Wall clock time and date at job start Tue Mar 31 2020 23:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00426 * 2 1 4 4 C 1.47196 * 109.47483 * 179.97438 * 3 2 1 5 5 C 3.40063 * 161.19140 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18705 * 0.02562 * 2 1 3 7 7 N 1.46905 * 109.47301 * 294.94472 * 6 5 4 8 8 C 1.46843 * 111.00200 * 293.95935 * 7 6 5 9 9 C 1.53035 * 109.52398 * 185.83525 * 8 7 6 10 10 C 1.53113 * 109.28178 * 300.82214 * 9 8 7 11 11 C 1.53121 * 109.16315 * 57.65019 * 10 9 8 12 12 H 1.08996 * 109.49819 * 62.32712 * 11 10 9 13 13 C 1.52999 * 109.50523 * 182.40658 * 11 10 9 14 14 N 1.46497 * 109.46992 * 295.00124 * 13 11 10 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47282 * 119.99523 * 23 21 19 26 26 H 1.48500 * 109.47237 * 240.00020 * 23 21 19 27 27 C 1.46852 * 110.99696 * 58.16779 * 7 6 5 28 28 H 1.08999 * 109.47400 * 300.00834 * 1 2 3 29 29 H 1.09005 * 109.46850 * 59.99976 * 1 2 3 30 30 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47084 * 59.98804 * 3 2 1 32 32 H 1.09002 * 109.46526 * 299.99668 * 3 2 1 33 33 H 1.09003 * 109.46664 * 174.94939 * 6 5 4 34 34 H 1.08991 * 109.47490 * 54.95111 * 6 5 4 35 35 H 1.08998 * 109.46545 * 65.81705 * 8 7 6 36 36 H 1.09005 * 109.46176 * 305.85298 * 8 7 6 37 37 H 1.09000 * 109.50514 * 180.87844 * 9 8 7 38 38 H 1.09004 * 109.53233 * 60.78179 * 9 8 7 39 39 H 1.09002 * 109.52183 * 297.74800 * 10 9 8 40 40 H 1.08997 * 109.52661 * 177.55902 * 10 9 8 41 41 H 1.08995 * 109.46838 * 175.00011 * 13 11 10 42 42 H 1.09001 * 109.46617 * 55.00347 * 13 11 10 43 43 H 0.97000 * 120.00580 * 0.02562 * 14 13 11 44 44 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 45 45 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 46 46 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.46345 * 54.13999 * 27 7 6 48 48 H 1.09000 * 109.45954 * 294.17698 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6480 1.0964 0.0005 6 6 6.1154 0.9801 0.0004 7 7 6.5575 0.3592 1.2562 8 6 6.2762 1.2325 2.4028 9 6 6.8780 0.6220 3.6705 10 6 6.2717 -0.7650 3.9007 11 6 6.5367 -1.6397 2.6722 12 1 7.6113 -1.7656 2.5402 13 6 5.8823 -3.0086 2.8689 14 7 6.5287 -3.7029 3.9852 15 6 6.1140 -4.9342 4.3438 16 8 5.2061 -5.4675 3.7419 17 6 6.7830 -5.6510 5.4882 18 16 6.0127 -7.2728 5.7171 19 6 6.9610 -7.8730 7.0754 20 1 7.7444 -7.2620 7.4990 21 6 6.7007 -9.1307 7.6017 22 7 5.7450 -9.8748 7.0865 23 14 7.7056 -9.7668 9.0422 24 1 8.7105 -8.7459 9.4338 25 1 6.8054 -10.0419 10.1907 26 1 8.4004 -11.0183 8.6468 27 6 5.9448 -0.9636 1.4334 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8898 32 1 1.6887 1.8462 -0.8901 33 1 6.5584 1.9720 -0.0901 34 1 6.4310 0.3632 -0.8408 35 1 5.1980 1.3348 2.5255 36 1 6.7165 2.2143 2.2281 37 1 6.6557 1.2626 4.5239 38 1 7.9582 0.5323 3.5544 39 1 5.1969 -0.6715 4.0562 40 1 6.7292 -1.2215 4.7784 41 1 5.9948 -3.5991 1.9597 42 1 4.8227 -2.8766 3.0876 43 1 7.2545 -3.2763 4.4669 44 1 7.8425 -5.7800 5.2666 45 1 6.6713 -5.0639 6.3997 46 1 5.5632 -10.7539 7.4540 47 1 6.1442 -1.5769 0.5547 48 1 4.8681 -0.8510 1.5607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661702792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:43 Heat of formation + Delta-G solvation = -64.583831 kcal Electronic energy + Delta-G solvation = -26167.140406 eV Core-core repulsion = 22348.297359 eV Total energy + Delta-G solvation = -3818.843047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93708 -40.07681 -39.00140 -36.84547 -35.03427 -34.58012 -33.43047 -32.58217 -30.70925 -29.61179 -27.72869 -27.60825 -26.63586 -26.27605 -23.96147 -22.71113 -21.77032 -20.74662 -19.82156 -18.49524 -17.86143 -17.51059 -17.33658 -16.98688 -16.87910 -16.80489 -16.58232 -16.21538 -16.03539 -15.72561 -15.46460 -15.13031 -14.75957 -14.53580 -14.35922 -14.10370 -13.95019 -13.78396 -13.60904 -13.47962 -13.15586 -13.06827 -12.98973 -12.90225 -12.58255 -12.50900 -12.12513 -11.76015 -11.70953 -11.57763 -11.38315 -11.21980 -11.15577 -11.03171 -10.94802 -10.55695 -10.26668 -10.13082 -9.59807 -8.66723 -8.34406 -6.12599 1.27136 1.32837 1.41953 1.47095 1.51615 1.58973 1.61349 2.24801 2.28885 2.80521 2.99716 3.01445 3.32733 3.41378 3.67349 3.74173 3.87414 3.98827 4.14993 4.17925 4.27293 4.29906 4.31988 4.37463 4.42571 4.46465 4.51257 4.51887 4.54190 4.57932 4.59997 4.68465 4.74531 4.80732 4.81916 4.87936 4.94495 5.07422 5.15862 5.23431 5.38079 5.42635 5.48732 5.93188 5.99318 6.07275 6.20568 6.47679 6.50713 7.06847 7.24558 8.75136 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.001892 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.843116 B =14793.904797 C =16152.577379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.171 3.829 4 C -0.212 4.212 5 C -0.191 4.191 6 C 0.159 3.841 7 N -0.519 5.519 8 C 0.051 3.949 9 C -0.111 4.111 10 C -0.119 4.119 11 C -0.079 4.079 12 H 0.101 0.899 13 C 0.129 3.871 14 N -0.708 5.708 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.128 4.128 18 S -0.155 6.155 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.065 3.935 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.019 0.981 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.416 0.584 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.080 0.920 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 31.263 -12.977 33.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.096 3.904 4 C -0.214 4.214 5 C -0.193 4.193 6 C 0.032 3.968 7 N -0.240 5.240 8 C -0.077 4.077 9 C -0.148 4.148 10 C -0.157 4.157 11 C -0.099 4.099 12 H 0.119 0.881 13 C 0.005 3.995 14 N -0.362 5.362 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.064 4.064 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.038 0.962 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.254 0.746 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.542 30.030 -13.999 33.137 hybrid contribution 0.072 0.220 1.529 1.547 sum -0.469 30.250 -12.470 32.723 Atomic orbital electron populations 1.22978 0.78372 1.04007 1.01650 1.87941 1.22288 1.28103 1.95783 1.19306 0.82914 0.85232 1.02959 1.22575 0.94145 1.03922 1.00772 1.24295 0.95867 0.97352 1.01764 1.19768 0.80761 1.02716 0.93510 1.62390 1.56631 1.02631 1.02368 1.22218 0.98041 0.96855 0.90552 1.21562 1.01369 0.95323 0.96563 1.21683 1.00548 0.96129 0.97331 1.21278 1.01646 0.91626 0.95303 0.88090 1.21285 0.96448 0.92807 0.88967 1.45688 1.38985 1.16203 1.35355 1.20113 0.82484 0.81723 0.83881 1.90695 1.31378 1.67163 1.55462 1.23364 1.04229 1.00276 1.00058 1.85616 1.49668 1.13042 1.44426 1.23240 1.22070 1.05365 1.18526 0.89796 1.26163 0.96643 0.95879 1.00677 1.70199 1.31202 1.11170 1.42288 0.84879 0.77923 0.78271 0.76699 1.17920 1.19958 1.19943 1.21951 0.95722 0.90486 0.98204 0.92518 0.91906 0.89112 0.89572 0.88741 0.85732 0.86826 0.96219 0.88845 0.90221 0.89971 0.93449 0.90592 0.92356 0.93399 0.74598 0.87018 0.87122 0.92015 0.90148 0.96033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.63 10.66 -148.98 -1.59 -10.22 16 3 C 0.17 2.64 6.41 70.18 0.45 3.09 16 4 C -0.21 -4.20 13.73 31.12 0.43 -3.77 16 5 C -0.19 -3.44 11.00 31.12 0.34 -3.09 16 6 C 0.16 1.96 5.88 84.50 0.50 2.46 16 7 N -0.52 -7.43 4.86 -907.47 -4.41 -11.84 16 8 C 0.05 0.67 5.13 86.33 0.44 1.11 16 9 C -0.11 -1.33 6.09 30.64 0.19 -1.14 16 10 C -0.12 -1.85 5.13 30.67 0.16 -1.70 16 11 C -0.08 -1.36 2.39 -10.74 -0.03 -1.39 16 12 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 13 C 0.13 3.17 5.07 86.38 0.44 3.60 16 14 N -0.71 -18.56 5.31 -463.07 -2.46 -21.01 16 15 C 0.53 20.29 7.85 87.66 0.69 20.97 16 16 O -0.57 -27.48 15.86 -3.04 -0.05 -27.53 16 17 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 18 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 19 C -0.54 -31.35 9.50 67.95 0.65 -30.70 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.63 5.49 84.86 0.47 1.09 16 22 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 23 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.06 1.17 4.29 86.32 0.37 1.54 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.12 0.95 8.06 -2.39 -0.02 0.93 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.02 0.33 7.48 -2.39 -0.02 0.31 16 36 H 0.09 0.92 8.06 -2.38 -0.02 0.90 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.08 7.25 -2.39 -0.02 1.06 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.42 7.86 7.67 -92.71 -0.71 7.15 16 44 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 45 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 46 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 47 H 0.08 1.43 8.12 -2.39 -0.02 1.42 16 48 H 0.02 0.49 7.27 -2.39 -0.02 0.47 16 Total: -1.00 -81.71 410.50 -0.34 -82.05 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.23 Total: 19.92 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 6.77 Total: -11.07 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -6.58 Total: -89.20 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.64 Total: -37.75 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -81.71 -0.34 -82.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661702792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.469 kcal (2) G-P(sol) polarization free energy of solvation -81.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds