Wall clock time and date at job start Tue Mar 31 2020 23:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 113.99896 * 2 1 4 4 C 1.47198 * 109.47156 * 179.97438 * 3 2 1 5 5 C 3.40060 * 161.18711 * 0.02562 * 2 1 3 6 6 C 4.78779 * 168.18424 * 0.02562 * 2 1 3 7 7 N 1.46899 * 109.46930 * 194.87264 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05089 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 11 11 C 1.53120 * 109.16202 * 302.34077 * 10 9 8 12 12 H 1.08996 * 109.50004 * 297.72216 * 11 10 9 13 13 C 1.53001 * 109.50234 * 177.59979 * 11 10 9 14 14 N 1.46493 * 109.47311 * 65.00186 * 13 11 10 15 15 C 1.34771 * 120.00523 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99606 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00812 * 180.02562 * 15 14 13 18 18 S 1.80993 * 109.47656 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00335 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99667 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00266 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99684 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47204 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47141 * 120.00037 * 23 21 19 26 26 H 1.48497 * 109.47414 * 240.00407 * 23 21 19 27 27 C 1.46847 * 110.99299 * 301.84248 * 7 6 5 28 28 H 1.09004 * 109.47345 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47297 * 300.00336 * 1 2 3 30 30 H 1.08999 * 109.47540 * 60.00337 * 1 2 3 31 31 H 1.08996 * 109.47756 * 59.99546 * 3 2 1 32 32 H 1.09006 * 109.47566 * 299.99601 * 3 2 1 33 33 H 1.09004 * 109.47171 * 74.87674 * 6 5 4 34 34 H 1.08996 * 109.47453 * 314.87961 * 6 5 4 35 35 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 36 36 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 37 37 H 1.09000 * 109.49745 * 179.12223 * 9 8 7 38 38 H 1.08996 * 109.50070 * 299.23917 * 9 8 7 39 39 H 1.08993 * 109.52284 * 62.25342 * 10 9 8 40 40 H 1.09003 * 109.51690 * 182.37761 * 10 9 8 41 41 H 1.09001 * 109.46661 * 185.00458 * 13 11 10 42 42 H 1.09003 * 109.46994 * 305.00259 * 13 11 10 43 43 H 0.97009 * 120.00059 * 0.02562 * 14 13 11 44 44 H 1.09004 * 109.47062 * 300.00432 * 17 15 14 45 45 H 1.09006 * 109.47065 * 59.99369 * 17 15 14 46 46 H 0.96998 * 119.99542 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.46836 * 65.83946 * 27 7 6 48 48 H 1.08994 * 109.46332 * 305.85962 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.4775 1.1892 0.0006 5 6 4.6479 1.0966 0.0005 6 6 6.1153 0.9804 0.0004 7 7 6.7091 2.2761 0.3559 8 6 6.3876 2.6398 1.7418 9 6 7.1392 3.9175 2.1225 10 6 6.7318 5.0461 1.1713 11 6 7.0324 4.6224 -0.2691 12 1 8.1041 4.4612 -0.3848 13 6 6.5732 5.7202 -1.2308 14 7 7.3703 6.9289 -1.0086 15 6 7.1413 8.0326 -1.7474 16 8 6.2748 8.0251 -2.5961 17 6 7.9616 9.2759 -1.5192 18 16 7.4184 10.5746 -2.6567 19 6 8.5132 11.8722 -2.1852 20 1 9.2366 11.7097 -1.3999 21 6 8.4467 13.1028 -2.8237 22 7 7.5653 13.3006 -3.7812 23 14 9.6068 14.4786 -2.3233 24 1 10.4942 14.0050 -1.2308 25 1 10.4314 14.8801 -3.4913 26 1 8.8176 15.6442 -1.8503 27 6 6.2839 3.3243 -0.5805 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 6.4563 0.6844 -0.9917 34 1 6.4203 0.2288 0.7286 35 1 6.6860 1.8306 2.4083 36 1 5.3147 2.8086 1.8333 37 1 6.8883 4.1959 3.1461 38 1 8.2126 3.7452 2.0443 39 1 5.6655 5.2449 1.2776 40 1 7.2962 5.9469 1.4122 41 1 6.7054 5.3815 -2.2584 42 1 5.5206 5.9414 -1.0538 43 1 8.0636 6.9348 -0.3300 44 1 7.8296 9.6148 -0.4916 45 1 9.0142 9.0543 -1.6961 46 1 7.5191 14.1605 -4.2276 47 1 5.2114 3.4900 -0.4779 48 1 6.5071 3.0122 -1.6007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661702793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:47 Heat of formation + Delta-G solvation = -38.880284 kcal Electronic energy + Delta-G solvation = -25908.538737 eV Core-core repulsion = 22090.810279 eV Total energy + Delta-G solvation = -3817.728458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.98841 -38.89904 -38.44184 -35.90557 -34.11171 -32.68279 -32.42290 -31.68418 -29.34845 -28.96956 -27.10195 -25.85852 -25.70959 -25.33408 -23.32399 -21.92451 -20.42258 -19.96108 -17.92020 -17.81019 -16.96777 -16.49342 -16.45887 -16.22140 -15.91378 -15.52307 -15.34443 -15.25459 -14.80085 -14.64098 -14.35358 -13.97521 -13.76636 -13.56237 -13.37025 -13.15158 -13.05236 -12.82483 -12.59676 -12.51815 -12.22375 -12.11130 -11.76095 -11.43528 -11.07978 -11.06345 -11.01212 -10.91209 -10.76643 -10.68471 -10.61701 -10.46932 -9.91452 -9.79768 -9.38593 -9.07261 -8.95912 -8.84095 -8.22101 -6.49135 -6.21317 -3.91602 1.93014 2.25233 3.03472 3.12709 3.21902 3.27787 3.31626 3.36405 3.52490 3.78600 4.02533 4.20951 4.38938 4.44419 4.56791 4.66332 4.73596 4.80430 4.85483 4.89163 4.95545 5.04024 5.11129 5.13979 5.15906 5.18282 5.18505 5.23817 5.28242 5.34896 5.42351 5.44993 5.54714 5.62545 5.70554 5.78335 5.83095 5.91307 5.96454 6.11977 6.15450 6.52557 6.55180 6.60123 6.66626 7.14101 7.60460 7.73677 8.36023 8.64168 9.24201 10.86213 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.001698 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.383385 B =16487.748934 C =17545.746493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.176 3.824 4 C -0.181 4.181 5 C -0.183 4.183 6 C 0.163 3.837 7 N -0.524 5.524 8 C 0.052 3.948 9 C -0.116 4.116 10 C -0.119 4.119 11 C -0.095 4.095 12 H 0.088 0.912 13 C 0.128 3.872 14 N -0.736 5.736 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.061 3.939 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.041 0.959 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -27.739 12.890 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.100 3.900 4 C -0.183 4.183 5 C -0.185 4.185 6 C 0.036 3.964 7 N -0.245 5.245 8 C -0.076 4.076 9 C -0.154 4.154 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.106 0.894 13 C 0.003 3.997 14 N -0.391 5.391 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.067 4.067 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.175 -27.830 11.305 30.884 hybrid contribution 0.846 1.194 1.669 2.220 sum -6.330 -26.636 12.974 30.296 Atomic orbital electron populations 1.22811 0.80004 1.03297 1.00467 1.87948 1.20321 1.26859 1.95556 1.19082 0.83817 0.85449 1.01622 1.21819 0.92946 1.01777 1.01755 1.23686 0.94934 0.98678 1.01232 1.19520 0.80715 0.92653 1.03555 1.62321 1.57124 1.02001 1.03089 1.22166 0.98235 0.98163 0.89042 1.21590 1.01114 0.93864 0.98845 1.21674 1.01742 0.98262 0.93966 1.21405 1.01621 0.93426 0.94920 0.89377 1.21218 0.95573 0.84061 0.98872 1.45973 1.39838 1.12478 1.40848 1.20303 0.83675 0.83802 0.80509 1.90703 1.32620 1.83300 1.32706 1.23526 1.02421 0.98009 1.06420 1.85399 1.49037 1.03663 1.45368 1.22917 1.22153 0.98815 1.24428 0.90872 1.24994 0.95990 0.98035 0.94589 1.70032 1.33541 1.24295 1.22438 0.86113 0.80044 0.80816 0.78496 1.19615 1.20568 1.20581 1.22056 0.97627 0.90598 0.96418 0.89155 0.93640 0.93528 0.90851 0.90640 0.87892 0.88023 0.90582 0.94558 0.91306 0.90816 0.91952 0.91247 0.91507 0.91797 0.76822 0.89275 0.89218 0.92251 0.94051 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.45 10.66 -35.23 -0.38 -3.83 16 3 C 0.18 1.37 6.41 34.37 0.22 1.59 16 4 C -0.18 -1.79 13.73 -37.12 -0.51 -2.30 16 5 C -0.18 -1.69 11.00 -37.12 -0.41 -2.10 16 6 C 0.16 1.14 5.88 -6.61 -0.04 1.10 16 7 N -0.52 -4.04 4.86 -238.18 -1.16 -5.20 16 8 C 0.05 0.38 5.13 -3.83 -0.02 0.36 16 9 C -0.12 -0.81 6.09 -26.65 -0.16 -0.97 16 10 C -0.12 -0.96 5.13 -26.61 -0.14 -1.10 16 11 C -0.09 -0.82 2.39 -90.54 -0.22 -1.03 16 12 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 13 C 0.13 1.49 5.07 -4.05 -0.02 1.47 16 14 N -0.74 -9.78 5.31 -60.30 -0.32 -10.10 16 15 C 0.53 9.97 7.85 -10.99 -0.09 9.88 16 16 O -0.52 -11.93 15.86 5.55 0.09 -11.84 16 17 C -0.15 -3.10 6.15 36.00 0.22 -2.88 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.06 0.52 4.29 -3.83 -0.02 0.50 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.04 0.31 7.48 -51.93 -0.39 -0.08 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.55 7.26 -51.93 -0.38 0.17 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 4.14 7.67 -40.82 -0.31 3.83 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.04 0.40 7.27 -51.93 -0.38 0.02 16 48 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 LS Contribution 410.51 15.07 6.19 6.19 Total: -1.00 -35.90 410.51 -10.12 -46.02 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.18 Total: -1.04 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.14 Total: -7.22 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -0.74 Total: -40.82 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.29 Total: -15.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.90 -10.12 -46.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661702793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.135 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds