Wall clock time and date at job start Tue Mar 31 2020 22:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00311 * 2 1 4 4 C 1.52996 * 109.47321 * 270.00397 * 3 2 1 5 5 N 1.46504 * 109.46838 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99976 * 269.99457 * 5 4 3 7 7 C 1.34781 * 119.99984 * 90.00098 * 5 4 3 8 8 O 1.21277 * 120.00073 * 359.97438 * 7 5 4 9 9 C 1.50704 * 119.99479 * 179.97438 * 7 5 4 10 10 H 1.08991 * 109.64098 * 59.57939 * 9 7 5 11 11 C 1.53020 * 109.81515 * 299.04663 * 9 7 5 12 12 C 1.50076 * 110.14324 * 190.77919 * 11 9 7 13 13 C 1.29444 * 124.07409 * 17.13456 * 12 11 9 14 14 C 1.50065 * 124.07627 * 359.53081 * 13 12 11 15 15 C 1.53020 * 110.14790 * 17.12844 * 14 13 12 16 16 C 1.34786 * 119.99661 * 180.02562 * 2 1 3 17 17 O 1.21279 * 119.99400 * 180.02562 * 16 2 1 18 18 C 1.50699 * 119.99869 * 359.97438 * 16 2 1 19 19 S 1.81003 * 109.46750 * 180.02562 * 18 16 2 20 20 C 1.76200 * 99.99757 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00059 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99669 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00429 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99703 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46966 * 60.00462 * 24 22 20 26 26 H 1.48501 * 109.47235 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47410 * 300.00372 * 24 22 20 28 28 H 1.09003 * 109.46943 * 89.99420 * 1 2 3 29 29 H 1.09004 * 109.47606 * 209.99536 * 1 2 3 30 30 H 1.09006 * 109.47174 * 329.99978 * 1 2 3 31 31 H 1.09006 * 109.47086 * 150.00049 * 3 2 1 32 32 H 1.09000 * 109.46797 * 30.00875 * 3 2 1 33 33 H 1.08996 * 109.47354 * 59.99912 * 4 3 2 34 34 H 1.09005 * 109.46939 * 299.99713 * 4 3 2 35 35 H 1.08998 * 109.47018 * 270.00770 * 6 5 4 36 36 H 1.09000 * 109.46416 * 30.00558 * 6 5 4 37 37 H 1.09000 * 109.46811 * 150.00219 * 6 5 4 38 38 H 1.08999 * 109.35480 * 70.57947 * 11 9 7 39 39 H 1.08995 * 109.36342 * 310.98488 * 11 9 7 40 40 H 1.08002 * 117.96076 * 197.40876 * 12 11 9 41 41 H 1.07996 * 117.95688 * 179.50805 * 13 12 11 42 42 H 1.08999 * 109.35990 * 137.33904 * 14 13 12 43 43 H 1.09003 * 109.35519 * 257.06249 * 14 13 12 44 44 H 1.09005 * 109.64107 * 70.25597 * 15 14 13 45 45 H 1.08998 * 109.64233 * 190.66554 * 15 14 13 46 46 H 1.09000 * 109.46749 * 299.99939 * 18 16 2 47 47 H 1.08994 * 109.47230 * 59.99995 * 18 16 2 48 48 H 0.96998 * 120.00298 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1856 2.9788 -1.4423 6 6 2.4537 4.2479 -1.4421 7 6 4.5334 2.9782 -1.4425 8 8 5.1393 1.9276 -1.4424 9 6 5.2874 4.2830 -1.4430 10 1 5.0208 4.8605 -0.5579 11 6 4.9416 5.0815 -2.7017 12 6 5.8730 6.2495 -2.8450 13 6 7.0017 6.3578 -2.2205 14 6 7.5319 5.3355 -1.2584 15 6 6.7962 4.0065 -1.4432 16 6 2.1388 -1.1673 -0.0005 17 8 3.3516 -1.1673 -0.0001 18 6 1.3852 -2.4724 -0.0005 19 16 2.5614 -3.8481 -0.0005 20 6 1.4412 -5.2082 0.0003 21 1 0.3760 -5.0305 0.0001 22 6 1.9280 -6.5081 -0.0001 23 7 3.2263 -6.7248 -0.0004 24 14 0.7404 -7.9501 0.0015 25 1 -0.1159 -7.8873 -1.2102 26 1 1.5064 -9.2222 0.0015 27 1 -0.1134 -7.8869 1.2148 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 3.1500 1.1383 0.5139 32 1 1.6085 2.0283 0.5140 33 1 1.5001 1.8408 -1.9562 34 1 3.0416 0.9507 -1.9563 35 1 2.2720 4.5627 -2.4697 36 1 1.5013 4.1178 -0.9281 37 1 3.0432 5.0072 -0.9282 38 1 3.9162 5.4440 -2.6292 39 1 5.0338 4.4366 -3.5755 40 1 5.5815 7.0515 -3.5070 41 1 7.5991 7.2387 -2.4037 42 1 8.5965 5.1873 -1.4389 43 1 7.3842 5.6890 -0.2379 44 1 7.0862 3.5561 -2.3925 45 1 7.0483 3.3314 -0.6254 46 1 0.7589 -2.5302 0.8897 47 1 0.7582 -2.5299 -0.8902 48 1 3.5664 -7.6332 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582935073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:04 Heat of formation + Delta-G solvation = -52.964032 kcal Electronic energy + Delta-G solvation = -27137.232721 eV Core-core repulsion = 23318.893546 eV Total energy + Delta-G solvation = -3818.339175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.66251 -39.38234 -37.95395 -36.14920 -35.08398 -32.39394 -32.10989 -31.18733 -30.44650 -28.47541 -27.07503 -26.40927 -25.46402 -24.33052 -23.49154 -22.27974 -19.42410 -19.16786 -18.30785 -17.66402 -17.29791 -16.77487 -16.51220 -16.04178 -15.80327 -15.31837 -14.88549 -14.77319 -14.49349 -14.04890 -13.88609 -13.70094 -13.52057 -13.42618 -13.22805 -13.12719 -12.89763 -12.67038 -12.63215 -12.51742 -12.37273 -12.34004 -12.20096 -11.80169 -11.26524 -11.08821 -11.01603 -11.01015 -10.96102 -10.73304 -10.66216 -9.79221 -9.75887 -9.35622 -9.30903 -9.11998 -9.02543 -8.38084 -8.17417 -6.45771 -6.17543 -3.88158 1.91997 2.50842 2.62283 3.08994 3.14182 3.25551 3.29413 3.32539 3.67589 4.13073 4.23692 4.30928 4.48638 4.63937 4.74119 4.81864 4.86914 4.91379 4.96083 5.05911 5.08150 5.11754 5.16381 5.16982 5.19209 5.24156 5.29828 5.34348 5.44711 5.52757 5.56906 5.60060 5.61550 5.68480 5.86108 5.91740 5.93737 5.97705 6.04487 6.16327 6.25391 6.28777 6.56808 6.68807 7.17063 7.55561 7.62488 8.08145 8.38381 8.62738 9.27050 10.89762 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.002059 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.253992 B =13593.795585 C =14524.537567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.107 3.893 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.076 3.924 7 C 0.511 3.489 8 O -0.514 6.514 9 C -0.104 4.104 10 H 0.097 0.903 11 C -0.089 4.089 12 C -0.157 4.157 13 C -0.153 4.153 14 C -0.093 4.093 15 C -0.102 4.102 16 C 0.528 3.472 17 O -0.502 6.502 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 30.671 -3.417 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C -0.017 4.017 4 C -0.024 4.024 5 N -0.353 5.353 6 C -0.067 4.067 7 C 0.298 3.702 8 O -0.387 6.387 9 C -0.125 4.125 10 H 0.115 0.885 11 C -0.126 4.126 12 C -0.175 4.175 13 C -0.171 4.171 14 C -0.130 4.130 15 C -0.140 4.140 16 C 0.316 3.684 17 O -0.375 6.375 18 C -0.300 4.300 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.550 29.947 -3.416 30.147 hybrid contribution -2.463 -0.696 -0.069 2.561 sum -3.013 29.252 -3.485 29.612 Atomic orbital electron populations 1.21777 0.79633 1.03124 1.01674 1.47811 1.06729 1.05474 1.76275 1.21670 0.98422 0.84896 0.96751 1.21872 0.96687 0.85865 0.97931 1.47801 1.05908 1.06858 1.74740 1.21957 0.97374 0.85576 1.01798 1.20728 0.81881 0.91411 0.76164 1.90829 1.67328 1.33220 1.47362 1.21364 0.96853 0.94082 1.00225 0.88468 1.20622 0.99454 0.95431 0.97072 1.21975 0.96133 0.98593 1.00795 1.22121 0.96909 0.99542 0.98496 1.20512 1.00134 0.93767 0.98613 1.21449 0.91804 0.96813 1.03941 1.20412 0.88078 0.84540 0.75394 1.90760 1.13547 1.86559 1.46596 1.23553 1.04519 0.97253 1.04629 1.85479 1.07951 0.93270 1.96684 1.22820 0.94268 0.92266 1.59045 0.91021 1.24995 0.95660 0.98361 0.94599 1.70010 1.11742 1.21732 1.46729 0.86231 0.80191 0.80346 0.78750 1.19959 1.20823 1.19968 0.92831 0.90544 0.91524 0.89548 0.91092 0.90621 0.89071 0.92298 0.91059 0.90742 0.89850 0.90389 0.87661 0.87903 0.90557 0.90725 0.91015 0.90374 0.89306 0.89313 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.28 59.84 0.62 1.43 16 2 N -0.63 -9.07 2.87 -181.57 -0.52 -9.59 16 3 C 0.11 1.38 5.77 -4.05 -0.02 1.35 16 4 C 0.10 1.21 5.73 -4.04 -0.02 1.18 16 5 N -0.62 -6.22 2.87 -181.57 -0.52 -6.74 16 6 C 0.08 0.40 8.82 59.85 0.53 0.93 16 7 C 0.51 6.37 7.06 -10.98 -0.08 6.29 16 8 O -0.51 -9.24 15.48 5.56 0.09 -9.16 16 9 C -0.10 -0.91 1.74 -91.56 -0.16 -1.07 16 10 H 0.10 0.70 7.37 -51.93 -0.38 0.32 16 11 C -0.09 -0.61 4.97 -28.17 -0.14 -0.75 16 12 C -0.16 -1.01 9.80 -35.90 -0.35 -1.36 16 13 C -0.15 -1.02 9.80 -35.90 -0.35 -1.37 16 14 C -0.09 -0.67 6.11 -28.18 -0.17 -0.84 16 15 C -0.10 -0.99 4.69 -26.52 -0.12 -1.11 16 16 C 0.53 10.55 7.69 -10.98 -0.08 10.47 16 17 O -0.50 -12.34 15.44 5.56 0.09 -12.25 16 18 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.54 -15.53 9.50 30.94 0.29 -15.23 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.67 13.22 55.49 0.73 -25.93 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 30 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 31 H 0.09 1.42 7.42 -51.93 -0.39 1.04 16 32 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 33 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.09 1.50 7.42 -51.93 -0.39 1.11 16 35 H 0.06 0.25 7.22 -51.93 -0.37 -0.13 16 36 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 37 H 0.07 0.30 5.92 -51.93 -0.31 -0.01 16 38 H 0.08 0.41 5.03 -51.93 -0.26 0.15 16 39 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 46 H 0.09 1.71 7.40 -51.92 -0.38 1.32 16 47 H 0.09 1.72 8.11 -51.92 -0.42 1.29 16 48 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -38.27 398.56 -9.17 -47.45 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.81 Total: -1.53 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 0.00 Total: -1.01 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.31 Total: -42.26 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.17 Total: -21.41 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.27 -9.17 -47.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582935073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -38.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds