 8.6066 12.9854 47 1 4.9173 4.9868 1.9762 48 1 6.4027 4.0474 1.6355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581782984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:00 Heat of formation + Delta-G solvation = -79.303442 kcal Electronic energy + Delta-G solvation = -26579.489937 eV Core-core repulsion = 22760.008600 eV Total energy + Delta-G solvation = -3819.481337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38681 -40.72908 -38.81111 -36.58154 -36.28119 -34.67299 -33.58822 -31.71541 -31.05312 -30.25345 -28.08612 -27.85383 -26.68807 -24.99213 -23.70461 -21.77735 -20.71702 -20.66269 -20.12824 -19.48873 -18.18389 -17.93598 -17.66924 -17.18794 -17.05222 -16.71122 -16.52797 -16.12933 -15.71271 -15.42269 -15.04172 -14.89587 -14.64885 -14.53523 -14.27211 -14.02118 -13.74232 -13.63826 -13.58289 -13.37668 -13.34504 -13.17655 -13.04646 -12.99813 -12.92903 -12.59435 -12.30484 -12.05175 -11.92585 -11.87708 -11.84888 -11.60405 -11.17622 -11.00106 -10.91035 -10.51192 -10.23585 -9.75507 -9.64551 -9.00226 -8.51902 -6.22375 0.98662 1.30018 1.36987 1.45901 1.52772 1.54891 1.57653 1.95402 2.14762 2.24357 2.69583 2.86495 3.37032 3.55833 3.61386 3.76150 3.82663 3.94843 4.13491 4.18575 4.26326 4.27265 4.30367 4.33408 4.37628 4.44180 4.47326 4.52914 4.60073 4.67855 4.75561 4.79808 4.88645 4.89090 4.94155 5.02112 5.06138 5.09719 5.17541 5.22533 5.31666 5.58405 5.70655 5.74412 5.89873 6.11188 6.25996 6.47244 6.93809 7.08973 7.12313 8.60223 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.001930 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.050670 B =14505.559337 C =15111.793181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.120 4.120 5 C 0.517 3.483 6 O -0.593 6.593 7 N -0.621 5.621 8 C 0.096 3.904 9 C -0.119 4.119 10 C -0.111 4.111 11 H 0.055 0.945 12 C 0.129 3.871 13 N -0.604 5.604 14 C 0.065 3.935 15 C 0.530 3.470 16 O -0.565 6.565 17 C -0.104 4.104 18 S -0.184 6.184 19 C -0.526 4.526 20 H 0.065 0.935 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.239 1.239 27 C 0.113 3.887 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.277 0.723 47 H 0.049 0.951 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 -22.565 -22.801 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.173 4.173 3 C -0.118 4.118 4 C -0.160 4.160 5 C 0.308 3.692 6 O -0.474 6.474 7 N -0.355 5.355 8 C -0.026 4.026 9 C -0.156 4.156 10 C -0.131 4.131 11 H 0.074 0.926 12 C 0.006 3.994 13 N -0.337 5.337 14 C -0.076 4.076 15 C 0.317 3.683 16 O -0.443 6.443 17 C -0.255 4.255 18 S 0.042 5.958 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.734 3.266 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.163 1.163 27 C -0.010 4.010 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.288 -20.862 -23.789 31.811 hybrid contribution 0.271 0.184 1.085 1.133 sum -3.016 -20.678 -22.704 30.857 Atomic orbital electron populations 1.24055 0.96252 1.02385 1.00763 1.22994 0.96065 0.98102 1.00183 1.20465 0.97630 0.95772 0.97901 1.21613 0.98952 0.93945 1.01440 1.21142 0.78631 0.89872 0.79557 1.90698 1.67199 1.50326 1.39183 1.48669 1.39051 1.19309 1.28443 1.22325 0.99114 0.93580 0.87531 1.22817 1.00239 0.91739 1.00830 1.22613 0.98157 0.97616 0.94754 0.92615 1.21412 0.96565 1.00857 0.80519 1.47750 1.49902 1.26779 1.09245 1.22245 0.93957 0.90853 1.00593 1.20066 0.79388 0.81273 0.87579 1.90693 1.38293 1.39246 1.76111 1.23282 1.05196 1.02258 0.94778 1.84800 1.68052 1.36214 1.06702 1.22438 1.35858 1.15751 0.93307 0.91721 1.25510 0.96505 0.99773 0.93992 1.70005 1.45111 1.38313 1.01867 0.85911 0.79912 0.79951 0.80868 1.18808 1.18351 1.16322 1.22117 0.95388 0.87374 0.96150 0.89299 0.86966 0.85239 0.92919 0.91316 0.85775 0.87382 0.88079 0.90595 0.87445 0.89191 0.91976 0.86199 0.91086 0.90822 0.87266 0.86841 0.87077 0.91390 0.93231 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 14.32 67.78 0.97 -1.19 16 2 C -0.16 -1.64 9.52 25.64 0.24 -1.39 16 3 C -0.08 -1.16 4.95 29.85 0.15 -1.01 16 4 C -0.12 -1.40 4.87 29.85 0.15 -1.25 16 5 C 0.52 10.45 7.85 87.66 0.69 11.14 16 6 O -0.59 -17.77 16.24 -3.05 -0.05 -17.82 16 7 N -0.62 -10.29 3.33 -811.76 -2.70 -12.99 16 8 C 0.10 0.83 6.49 86.73 0.56 1.39 16 9 C -0.12 -1.03 4.94 31.78 0.16 -0.87 16 10 C -0.11 -1.87 3.29 -9.40 -0.03 -1.90 16 11 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 12 C 0.13 2.27 4.93 86.38 0.43 2.69 16 13 N -0.60 -12.78 2.79 -846.75 -2.36 -15.15 16 14 C 0.06 0.80 9.94 127.77 1.27 2.07 16 15 C 0.53 17.61 7.69 87.66 0.67 18.28 16 16 O -0.56 -23.97 15.44 -3.04 -0.05 -24.02 16 17 C -0.10 -3.81 4.71 71.24 0.34 -3.47 16 18 S -0.18 -9.26 18.55 -56.49 -1.05 -10.31 16 19 C -0.53 -30.24 10.04 67.96 0.68 -29.55 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.78 5.50 84.86 0.47 3.25 16 22 N -0.91 -55.14 13.97 21.65 0.30 -54.84 16 23 Si 0.91 45.03 27.74 68.60 1.90 46.93 16 24 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 27 C 0.11 2.06 6.38 86.86 0.55 2.62 16 28 H 0.09 1.09 7.84 -2.91 -0.02 1.07 16 29 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.13 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.05 0.98 7.75 -2.39 -0.02 0.96 16 32 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.12 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.11 0.38 7.19 -2.39 -0.02 0.36 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.47 7.42 -2.39 -0.02 1.45 16 40 H 0.12 1.16 8.04 -2.39 -0.02 1.14 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 1.01 6.44 -2.38 -0.02 1.00 16 43 H 0.11 0.56 6.05 -2.39 -0.01 0.54 16 44 H 0.11 3.74 7.40 -2.40 -0.02 3.72 16 45 H 0.11 3.73 8.11 -2.40 -0.02 3.71 16 46 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 47 H 0.05 1.22 8.04 -2.38 -0.02 1.20 16 48 H 0.09 1.29 8.04 -2.39 -0.02 1.27 16 Total: -1.00 -82.95 404.27 4.18 -78.77 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.89 Total: 8.63 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 7.29 Total: 0.80 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -4.76 Total: -82.98 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.10 Total: -41.84 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.31 kcal Total: -82.95 4.18 -78.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581782984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.530 kcal (2) G-P(sol) polarization free energy of solvation -82.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds