Wall clock time and date at job start Tue Mar 31 2020 23:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00426 * 2 1 4 4 C 1.47196 * 109.47483 * 179.97438 * 3 2 1 5 5 C 3.40063 * 161.19140 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18705 * 0.02562 * 2 1 3 7 7 N 1.46905 * 109.47301 * 294.94472 * 6 5 4 8 8 C 1.46843 * 111.00200 * 293.95935 * 7 6 5 9 9 C 1.53035 * 109.52398 * 185.83525 * 8 7 6 10 10 C 1.53113 * 109.28178 * 300.82214 * 9 8 7 11 11 C 1.53121 * 109.16315 * 57.65019 * 10 9 8 12 12 H 1.08996 * 109.49819 * 62.32712 * 11 10 9 13 13 C 1.52999 * 109.50523 * 182.40658 * 11 10 9 14 14 N 1.46497 * 109.46992 * 295.00124 * 13 11 10 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47282 * 119.99523 * 23 21 19 26 26 H 1.48500 * 109.47237 * 240.00020 * 23 21 19 27 27 C 1.46852 * 110.99696 * 58.16779 * 7 6 5 28 28 H 1.08999 * 109.47400 * 300.00834 * 1 2 3 29 29 H 1.09005 * 109.46850 * 59.99976 * 1 2 3 30 30 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47084 * 59.98804 * 3 2 1 32 32 H 1.09002 * 109.46526 * 299.99668 * 3 2 1 33 33 H 1.09003 * 109.46664 * 174.94939 * 6 5 4 34 34 H 1.08991 * 109.47490 * 54.95111 * 6 5 4 35 35 H 1.08998 * 109.46545 * 65.81705 * 8 7 6 36 36 H 1.09005 * 109.46176 * 305.85298 * 8 7 6 37 37 H 1.09000 * 109.50514 * 180.87844 * 9 8 7 38 38 H 1.09004 * 109.53233 * 60.78179 * 9 8 7 39 39 H 1.09002 * 109.52183 * 297.74800 * 10 9 8 40 40 H 1.08997 * 109.52661 * 177.55902 * 10 9 8 41 41 H 1.08995 * 109.46838 * 175.00011 * 13 11 10 42 42 H 1.09001 * 109.46617 * 55.00347 * 13 11 10 43 43 H 0.97000 * 120.00580 * 0.02562 * 14 13 11 44 44 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 45 45 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 46 46 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.46345 * 54.13999 * 27 7 6 48 48 H 1.09000 * 109.45954 * 294.17698 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6480 1.0964 0.0005 6 6 6.1154 0.9801 0.0004 7 7 6.5575 0.3592 1.2562 8 6 6.2762 1.2325 2.4028 9 6 6.8780 0.6220 3.6705 10 6 6.2717 -0.7650 3.9007 11 6 6.5367 -1.6397 2.6722 12 1 7.6113 -1.7656 2.5402 13 6 5.8823 -3.0086 2.8689 14 7 6.5287 -3.7029 3.9852 15 6 6.1140 -4.9342 4.3438 16 8 5.2061 -5.4675 3.7419 17 6 6.7830 -5.6510 5.4882 18 16 6.0127 -7.2728 5.7171 19 6 6.9610 -7.8730 7.0754 20 1 7.7444 -7.2620 7.4990 21 6 6.7007 -9.1307 7.6017 22 7 5.7450 -9.8748 7.0865 23 14 7.7056 -9.7668 9.0422 24 1 8.7105 -8.7459 9.4338 25 1 6.8054 -10.0419 10.1907 26 1 8.4004 -11.0183 8.6468 27 6 5.9448 -0.9636 1.4334 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8898 32 1 1.6887 1.8462 -0.8901 33 1 6.5584 1.9720 -0.0901 34 1 6.4310 0.3632 -0.8408 35 1 5.1980 1.3348 2.5255 36 1 6.7165 2.2143 2.2281 37 1 6.6557 1.2626 4.5239 38 1 7.9582 0.5323 3.5544 39 1 5.1969 -0.6715 4.0562 40 1 6.7292 -1.2215 4.7784 41 1 5.9948 -3.5991 1.9597 42 1 4.8227 -2.8766 3.0876 43 1 7.2545 -3.2763 4.4669 44 1 7.8425 -5.7800 5.2666 45 1 6.6713 -5.0639 6.3997 46 1 5.5632 -10.7539 7.4540 47 1 6.1442 -1.5769 0.5547 48 1 4.8681 -0.8510 1.5607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661702792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:43 Heat of formation + Delta-G solvation = -38.439864 kcal Electronic energy + Delta-G solvation = -26166.006718 eV Core-core repulsion = 22348.297359 eV Total energy + Delta-G solvation = -3817.709360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94542 -38.85869 -38.38133 -35.86999 -34.08396 -32.65977 -32.40340 -31.64210 -29.31219 -28.93689 -27.04380 -25.81819 -25.68610 -25.30879 -23.28802 -21.89009 -20.37854 -19.91472 -17.88742 -17.78787 -16.92587 -16.50216 -16.36990 -16.17887 -15.87587 -15.47863 -15.30564 -15.21274 -14.78384 -14.61607 -14.30239 -13.94961 -13.73309 -13.44721 -13.31530 -13.19928 -13.03216 -12.78824 -12.58867 -12.49748 -12.21379 -11.98010 -11.71922 -11.39526 -11.05589 -11.03627 -10.99161 -10.88653 -10.75315 -10.64467 -10.54198 -10.37425 -9.96087 -9.77762 -9.34308 -9.05414 -8.92458 -8.79395 -8.19506 -6.46812 -6.19351 -3.89435 1.99220 2.19421 3.06896 3.16977 3.23240 3.29604 3.33849 3.39637 3.59362 3.84089 3.99581 4.22742 4.42848 4.48708 4.61255 4.66614 4.79126 4.83021 4.89304 4.94090 4.97424 5.05534 5.14575 5.15743 5.20178 5.21820 5.26187 5.28681 5.29628 5.39241 5.47145 5.50141 5.59043 5.66538 5.73907 5.82835 5.86979 5.94438 6.01320 6.16759 6.18267 6.57602 6.60372 6.63762 6.70938 7.14723 7.62292 7.78155 8.37911 8.68568 9.26014 10.88133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.001892 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.843116 B =14793.904797 C =16152.577379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.176 3.824 4 C -0.182 4.182 5 C -0.184 4.184 6 C 0.162 3.838 7 N -0.523 5.523 8 C 0.052 3.948 9 C -0.116 4.116 10 C -0.119 4.119 11 C -0.094 4.094 12 H 0.087 0.913 13 C 0.127 3.873 14 N -0.736 5.736 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.061 3.939 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.267 0.733 47 H 0.080 0.920 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 29.034 -13.761 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.100 3.900 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.035 3.965 7 N -0.245 5.245 8 C -0.076 4.076 9 C -0.154 4.154 10 C -0.157 4.157 11 C -0.113 4.113 12 H 0.105 0.895 13 C 0.003 3.997 14 N -0.391 5.391 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.068 4.068 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.231 0.769 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.863 27.735 -14.780 31.557 hybrid contribution 0.811 0.784 1.860 2.176 sum -2.052 28.519 -12.919 31.376 Atomic orbital electron populations 1.22819 0.79954 1.03583 1.00185 1.88004 1.20349 1.26555 1.95488 1.19073 0.83820 0.85742 1.01329 1.21856 0.92978 1.03181 1.00335 1.23713 0.95036 0.97885 1.01985 1.19514 0.81924 1.01295 0.93749 1.62349 1.57235 1.03191 1.01702 1.22158 0.98869 0.96049 0.90530 1.21583 1.01147 0.96332 0.96317 1.21674 1.01249 0.95110 0.97617 1.21395 1.01461 0.93654 0.94788 0.89465 1.21220 0.97047 0.91306 0.90156 1.45973 1.39385 1.18131 1.35642 1.20296 0.83078 0.80510 0.84450 1.90704 1.29085 1.65581 1.53878 1.23527 1.03911 1.04513 0.98405 1.85406 1.47246 1.07219 1.43589 1.22914 1.21966 1.04777 1.18582 0.90883 1.25001 0.95491 0.95708 0.97483 1.70034 1.29257 1.10620 1.40391 0.86113 0.79576 0.78733 0.81043 1.19622 1.20592 1.20581 1.22058 0.97027 0.89400 0.98265 0.93657 0.93729 0.88930 0.90950 0.90823 0.88129 0.87830 0.94538 0.90673 0.91349 0.90851 0.91915 0.91280 0.91500 0.91719 0.76868 0.89235 0.89299 0.92265 0.90147 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.85 10.66 -35.23 -0.38 -4.23 16 3 C 0.18 1.37 6.41 34.37 0.22 1.59 16 4 C -0.18 -1.79 13.73 -37.12 -0.51 -2.30 16 5 C -0.18 -1.70 11.00 -37.12 -0.41 -2.11 16 6 C 0.16 1.14 5.88 -6.61 -0.04 1.10 16 7 N -0.52 -4.22 4.86 -238.18 -1.16 -5.38 16 8 C 0.05 0.39 5.13 -3.84 -0.02 0.37 16 9 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 10 C -0.12 -1.03 5.13 -26.61 -0.14 -1.17 16 11 C -0.09 -0.87 2.39 -90.54 -0.22 -1.09 16 12 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 13 C 0.13 1.58 5.07 -4.04 -0.02 1.56 16 14 N -0.74 -10.18 5.31 -60.30 -0.32 -10.50 16 15 C 0.53 10.21 7.85 -10.98 -0.09 10.13 16 16 O -0.52 -12.19 15.86 5.55 0.09 -12.10 16 17 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 20 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 C 0.06 0.57 4.29 -3.83 -0.02 0.55 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.32 7.48 -51.93 -0.39 -0.06 16 36 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.58 7.25 -51.93 -0.38 0.20 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.40 4.32 7.67 -40.82 -0.31 4.01 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 48 H 0.04 0.50 7.27 -51.93 -0.38 0.12 16 LS Contribution 410.50 15.07 6.19 6.19 Total: -1.00 -36.34 410.50 -10.12 -46.46 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.18 Total: -0.31 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 0.14 Total: -7.11 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.74 Total: -41.59 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.29 Total: -16.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.34 -10.12 -46.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661702792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds